# Variables that can be adjusted by kim-lammps-preprocessor to switch unit sets for # Simulator Models variable _u_distance equal 1.0 variable _u_energy equal 1.0 variable _u_mass equal 1.0 variable _u_time equal 1.0 variable _u_pressure equal 1.0 variable _u_temperature equal 1.0 # This line may be swapped out by kim-lammps-preprocessor if running against a Simulator # Model whose atom_style is not 'atomic' atom_style atomic # periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.063553899526596*${_u_distance} variable latticeconst_converted equal 4.063553899526596*1 lattice fcc ${latticeconst_converted} lattice fcc 4.0635538995266 Lattice spacing in x,y,z = 4.06355 4.06355 4.06355 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (40.6355 40.6355 40.6355) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms create_atoms CPU = 0.000477076 secs variable mass_converted equal 107.8682*${_u_mass} variable mass_converted equal 107.8682*1 # specify which KIM Model to use pair_style kim EMT_Asap_Standard_JacobsenStoltzeNorskov_1996_Ag__MO_303974873468_001 pair_coeff * * Ag mass 1 ${mass_converted} mass 1 107.8682 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 67099.3130554549 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 67099.3130554549/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 67099.3130554549/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 67099.3130554549/(1*1*${_u_distance}) variable V0_metal equal 67099.3130554549/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 67099.3130554549*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 67099.3130554549 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.61876 ghost atom cutoff = 7.61876 binsize = 3.80938, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.61876 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -11700.272 -11700.272 -11841.467 -11841.467 273.15 273.15 67099.313 67099.313 2247.5924 2247.5924 1000 -11540.589 -11540.589 -11685.374 -11685.374 280.0958 280.0958 68567.311 68567.311 -430.64581 -430.64581 Loop time of 76.2112 on 1 procs for 1000 steps with 4000 atoms Performance: 1.134 ns/day, 21.170 hours/ns, 13.121 timesteps/s 33.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 75.578 | 75.578 | 75.578 | 0.0 | 99.17 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13836 | 0.13836 | 0.13836 | 0.0 | 0.18 Output | 6.1989e-05 | 6.1989e-05 | 6.1989e-05 | 0.0 | 0.00 Modify | 0.45521 | 0.45521 | 0.45521 | 0.0 | 0.60 Other | | 0.03982 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 536000 ave 536000 max 536000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 536000 Ave neighs/atom = 134 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -11540.589 -11540.589 -11685.374 -11685.374 280.0958 280.0958 68567.311 68567.311 -430.64581 -430.64581 2000 -11560.048 -11560.048 -11697.562 -11697.562 266.02984 266.02984 68376.803 68376.803 739.69773 739.69773 Loop time of 80.5757 on 1 procs for 1000 steps with 4000 atoms Performance: 1.072 ns/day, 22.382 hours/ns, 12.411 timesteps/s 33.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 79.74 | 79.74 | 79.74 | 0.0 | 98.96 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17945 | 0.17945 | 0.17945 | 0.0 | 0.22 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 0.61634 | 0.61634 | 0.61634 | 0.0 | 0.76 Other | | 0.04038 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 415968 ave 415968 max 415968 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 415968 Ave neighs/atom = 103.992 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -11560.048 -11560.048 -11697.562 -11697.562 266.02984 266.02984 68376.803 68376.803 739.69773 739.69773 3000 -11549.769 -11549.769 -11690.862 -11690.862 272.95517 272.95517 68430.612 68430.612 844.30491 844.30491 Loop time of 80.6323 on 1 procs for 1000 steps with 4000 atoms Performance: 1.072 ns/day, 22.398 hours/ns, 12.402 timesteps/s 33.