# Variables that can be adjusted by kim-lammps-preprocessor to switch unit sets for # Simulator Models variable _u_distance equal 1.0 variable _u_energy equal 1.0 variable _u_mass equal 1.0 variable _u_time equal 1.0 variable _u_pressure equal 1.0 variable _u_temperature equal 1.0 # This line may be swapped out by kim-lammps-preprocessor if running against a Simulator # Model whose atom_style is not 'atomic' atom_style atomic # periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.08997417986393*${_u_distance} variable latticeconst_converted equal 4.08997417986393*1 lattice fcc ${latticeconst_converted} lattice fcc 4.08997417986393 Lattice spacing in x,y,z = 4.08997 4.08997 4.08997 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (40.8997 40.8997 40.8997) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms create_atoms CPU = 0.0105231 secs variable mass_converted equal 107.8682*${_u_mass} variable mass_converted equal 107.8682*1 # specify which KIM Model to use pair_style kim EAM_Dynamo_HaleWongZimmerman_2008PairMorse_PdAgH__MO_108983864770_005 pair_coeff * * Ag mass 1 ${mass_converted} mass 1 107.8682 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 68416.6332427255 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 68416.6332427255/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 68416.6332427255/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 68416.6332427255/(1*1*${_u_distance}) variable V0_metal equal 68416.6332427255/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 68416.6332427255*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 68416.6332427255 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -11248.522 -11248.522 -11400.054 -11400.054 293.15 293.15 68416.633 68416.633 2365.7449 2365.7449 1000 -11092.258 -11092.258 -11245.817 -11245.817 297.07015 297.07015 69672.796 69672.796 102.06656 102.06656 Loop time of 22.3564 on 1 procs for 1000 steps with 4000 atoms Performance: 3.865 ns/day, 6.210 hours/ns, 44.730 timesteps/s 37.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 21.821 | 21.821 | 21.821 | 0.0 | 97.61 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15868 | 0.15868 | 0.15868 | 0.0 | 0.71 Output | 4.5061e-05 | 4.5061e-05 | 4.5061e-05 | 0.0 | 0.00 Modify | 0.33624 | 0.33624 | 0.33624 | 0.0 | 1.50 Other | | 0.04014 | | | 0.18 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 536000 ave 536000 max 536000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 536000 Ave neighs/atom = 134 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -11092.258 -11092.258 -11245.817 -11245.817 297.07015 297.07015 69672.796 69672.796 102.06656 102.06656 2000 -11105.741 -11105.741 -11255.149 -11255.149 289.04051 289.04051 69607.415 69607.415 -19.260154 -19.260154 Loop time of 28.2463 on 1 procs for 1000 steps with 4000 atoms Performance: 3.059 ns/day, 7.846 hours/ns, 35.403 timesteps/s 35.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 27.56 | 27.56 | 27.56 | 0.0 | 97.57 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.058323 | 0.058323 | 0.058323 | 0.0 | 0.21 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.58712 | 0.58712 | 0.58712 | 0.0 | 2.08 Other | | 0.04057 | | | 0.14 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5858 ave 5858 max 5858 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535004 ave 535004 max 535004 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535004 Ave neighs/atom = 133.751 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -11105.741 -11105.741 -11255.149 -11255.149 289.04051 289.04051 69607.415 69607.415 -19.260154 -19.260154 3000 -11097.517 -11097.517 -11251.926 -11251.926 298.7145 298.7145 69594.471 69594.471 739.53872 739.53872 Loop time of 27.4612 on 1 procs for 1000 steps with 4000 atoms Performance: 3.146 ns/day, 7.628 hours/ns, 36.415 timesteps/s 36.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 26.754 | 26.754 | 26.754 | 0.0 | 97.43 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20939 | 0.20939 | 0.20939 | 0.0 | 0.76 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.45719 | 0.45719 | 0.45719 | 0.0 | 1.66 Other | | 0.0404 | | | 0.15 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5862 ave 5862 max 5862 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535444 ave 535444 max 535444 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535444 Ave neighs/atom = 133.861 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -11097.517 -11097.517 -11251.926 -11251.926 298.7145 298.7145 69594.471 69594.471 739.53872 739.53872 4000 -11102.266 -11102.266 -11253.087 -11253.087 291.77296 291.77296 69612.177 69612.177 186.70958 186.70958 Loop time of 26.787 on 1 procs for 1000 steps with 4000 atoms Performance: 3.225 ns/day, 7.441 hours/ns, 37.332 timesteps/s 37.