# # CDDL HEADER START # # The contents of this file are subject to the terms of the Common Development # and Distribution License Version 1.0 (the "License"). # # You can obtain a copy of the license at # http://www.opensource.org/licenses/CDDL-1.0. See the License for the # specific language governing permissions and limitations under the License. # # When distributing Covered Code, include this CDDL HEADER in each file and # include the License file in a prominent location with the name LICENSE.CDDL. # If applicable, add the following below this CDDL HEADER, with the fields # enclosed by brackets "[]" replaced with your own identifying information: # # Portions Copyright (c) [yyyy] [name of copyright owner]. All rights reserved. # # CDDL HEADER END # # # Copyright (c) 2013--2015, Regents of the University of Minnesota. # All rights reserved. # # Contributors: # Ryan S. Elliott # Andrew Akerson # Ellad B. Tadmor # Valeriu Smirichinski # This directory contains a shifted Morse pair potential Model driver written in C. This driver is based on the publications: V.S. Guthikonda and R.S. Elliott, Continuum Mechanics and Thermodynamics (2009) 21:269--295 and (2011) 23:177--183. phi(r; theta) = A(theta) * ( exp[-2*B(theta)*(r/rHat(theta) - 1)] - 2*exp[-B(theta*(r/rHat(theta) - 1)] ) + shift where: rHat(theta) = r1 + r2 * (exp(r3*(theta - 1.0)) - 1.0) B(theta) = B1 + B2 * (theta^B3 - 1.0) A(theta) = A1 + A2 * (theta^A3 - 1.0) And shift is computed so that phi(rcut) = 0.0 It publishes its parameters, and supports optional computation of `energy', `forces', `particleEnergy', `process_dEdr', and `process_dE2dr2'. To create a KIM Model from this Model Driver, a parameter file is required. This file must have the following format: * Blank lines and lines beginning with the `#' character are ignored. * The parameters given on each line of the file are to be space separated. * Line 0 : N temp - N : integer number of distinct particle species (max 139) - Temp : double temperature parameter (in Kelvin) * Lines 1,4,7..: species_i species_j cutoff A1 A2 A3 - species_i : A valid kim-api particle species string - species_j : A valid kim-api particle species string - cutoff : double distance value (in Angstroms) for cutoffs{ij} - A1 : double energy value (in eV) for A1s{ij} - A2 : double energy value (in eV) for A2s{ij} - A3 : double unitless value for A3s{ij} * Lines 2,5,8..: B1, B2, B3 - B1 : double unitless value for B1s{ij} - B2 : double unitless value for B2s{ij} - B3 : double unitless value for B3s{ij} * Lines 3,6,9..: r1, r2, r3 - r1 : double distance value (in Angstroms) for r1s{ij} - r2 : double distance value (in Angstroms) for r2s{ij} - r3 : double unitless value for r3s{ij} The parameter file must contain ALL parameter sets for each unique (unordered) combination of the interacting species. It is also imperative that the pure-species interactions all be given before the interspecies interactions; this is used to establish the indexing of the species (both used internally and registered in the KIM API). If any repeated interactions are specified, only the last set of provided parameters will be used. The model driver sets the kim-api `cutoff' argument to max_{ij}(cutoff_{ij}).