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 80.067 | 80.067 | 80.067 | 0.0 | 99.30 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.098634 | 0.098634 | 0.098634 | 0.0 | 0.12 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.44623 | 0.44623 | 0.44623 | 0.0 | 0.55 Other | | 0.02006 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 419192 ave 419192 max 419192 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 419192 Ave neighs/atom = 104.798 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -11549.769 -11549.769 -11690.862 -11690.862 272.95517 272.95517 68430.612 68430.612 844.30491 844.30491 4000 -11553.58 -11553.58 -11694.989 -11694.989 273.56554 273.56554 68408.378 68408.378 691.73202 691.73202 Loop time of 80.6435 on 1 procs for 1000 steps with 4000 atoms Performance: 1.071 ns/day, 22.401 hours/ns, 12.400 timesteps/s 33.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 80.069 | 80.069 | 80.069 | 0.0 | 99.29 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.07846 | 0.07846 | 0.07846 | 0.0 | 0.10 Output | 3.6001e-05 | 3.6001e-05 | 3.6001e-05 | 0.0 | 0.00 Modify | 0.45581 | 0.45581 | 0.45581 | 0.0 | 0.57 Other | | 0.03985 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 418358 ave 418358 max 418358 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 418358 Ave neighs/atom = 104.59 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -11553.58 -11553.58 -11694.989 -11694.989 273.56554 273.56554 68408.378 68408.378 691.73202 691.73202 5000 -11553.827 -11553.827 -11693.828 -11693.828 270.84122 270.84122 68533.878 68533.878 -971.82916 -971.82916 Loop time of 80.6207 on 1 procs for 1000 steps with 4000 atoms Performance: 1.072 ns/day, 22.395 hours/ns, 12.404 timesteps/s 33.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 79.774 | 79.774 | 79.774 | 0.0 | 98.95 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.2089 | 0.2089 | 0.2089 | 0.0 | 0.26 Output | 3.4094e-05 | 3.4094e-05 | 3.4094e-05 | 0.0 | 0.00 Modify | 0.61711 | 0.61711 | 0.61711 | 0.0 | 0.77 Other | | 0.02041 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 418412 ave 418412 max 418412 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 418412 Ave neighs/atom = 104.603 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 271.774407343989, Press = -134.583816094778 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -11553.827 -11553.827 -11693.828 -11693.828 270.84122 270.84122 68533.878 68533.878 -971.82916 -971.82916 6000 -11551.998 -11551.998 -11694.259 -11694.259 275.212 275.212 68503.318 68503.318 -587.87225 -587.87225 Loop time of 79.8093 on 1 procs for 1000 steps with 4000 atoms Performance: 1.083 ns/day, 22.169 hours/ns, 12.530 timesteps/s 33.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 79.069 | 79.069 | 79.069 | 0.0 | 99.07 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11896 | 0.11896 | 0.11896 | 0.0 | 0.15 Output | 2.6941e-05 | 2.6941e-05 | 2.6941e-05 | 0.0 | 0.00 Modify | 0.48129 | 0.48129 | 0.48129 | 0.0 | 0.60 Other | | 0.1403 | | | 0.18 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 416008 ave 416008 max 416008 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 416008 Ave neighs/atom = 104.002 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.271834235755, Press = -9.20347974735599 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -11551.998 -11551.998 -11694.259 -11694.259 275.212 275.212 68503.318 68503.318 -587.87225 -587.87225 7000 -11556.385 -11556.385 -11695.532 -11695.532 269.18785 269.18785 68486.29 68486.29 -521.70107 -521.70107 Loop time of 77.7964 on 1 procs for 1000 steps with 4000 atoms Performance: 1.111 ns/day, 21.610 hours/ns, 12.854 timesteps/s 34.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 77.138 | 77.138 | 77.138 | 0.0 | 99.15 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17863 | 0.17863 | 0.17863 | 0.0 | 0.23 Output | 3.3855e-05 | 3.3855e-05 | 3.3855e-05 | 0.0 | 0.00 Modify | 0.43925 | 0.43925 | 0.43925 | 0.0 | 0.56 Other | | 0.04011 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 416416 ave 416416 max 416416 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 416416 Ave neighs/atom = 104.104 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.10800690217, Press = 11.0630836758498 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -11556.385 -11556.385 -11695.532 -11695.532 269.18785 269.18785 68486.29 68486.29 -521.70107 -521.70107 8000 -11550.459 -11550.459 -11693.051 -11693.051 275.8544 275.8544 68416.798 68416.798 811.89036 811.89036 Loop time of 76.8544 on 1 procs for 1000 steps with 4000 atoms Performance: 1.124 ns/day, 21.348 hours/ns, 13.012 timesteps/s 34.