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 26.188 | 26.188 | 26.188 | 0.0 | 97.76 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13838 | 0.13838 | 0.13838 | 0.0 | 0.52 Output | 3.6001e-05 | 3.6001e-05 | 3.6001e-05 | 0.0 | 0.00 Modify | 0.44063 | 0.44063 | 0.44063 | 0.0 | 1.64 Other | | 0.02024 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5852 ave 5852 max 5852 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535314 ave 535314 max 535314 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535314 Ave neighs/atom = 133.828 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -11102.266 -11102.266 -11253.087 -11253.087 291.77296 291.77296 69612.177 69612.177 186.70958 186.70958 5000 -11104.011 -11104.011 -11255.866 -11255.866 293.77337 293.77337 69569.939 69569.939 558.18735 558.18735 Loop time of 26.2715 on 1 procs for 1000 steps with 4000 atoms Performance: 3.289 ns/day, 7.298 hours/ns, 38.064 timesteps/s 38.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.704 | 25.704 | 25.704 | 0.0 | 97.84 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11882 | 0.11882 | 0.11882 | 0.0 | 0.45 Output | 3.3855e-05 | 3.3855e-05 | 3.3855e-05 | 0.0 | 0.00 Modify | 0.41816 | 0.41816 | 0.41816 | 0.0 | 1.59 Other | | 0.03066 | | | 0.12 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5862 ave 5862 max 5862 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535410 ave 535410 max 535410 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535410 Ave neighs/atom = 133.852 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 289.019854972466, Press = -281.033227497037 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -11104.011 -11104.011 -11255.866 -11255.866 293.77337 293.77337 69569.939 69569.939 558.18735 558.18735 6000 -11098.542 -11098.542 -11252.759 -11252.759 298.34439 298.34439 69619.952 69619.952 174.42581 174.42581 Loop time of 27.9972 on 1 procs for 1000 steps with 4000 atoms Performance: 3.086 ns/day, 7.777 hours/ns, 35.718 timesteps/s 36.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 27.555 | 27.555 | 27.555 | 0.0 | 98.42 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.038466 | 0.038466 | 0.038466 | 0.0 | 0.14 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.38326 | 0.38326 | 0.38326 | 0.0 | 1.37 Other | | 0.02036 | | | 0.07 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5865 ave 5865 max 5865 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535476 ave 535476 max 535476 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535476 Ave neighs/atom = 133.869 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.928154980841, Press = -47.744373544709 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -11098.542 -11098.542 -11252.759 -11252.759 298.34439 298.34439 69619.952 69619.952 174.42581 174.42581 7000 -11103.625 -11103.625 -11255.332 -11255.332 293.48708 293.48708 69596.731 69596.731 242.60127 242.60127 Loop time of 26.0682 on 1 procs for 1000 steps with 4000 atoms Performance: 3.314 ns/day, 7.241 hours/ns, 38.361 timesteps/s 38.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.439 | 25.439 | 25.439 | 0.0 | 97.59 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11792 | 0.11792 | 0.11792 | 0.0 | 0.45 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.47142 | 0.47142 | 0.47142 | 0.0 | 1.81 Other | | 0.04002 | | | 0.15 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5856 ave 5856 max 5856 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535414 ave 535414 max 535414 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535414 Ave neighs/atom = 133.853 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.948199500255, Press = -20.7200020751166 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -11103.625 -11103.625 -11255.332 -11255.332 293.48708 293.48708 69596.731 69596.731 242.60127 242.60127 8000 -11097.519 -11097.519 -11250.416 -11250.416 295.78919 295.78919 69743.041 69743.041 -1471.0445 -1471.0445 Loop time of 26.1545 on 1 procs for 1000 steps with 4000 atoms Performance: 3.303 ns/day, 7.265 hours/ns, 38.234 timesteps/s 38.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.629 | 25.629 | 25.629 | 0.0 | 97.99 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.095509 | 0.095509 | 0.095509 | 0.0 | 0.37 Output | 3.3855e-05 | 3.3855e-05 | 3.3855e-05 | 0.0 | 0.00 Modify | 0.39004 | 0.39004 | 0.39004 | 0.0 | 1.49 Other | | 0.0404 | | | 0.15 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5846 ave 5846 max 5846 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535382 ave 535382 max 535382 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535382 Ave neighs/atom = 133.845 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.140125482705, Press = -10.9193476759194 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -11097.519 -11097.519 -11250.416 -11250.416 295.78919 295.78919 69743.041 69743.041 -1471.0445 -1471.0445 9000 -11105.818 -11105.818 -11256.281 -11256.281 291.081 291.081 69676.415 69676.415 -1200.9675 -1200.9675 Loop time of 26.7568 on 1 procs for 1000 steps with 4000 atoms Performance: 3.229 ns/day, 7.432 hours/ns, 37.374 timesteps/s 37.