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 76.356 | 76.356 | 76.356 | 0.0 | 99.35 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.078787 | 0.078787 | 0.078787 | 0.0 | 0.10 Output | 3.4094e-05 | 3.4094e-05 | 3.4094e-05 | 0.0 | 0.00 Modify | 0.39976 | 0.39976 | 0.39976 | 0.0 | 0.52 Other | | 0.01993 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 416640 ave 416640 max 416640 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 416640 Ave neighs/atom = 104.16 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.104017853129, Press = 10.04464664141 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -11550.459 -11550.459 -11693.051 -11693.051 275.8544 275.8544 68416.798 68416.798 811.89036 811.89036 9000 -11554.239 -11554.239 -11693.597 -11693.597 269.59884 269.59884 68408.69 68408.69 826.64052 826.64052 Loop time of 73.509 on 1 procs for 1000 steps with 4000 atoms Performance: 1.175 ns/day, 20.419 hours/ns, 13.604 timesteps/s 36.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 73.071 | 73.071 | 73.071 | 0.0 | 99.40 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.03849 | 0.03849 | 0.03849 | 0.0 | 0.05 Output | 3.3855e-05 | 3.3855e-05 | 3.3855e-05 | 0.0 | 0.00 Modify | 0.37983 | 0.37983 | 0.37983 | 0.0 | 0.52 Other | | 0.01983 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 418334 ave 418334 max 418334 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 418334 Ave neighs/atom = 104.584 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.892386125151, Press = -1.1928001052202 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -11554.239 -11554.239 -11693.597 -11693.597 269.59884 269.59884 68408.69 68408.69 826.64052 826.64052 10000 -11548.652 -11548.652 -11693.617 -11693.617 280.44432 280.44432 68446.517 68446.517 399.87484 399.87484 Loop time of 73.6787 on 1 procs for 1000 steps with 4000 atoms Performance: 1.173 ns/day, 20.466 hours/ns, 13.572 timesteps/s 36.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 73.039 | 73.039 | 73.039 | 0.0 | 99.13 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.058547 | 0.058547 | 0.058547 | 0.0 | 0.08 Output | 4.9114e-05 | 4.9114e-05 | 4.9114e-05 | 0.0 | 0.00 Modify | 0.56079 | 0.56079 | 0.56079 | 0.0 | 0.76 Other | | 0.02012 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 418454 ave 418454 max 418454 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 418454 Ave neighs/atom = 104.614 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.035047279271, Press = 0.791113231297491 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -11548.652 -11548.652 -11693.617 -11693.617 280.44432 280.44432 68446.517 68446.517 399.87484 399.87484 11000 -11554.415 -11554.415 -11695.714 -11695.714 273.35226 273.35226 68392.458 68392.458 862.47096 862.47096 Loop time of 71.0051 on 1 procs for 1000 steps with 4000 atoms Performance: 1.217 ns/day, 19.724 hours/ns, 14.083 timesteps/s 37.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 70.359 | 70.359 | 70.359 | 0.0 | 99.09 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13848 | 0.13848 | 0.13848 | 0.0 | 0.20 Output | 3.8147e-05 | 3.8147e-05 | 3.8147e-05 | 0.0 | 0.00 Modify | 0.44707 | 0.44707 | 0.44707 | 0.0 | 0.63 Other | | 0.06028 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 417896 ave 417896 max 417896 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 417896 Ave neighs/atom = 104.474 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.233036014796, Press = -2.63334720880209 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -11554.415 -11554.415 -11695.714 -11695.714 273.35226 273.35226 68392.458 68392.458 862.47096 862.47096 12000 -11549.104 -11549.104 -11690.479 -11690.479 273.49941 273.49941 68575.3 68575.3 -1171.9806 -1171.9806 Loop time of 71.7318 on 1 procs for 1000 steps with 4000 atoms Performance: 1.204 ns/day, 19.925 hours/ns, 13.941 timesteps/s 37.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 71.203 | 71.203 | 71.203 | 0.0 | 99.26 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.058523 | 0.058523 | 0.058523 | 0.0 | 0.08 Output | 2.6941e-05 | 2.6941e-05 | 2.6941e-05 | 0.0 | 0.00 Modify | 0.41029 | 0.41029 | 0.41029 | 0.0 | 0.57 Other | | 0.06012 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 418888 ave 418888 max 418888 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 418888 Ave neighs/atom = 104.722 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.316837507773, Press = -4.10101490882607 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -11549.104 -11549.104 -11690.479 -11690.479 273.49941 273.49941 68575.3 68575.3 -1171.9806 -1171.9806 13000 -11549.693 -11549.693 -11693.816 -11693.816 278.81609 278.81609 68439.941 68439.941 419.65357 419.65357 Loop time of 70.8236 on 1 procs for 1000 steps with 4000 atoms Performance: 1.220 ns/day, 19.673 hours/ns, 14.120 timesteps/s 37.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 70.306 | 70.306 | 70.306 | 0.0 | 99.27 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.076282 | 0.076282 | 0.076282 | 0.0 | 0.11 Output | 3.3855e-05 | 3.3855e-05 | 3.3855e-05 | 0.0 | 0.00 Modify | 0.3713 | 0.3713 | 0.3713 | 0.0 | 0.52 Other | | 0.0701 | | | 0.10 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 415236 ave 415236 max 415236 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 415236 Ave neighs/atom = 103.809 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.36240558936, Press = 0.963428782933078 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -11549.693 -11549.693 -11693.816 -11693.816 278.81609 278.81609 68439.941 68439.941 419.65357 419.65357 14000 -11552.872 -11552.872 -11692.932 -11692.932 270.95584 270.95584 68586.301 68586.301 -1672.9178 -1672.9178 Loop time of 67.4472 on 1 procs for 1000 steps with 4000 atoms Performance: 1.281 ns/day, 18.735 hours/ns, 14.826 timesteps/s 39.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 66.979 | 66.979 | 66.979 | 0.0 | 99.31 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.058379 | 0.058379 | 0.058379 | 0.0 | 0.09 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.38961 | 0.38961 | 0.38961 | 0.0 | 0.58 Other | | 0.01995 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 417940 ave 417940 max 417940 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 417940 Ave neighs/atom = 104.485 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.518935978704, Press = -1.20334478945919 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -11552.872 -11552.872 -11692.932 -11692.932 270.95584 270.95584 68586.301 68586.301 -1672.9178 -1672.9178 15000 -11555.216 -11555.216 -11696.577 -11696.577 273.47316 273.47316 68397.748 68397.748 612.64134 612.64134 Loop time of 71.3235 on 1 procs for 1000 steps with 4000 atoms Performance: 1.211 ns/day, 19.812 hours/ns, 14.021 timesteps/s 37.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 70.824 | 70.824 | 70.824 | 0.0 | 99.30 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13864 | 0.13864 | 0.13864 | 0.0 | 0.19 Output | 2.8133e-05 | 2.8133e-05 | 2.8133e-05 | 0.0 | 0.00 Modify | 0.34093 | 0.34093 | 0.34093 | 0.0 | 0.48 Other | | 0.02011 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 414570 ave 414570 max 414570 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 414570 Ave neighs/atom = 103.642 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.486389861005, Press = -0.864836419986174 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -11555.216 -11555.216 -11696.577 -11696.577 273.47316 273.47316 68397.748 68397.748 612.64134 612.64134 16000 -11549.206 -11549.206 -11692.22 -11692.22 276.66935 276.66935 68537.089 68537.089 -837.97226 -837.97226 Loop time of 68.684 on 1 procs for 1000 steps with 4000 atoms Performance: 1.258 ns/day, 19.079 hours/ns, 14.559 timesteps/s 38.