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 26.076 | 26.076 | 26.076 | 0.0 | 97.46 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16804 | 0.16804 | 0.16804 | 0.0 | 0.63 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.46183 | 0.46183 | 0.46183 | 0.0 | 1.73 Other | | 0.05046 | | | 0.19 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5850 ave 5850 max 5850 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535078 ave 535078 max 535078 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535078 Ave neighs/atom = 133.769 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.811568129711, Press = -0.652692803057014 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -11105.818 -11105.818 -11256.281 -11256.281 291.081 291.081 69676.415 69676.415 -1200.9675 -1200.9675 10000 -11099.108 -11099.108 -11252.868 -11252.868 297.46027 297.46027 69600.36 69600.36 400.17074 400.17074 Loop time of 28.3248 on 1 procs for 1000 steps with 4000 atoms Performance: 3.050 ns/day, 7.868 hours/ns, 35.305 timesteps/s 35.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 27.638 | 27.638 | 27.638 | 0.0 | 97.58 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.098088 | 0.098088 | 0.098088 | 0.0 | 0.35 Output | 6.2943e-05 | 6.2943e-05 | 6.2943e-05 | 0.0 | 0.00 Modify | 0.52711 | 0.52711 | 0.52711 | 0.0 | 1.86 Other | | 0.06147 | | | 0.22 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5854 ave 5854 max 5854 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535254 ave 535254 max 535254 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535254 Ave neighs/atom = 133.814 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.717253354719, Press = -0.0870876719654771 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -11099.108 -11099.108 -11252.868 -11252.868 297.46027 297.46027 69600.36 69600.36 400.17074 400.17074 11000 -11098.591 -11098.591 -11252.615 -11252.615 297.97115 297.97115 69634.37 69634.37 -39.854366 -39.854366 Loop time of 27.8826 on 1 procs for 1000 steps with 4000 atoms Performance: 3.099 ns/day, 7.745 hours/ns, 35.865 timesteps/s 36.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 27.244 | 27.244 | 27.244 | 0.0 | 97.71 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.10791 | 0.10791 | 0.10791 | 0.0 | 0.39 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.42046 | 0.42046 | 0.42046 | 0.0 | 1.51 Other | | 0.1102 | | | 0.40 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5873 ave 5873 max 5873 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535376 ave 535376 max 535376 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535376 Ave neighs/atom = 133.844 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.611478552891, Press = -4.55130172101696 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -11098.591 -11098.591 -11252.615 -11252.615 297.97115 297.97115 69634.37 69634.37 -39.854366 -39.854366 12000 -11101.945 -11101.945 -11253.303 -11253.303 292.81244 292.81244 69641.138 69641.138 -321.70776 -321.70776 Loop time of 27.3067 on 1 procs for 1000 steps with 4000 atoms Performance: 3.164 ns/day, 7.585 hours/ns, 36.621 timesteps/s 37.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 26.726 | 26.726 | 26.726 | 0.0 | 97.87 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.078319 | 0.078319 | 0.078319 | 0.0 | 0.29 Output | 2.5988e-05 | 2.5988e-05 | 2.5988e-05 | 0.0 | 0.00 Modify | 0.38231 | 0.38231 | 0.38231 | 0.0 | 1.40 Other | | 0.1203 | | | 0.44 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5865 ave 5865 max 5865 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535210 ave 535210 max 535210 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535210 Ave neighs/atom = 133.803 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.937060812705, Press = -1.53016304464685 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -11101.945 -11101.945 -11253.303 -11253.303 292.81244 292.81244 69641.138 69641.138 -321.70776 -321.70776 13000 -11101.328 -11101.328 -11253.809 -11253.809 294.98464 294.98464 69613.367 69613.367 94.97634 94.97634 Loop time of 25.4331 on 1 procs for 1000 steps with 4000 atoms Performance: 3.397 ns/day, 7.065 hours/ns, 39.319 timesteps/s 40.