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 68.226 | 68.226 | 68.226 | 0.0 | 99.33 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11869 | 0.11869 | 0.11869 | 0.0 | 0.17 Output | 2.718e-05 | 2.718e-05 | 2.718e-05 | 0.0 | 0.00 Modify | 0.29947 | 0.29947 | 0.29947 | 0.0 | 0.44 Other | | 0.04004 | | | 0.06 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 418598 ave 418598 max 418598 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 418598 Ave neighs/atom = 104.65 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.576806150042, Press = -1.65266266087022 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -11549.206 -11549.206 -11692.22 -11692.22 276.66935 276.66935 68537.089 68537.089 -837.97226 -837.97226 17000 -11556.418 -11556.418 -11696.931 -11696.931 271.83206 271.83206 68412.542 68412.542 401.39404 401.39404 Loop time of 64.2949 on 1 procs for 1000 steps with 4000 atoms Performance: 1.344 ns/day, 17.860 hours/ns, 15.553 timesteps/s 41.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 63.816 | 63.816 | 63.816 | 0.0 | 99.26 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.058309 | 0.058309 | 0.058309 | 0.0 | 0.09 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.32999 | 0.32999 | 0.32999 | 0.0 | 0.51 Other | | 0.09022 | | | 0.14 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 415736 ave 415736 max 415736 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 415736 Ave neighs/atom = 103.934 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.576075175573, Press = 2.62275193276828 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -11556.418 -11556.418 -11696.931 -11696.931 271.83206 271.83206 68412.542 68412.542 401.39404 401.39404 18000 -11553.101 -11553.101 -11693.852 -11693.852 272.29081 272.29081 68416.466 68416.466 690.86778 690.86778 Loop time of 67.9087 on 1 procs for 1000 steps with 4000 atoms Performance: 1.272 ns/day, 18.864 hours/ns, 14.726 timesteps/s 39.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 67.129 | 67.129 | 67.129 | 0.0 | 98.85 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17886 | 0.17886 | 0.17886 | 0.0 | 0.26 Output | 3.1948e-05 | 3.1948e-05 | 3.1948e-05 | 0.0 | 0.00 Modify | 0.54022 | 0.54022 | 0.54022 | 0.0 | 0.80 Other | | 0.06073 | | | 0.09 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 418388 ave 418388 max 418388 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 418388 Ave neighs/atom = 104.597 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.45923157963, Press = -1.02801010838339 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -11553.101 -11553.101 -11693.852 -11693.852 272.29081 272.29081 68416.466 68416.466 690.86778 690.86778 19000 -11557.386 -11557.386 -11698.379 -11698.379 272.76042 272.76042 68473.907 68473.907 -668.21353 -668.21353 Loop time of 74.7767 on 1 procs for 1000 steps with 4000 atoms Performance: 1.155 ns/day, 20.771 hours/ns, 13.373 timesteps/s 35.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 74.16 | 74.16 | 74.16 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11514 | 0.11514 | 0.11514 | 0.0 | 0.15 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.4012 | 0.4012 | 0.4012 | 0.0 | 0.54 Other | | 0.1003 | | | 0.13 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 418670 ave 418670 max 418670 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 418670 Ave neighs/atom = 104.668 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.387810228128, Press = -0.918760945889241 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -11557.386 -11557.386 -11698.379 -11698.379 272.76042 272.76042 68473.907 68473.907 -668.21353 -668.21353 20000 -11549.04 -11549.04 -11694.791 -11694.791 281.96403 281.96403 68518.832 68518.832 -806.36177 -806.36177 Loop time of 75.272 on 1 procs for 1000 steps with 4000 atoms Performance: 1.148 ns/day, 20.909 hours/ns, 13.285 timesteps/s 35.