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 24.744 | 24.744 | 24.744 | 0.0 | 97.29 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.058605 | 0.058605 | 0.058605 | 0.0 | 0.23 Output | 3.6001e-05 | 3.6001e-05 | 3.6001e-05 | 0.0 | 0.00 Modify | 0.59339 | 0.59339 | 0.59339 | 0.0 | 2.33 Other | | 0.03745 | | | 0.15 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5855 ave 5855 max 5855 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535260 ave 535260 max 535260 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535260 Ave neighs/atom = 133.815 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.09907608749, Press = -1.53700387799206 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -11101.328 -11101.328 -11253.809 -11253.809 294.98464 294.98464 69613.367 69613.367 94.97634 94.97634 14000 -11097.72 -11097.72 -11252.68 -11252.68 299.78111 299.78111 69588.584 69588.584 678.6743 678.6743 Loop time of 25.9303 on 1 procs for 1000 steps with 4000 atoms Performance: 3.332 ns/day, 7.203 hours/ns, 38.565 timesteps/s 39.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.285 | 25.285 | 25.285 | 0.0 | 97.51 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.12512 | 0.12512 | 0.12512 | 0.0 | 0.48 Output | 3.4094e-05 | 3.4094e-05 | 3.4094e-05 | 0.0 | 0.00 Modify | 0.48008 | 0.48008 | 0.48008 | 0.0 | 1.85 Other | | 0.04014 | | | 0.15 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5853 ave 5853 max 5853 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535486 ave 535486 max 535486 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535486 Ave neighs/atom = 133.871 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.136879697412, Press = -1.83737735888289 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -11097.72 -11097.72 -11252.68 -11252.68 299.78111 299.78111 69588.584 69588.584 678.6743 678.6743 15000 -11102.338 -11102.338 -11254.852 -11254.852 295.04982 295.04982 69533.196 69533.196 1262.2254 1262.2254 Loop time of 26.7885 on 1 procs for 1000 steps with 4000 atoms Performance: 3.225 ns/day, 7.441 hours/ns, 37.329 timesteps/s 37.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 26.227 | 26.227 | 26.227 | 0.0 | 97.90 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.098137 | 0.098137 | 0.098137 | 0.0 | 0.37 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.40312 | 0.40312 | 0.40312 | 0.0 | 1.50 Other | | 0.0603 | | | 0.23 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5855 ave 5855 max 5855 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535286 ave 535286 max 535286 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535286 Ave neighs/atom = 133.821 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.342073045669, Press = -2.04738874676159 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -11102.338 -11102.338 -11254.852 -11254.852 295.04982 295.04982 69533.196 69533.196 1262.2254 1262.2254 16000 -11099.197 -11099.197 -11252.219 -11252.219 296.0304 296.0304 69634.285 69634.285 14.488858 14.488858 Loop time of 28.0997 on 1 procs for 1000 steps with 4000 atoms Performance: 3.075 ns/day, 7.805 hours/ns, 35.588 timesteps/s 38.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 27.343 | 27.343 | 27.343 | 0.0 | 97.31 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17563 | 0.17563 | 0.17563 | 0.0 | 0.63 Output | 4.9829e-05 | 4.9829e-05 | 4.9829e-05 | 0.0 | 0.00 Modify | 0.53961 | 0.53961 | 0.53961 | 0.0 | 1.92 Other | | 0.04135 | | | 0.15 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5870 ave 5870 max 5870 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535650 ave 535650 max 535650 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535650 Ave neighs/atom = 133.912 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.29699194256, Press = -4.01924610001133 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -11099.197 -11099.197 -11252.219 -11252.219 296.0304 296.0304 69634.285 69634.285 14.488858 14.488858 17000 -11107.653 -11107.653 -11253.143 -11253.143 281.46102 281.46102 69579.511 69579.511 653.77498 653.77498 Loop time of 26.1708 on 1 procs for 1000 steps with 4000 atoms Performance: 3.301 ns/day, 7.270 hours/ns, 38.211 timesteps/s 38.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.608 | 25.608 | 25.608 | 0.0 | 97.85 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.098147 | 0.098147 | 0.098147 | 0.0 | 0.38 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.40292 | 0.40292 | 0.40292 | 0.0 | 1.54 Other | | 0.06133 | | | 0.23 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5854 ave 5854 max 5854 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535296 ave 535296 max 535296 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535296 Ave neighs/atom = 133.824 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.174925766666, Press = 0.317756545734187 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -11107.653 -11107.653 -11253.143 -11253.143 281.46102 281.46102 69579.511 69579.511 653.77498 653.77498 18000 -11095.966 -11095.966 -11249.854 -11249.854 297.70778 297.70778 69559.613 69559.613 1580.2195 1580.2195 Loop time of 26.241 on 1 procs for 1000 steps with 4000 atoms Performance: 3.293 ns/day, 7.289 hours/ns, 38.108 timesteps/s 38.