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 74.674 | 74.674 | 74.674 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.078324 | 0.078324 | 0.078324 | 0.0 | 0.10 Output | 3.3855e-05 | 3.3855e-05 | 3.3855e-05 | 0.0 | 0.00 Modify | 0.45817 | 0.45817 | 0.45817 | 0.0 | 0.61 Other | | 0.06154 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 416368 ave 416368 max 416368 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 416368 Ave neighs/atom = 104.092 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.315658774599, Press = -0.64376459923764 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -11549.04 -11549.04 -11694.791 -11694.791 281.96403 281.96403 68518.832 68518.832 -806.36177 -806.36177 21000 -11555.405 -11555.405 -11694.598 -11694.598 269.27855 269.27855 68492.377 68492.377 -519.70659 -519.70659 Loop time of 76.4507 on 1 procs for 1000 steps with 4000 atoms Performance: 1.130 ns/day, 21.236 hours/ns, 13.080 timesteps/s 34.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 75.793 | 75.793 | 75.793 | 0.0 | 99.14 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15876 | 0.15876 | 0.15876 | 0.0 | 0.21 Output | 3.9101e-05 | 3.9101e-05 | 3.9101e-05 | 0.0 | 0.00 Modify | 0.43917 | 0.43917 | 0.43917 | 0.0 | 0.57 Other | | 0.05992 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 415866 ave 415866 max 415866 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 415866 Ave neighs/atom = 103.966 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.341123586478, Press = 0.964026234506669 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -11555.405 -11555.405 -11694.598 -11694.598 269.27855 269.27855 68492.377 68492.377 -519.70659 -519.70659 22000 -11556.289 -11556.289 -11697.664 -11697.664 273.49955 273.49955 68329.708 68329.708 1493.1952 1493.1952 Loop time of 74.5166 on 1 procs for 1000 steps with 4000 atoms Performance: 1.159 ns/day, 20.699 hours/ns, 13.420 timesteps/s 35.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 73.921 | 73.921 | 73.921 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.09825 | 0.09825 | 0.09825 | 0.0 | 0.13 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.43701 | 0.43701 | 0.43701 | 0.0 | 0.59 Other | | 0.06005 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 416612 ave 416612 max 416612 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 416612 Ave neighs/atom = 104.153 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.338451413562, Press = 1.49982185969507 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -11556.289 -11556.289 -11697.664 -11697.664 273.49955 273.49955 68329.708 68329.708 1493.1952 1493.1952 23000 -11550.948 -11550.948 -11692.144 -11692.144 273.15428 273.15428 68468.243 68468.243 134.75623 134.75623 Loop time of 71.9297 on 1 procs for 1000 steps with 4000 atoms Performance: 1.201 ns/day, 19.980 hours/ns, 13.902 timesteps/s 37.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 71.432 | 71.432 | 71.432 | 0.0 | 99.31 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.098331 | 0.098331 | 0.098331 | 0.0 | 0.14 Output | 3.4094e-05 | 3.4094e-05 | 3.4094e-05 | 0.0 | 0.00 Modify | 0.37964 | 0.37964 | 0.37964 | 0.0 | 0.53 Other | | 0.01993 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 419932 ave 419932 max 419932 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 419932 Ave neighs/atom = 104.983 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.280680160994, Press = -1.19076664210306 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 23000 -11550.948 -11550.948 -11692.144 -11692.144 273.15428 273.15428 68468.243 68468.243 134.75623 134.75623 24000 -11556.514 -11556.514 -11698.299 -11698.299 274.29286 274.29286 68471.603 68471.603 -617.53943 -617.53943 Loop time of 69.4891 on 1 procs for 1000 steps with 4000 atoms Performance: 1.243 ns/day, 19.303 hours/ns, 14.391 timesteps/s 38.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 68.921 | 68.921 | 68.921 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.077919 | 0.077919 | 0.077919 | 0.0 | 0.11 Output | 2.5988e-05 | 2.5988e-05 | 2.5988e-05 | 0.0 | 0.00 Modify | 0.47053 | 0.47053 | 0.47053 | 0.0 | 0.68 Other | | 0.01984 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 417264 ave 417264 max 417264 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 417264 Ave neighs/atom = 104.316 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 68460.1883178285 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0