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.662 | 25.662 | 25.662 | 0.0 | 97.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15796 | 0.15796 | 0.15796 | 0.0 | 0.60 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.38118 | 0.38118 | 0.38118 | 0.0 | 1.45 Other | | 0.04025 | | | 0.15 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5855 ave 5855 max 5855 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535526 ave 535526 max 535526 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535526 Ave neighs/atom = 133.881 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.160636371232, Press = -1.16360172668896 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -11095.966 -11095.966 -11249.854 -11249.854 297.70778 297.70778 69559.613 69559.613 1580.2195 1580.2195 19000 -11102.339 -11102.339 -11253.128 -11253.128 291.71246 291.71246 69612.57 69612.57 214.05674 214.05674 Loop time of 26.104 on 1 procs for 1000 steps with 4000 atoms Performance: 3.310 ns/day, 7.251 hours/ns, 38.308 timesteps/s 38.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.521 | 25.521 | 25.521 | 0.0 | 97.76 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.057678 | 0.057678 | 0.057678 | 0.0 | 0.22 Output | 2.718e-05 | 2.718e-05 | 2.718e-05 | 0.0 | 0.00 Modify | 0.46548 | 0.46548 | 0.46548 | 0.0 | 1.78 Other | | 0.06029 | | | 0.23 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5855 ave 5855 max 5855 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535476 ave 535476 max 535476 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535476 Ave neighs/atom = 133.869 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.306305551678, Press = -0.815597992725393 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -11102.339 -11102.339 -11253.128 -11253.128 291.71246 291.71246 69612.57 69612.57 214.05674 214.05674 20000 -11105.287 -11105.287 -11256.409 -11256.409 292.35624 292.35624 69607.796 69607.796 -114.82479 -114.82479 Loop time of 27.0397 on 1 procs for 1000 steps with 4000 atoms Performance: 3.195 ns/day, 7.511 hours/ns, 36.983 timesteps/s 37.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 26.418 | 26.418 | 26.418 | 0.0 | 97.70 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.09865 | 0.09865 | 0.09865 | 0.0 | 0.36 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.50256 | 0.50256 | 0.50256 | 0.0 | 1.86 Other | | 0.02042 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5856 ave 5856 max 5856 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535384 ave 535384 max 535384 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535384 Ave neighs/atom = 133.846 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.264439483177, Press = -2.38786792684769 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -11105.287 -11105.287 -11256.409 -11256.409 292.35624 292.35624 69607.796 69607.796 -114.82479 -114.82479 21000 -11096.904 -11096.904 -11251.092 -11251.092 298.28656 298.28656 69706.886 69706.886 -1004.4882 -1004.4882 Loop time of 26.3679 on 1 procs for 1000 steps with 4000 atoms Performance: 3.277 ns/day, 7.324 hours/ns, 37.925 timesteps/s 38.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.926 | 25.926 | 25.926 | 0.0 | 98.33 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.058377 | 0.058377 | 0.058377 | 0.0 | 0.22 Output | 6.0081e-05 | 6.0081e-05 | 6.0081e-05 | 0.0 | 0.00 Modify | 0.36282 | 0.36282 | 0.36282 | 0.0 | 1.38 Other | | 0.02036 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5858 ave 5858 max 5858 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535604 ave 535604 max 535604 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535604 Ave neighs/atom = 133.901 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.175848974818, Press = -1.57109024297781 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -11096.904 -11096.904 -11251.092 -11251.092 298.28656 298.28656 69706.886 69706.886 -1004.4882 -1004.4882 22000 -11102.255 -11102.255 -11251.991 -11251.991 289.67376 289.67376 69672.338 69672.338 -625.77066 -625.77066 Loop time of 26.2366 on 1 procs for 1000 steps with 4000 atoms Performance: 3.293 ns/day, 7.288 hours/ns, 38.115 timesteps/s 38.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.565 | 25.565 | 25.565 | 0.0 | 97.44 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11815 | 0.11815 | 0.11815 | 0.0 | 0.45 Output | 2.6941e-05 | 2.6941e-05 | 2.6941e-05 | 0.0 | 0.00 Modify | 0.4933 | 0.4933 | 0.4933 | 0.0 | 1.88 Other | | 0.06041 | | | 0.23 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5872 ave 5872 max 5872 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535040 ave 535040 max 535040 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535040 Ave neighs/atom = 133.76 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.22767153348, Press = -1.06154855616809 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -11102.255 -11102.255 -11251.991 -11251.991 289.67376 289.67376 69672.338 69672.338 -625.77066 -625.77066 23000 -11102.098 -11102.098 -11254.759 -11254.759 295.33214 295.33214 69687.547 69687.547 -1220.6585 -1220.6585 Loop time of 25.6567 on 1 procs for 1000 steps with 4000 atoms Performance: 3.368 ns/day, 7.127 hours/ns, 38.976 timesteps/s 39.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.237 | 25.237 | 25.237 | 0.0 | 98.36 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.097859 | 0.097859 | 0.097859 | 0.0 | 0.38 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.28172 | 0.28172 | 0.28172 | 0.0 | 1.10 Other | | 0.04005 | | | 0.16 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5850 ave 5850 max 5850 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535152 ave 535152 max 535152 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535152 Ave neighs/atom = 133.788 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.237937166912, Press = -1.74724537758642 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 23000 -11102.098 -11102.098 -11254.759 -11254.759 295.33214 295.33214 69687.547 69687.547 -1220.6585 -1220.6585 24000 -11103.343 -11103.343 -11252.991 -11252.991 289.50396 289.50396 69660.694 69660.694 -577.06633 -577.06633 Loop time of 25.0723 on 1 procs for 1000 steps with 4000 atoms Performance: 3.446 ns/day, 6.965 hours/ns, 39.885 timesteps/s 39.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 24.381 | 24.381 | 24.381 | 0.0 | 97.24 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11817 | 0.11817 | 0.11817 | 0.0 | 0.47 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.44293 | 0.44293 | 0.44293 | 0.0 | 1.77 Other | | 0.1305 | | | 0.52 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5849 ave 5849 max 5849 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535242 ave 535242 max 535242 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535242 Ave neighs/atom = 133.81 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.114929518272, Press = -0.58892441345113 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 24000 -11103.343 -11103.343 -11252.991 -11252.991 289.50396 289.50396 69660.694 69660.694 -577.06633 -577.06633 25000 -11097.175 -11097.175 -11250.035 -11250.035 295.71782 295.71782 69722.838 69722.838 -1121.5167 -1121.5167 Loop time of 25.3677 on 1 procs for 1000 steps with 4000 atoms Performance: 3.406 ns/day, 7.047 hours/ns, 39.420 timesteps/s 39.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 24.737 | 24.737 | 24.737 | 0.0 | 97.51 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.1381 | 0.1381 | 0.1381 | 0.0 | 0.54 Output | 2.9087e-05 | 2.9087e-05 | 2.9087e-05 | 0.0 | 0.00 Modify | 0.45253 | 0.45253 | 0.45253 | 0.0 | 1.78 Other | | 0.04018 | | | 0.16 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5846 ave 5846 max 5846 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535244 ave 535244 max 535244 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535244 Ave neighs/atom = 133.811 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.179758030571, Press = -2.05585861797753 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 25000 -11097.175 -11097.175 -11250.035 -11250.035 295.71782 295.71782 69722.838 69722.838 -1121.5167 -1121.5167 26000 -11103.198 -11103.198 -11250.683 -11250.683 285.31999 285.31999 69669.494 69669.494 -462.30124 -462.30124 Loop time of 24.8971 on 1 procs for 1000 steps with 4000 atoms Performance: 3.470 ns/day, 6.916 hours/ns, 40.165 timesteps/s 40.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 24.3 | 24.3 | 24.3 | 0.0 | 97.60 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13826 | 0.13826 | 0.13826 | 0.0 | 0.56 Output | 3.4094e-05 | 3.4094e-05 | 3.4094e-05 | 0.0 | 0.00 Modify | 0.43884 | 0.43884 | 0.43884 | 0.0 | 1.76 Other | | 0.02021 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5856 ave 5856 max 5856 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 535098 ave 535098 max 535098 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 535098 Ave neighs/atom = 133.774 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 69629.3263641564 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0