# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.7913857132196505*${_u_distance} variable latticeconst_converted equal 5.7913857132196505*1 lattice bcc ${latticeconst_converted} lattice bcc 5.79138571321965 Lattice spacing in x,y,z = 5.79139 5.79139 5.79139 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (57.9139 57.9139 57.9139) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms create_atoms CPU = 0.000478983 secs variable mass_converted equal 85.4678*${_u_mass} variable mass_converted equal 85.4678*1 kim_interactions Rb #=== BEGIN kim_interactions ================================== pair_style kim Morse_Shifted_GirifalcoWeizer_1959LowCutoff_Rb__MO_754498969542_004 pair_coeff * * Rb #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 85.4678 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 194243.936722195 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 194243.936722195/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 194243.936722195/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 194243.936722195/(1*1*${_u_distance}) variable V0_metal equal 194243.936722195/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 194243.936722195*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 194243.936722195 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 21.5283 ghost atom cutoff = 21.5283 binsize = 10.7642, bins = 6 6 6 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 21.5283 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 6.659 | 6.659 | 6.659 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -1487.6416 -1487.6416 -1563.389 -1563.389 293.15 293.15 194243.94 194243.94 416.52253 416.52253 1000 -1388.6427 -1388.6427 -1466.5917 -1466.5917 301.67058 301.67058 209686.27 209686.27 -70.146127 -70.146127 Loop time of 46.3161 on 1 procs for 1000 steps with 2000 atoms Performance: 1.865 ns/day, 12.866 hours/ns, 21.591 timesteps/s 63.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 45.654 | 45.654 | 45.654 | 0.0 | 98.57 Neigh | 0.30966 | 0.30966 | 0.30966 | 0.0 | 0.67 Comm | 0.11784 | 0.11784 | 0.11784 | 0.0 | 0.25 Output | 5.2929e-05 | 5.2929e-05 | 5.2929e-05 | 0.0 | 0.00 Modify | 0.18373 | 0.18373 | 0.18373 | 0.0 | 0.40 Other | | 0.05101 | | | 0.11 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8584 ave 8584 max 8584 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 785804 ave 785804 max 785804 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 785804 Ave neighs/atom = 392.902 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -1388.6427 -1388.6427 -1466.5917 -1466.5917 301.67058 301.67058 209686.27 209686.27 -70.146127 -70.146127 2000 -1401.1742 -1401.1742 -1478.8786 -1478.8786 300.7239 300.7239 207835.02 207835.02 -15.733749 -15.733749 Loop time of 36.6937 on 1 procs for 1000 steps with 2000 atoms Performance: 2.355 ns/day, 10.193 hours/ns, 27.253 timesteps/s 78.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 36.047 | 36.047 | 36.047 | 0.0 | 98.24 Neigh | 0.40411 | 0.40411 | 0.40411 | 0.0 | 1.10 Comm | 0.1038 | 0.1038 | 0.1038 | 0.0 | 0.28 Output | 4.4107e-05 | 4.4107e-05 | 4.4107e-05 | 0.0 | 0.00 Modify | 0.12151 | 0.12151 | 0.12151 | 0.0 | 0.33 Other | | 0.01745 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8570 ave 8570 max 8570 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 793662 ave 793662 max 793662 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 793662 Ave neighs/atom = 396.831 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -1401.1742 -1401.1742 -1478.8786 -1478.8786 300.7239 300.7239 207835.02 207835.02 -15.733749 -15.733749 3000 -1404.569 -1404.569 -1479.1168 -1479.1168 288.50777 288.50777 207112.33 207112.33 24.431076 24.431076 Loop time of 36.0025 on 1 procs for 1000 steps with 2000 atoms Performance: 2.400 ns/day, 10.001 hours/ns, 27.776 timesteps/s 80.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 35.48 | 35.48 | 35.48 | 0.0 | 98.55 Neigh | 0.28545 | 0.28545 | 0.28545 | 0.0 | 0.79 Comm | 0.086361 | 0.086361 | 0.086361 | 0.0 | 0.24 Output | 5.6982e-05 | 5.6982e-05 | 5.6982e-05 | 0.0 | 0.00 Modify | 0.13301 | 0.13301 | 0.13301 | 0.0 | 0.37 Other | | 0.01789 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8604 ave 8604 max 8604 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 795426 ave 795426 max 795426 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 795426 Ave neighs/atom = 397.713 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -1404.569 -1404.569 -1479.1168 -1479.1168 288.50777 288.50777 207112.33 207112.33 24.431076 24.431076 4000 -1403.6931 -1403.6931 -1477.6122 -1477.6122 286.07435 286.07435 207023.72 207023.72 33.041786 33.041786 Loop time of 40.0208 on 1 procs for 1000 steps with 2000 atoms Performance: 2.159 ns/day, 11.117 hours/ns, 24.987 timesteps/s 72.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 39.435 | 39.435 | 39.435 | 0.0 | 98.54 Neigh | 0.29643 | 0.29643 | 0.29643 | 0.0 | 0.74 Comm | 0.11624 | 0.11624 | 0.11624 | 0.0 | 0.29 Output | 5.2929e-05 | 5.2929e-05 | 5.2929e-05 | 0.0 | 0.00 Modify | 0.15488 | 0.15488 | 0.15488 | 0.0 | 0.39 Other | | 0.01775 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8557 ave 8557 max 8557 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 791712 ave 791712 max 791712 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 791712 Ave neighs/atom = 395.856 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -1403.6931 -1403.6931 -1477.6122 -1477.6122 286.07435 286.07435 207023.72 207023.72 33.041786 33.041786 5000 -1406.8357 -1406.8357 -1481.1352 -1481.1352 287.54668 287.54668 208278.51 208278.51 -82.519125 -82.519125 Loop time of 42.3752 on 1 procs for 1000 steps with 2000 atoms Performance: 2.039 ns/day, 11.771 hours/ns, 23.599 timesteps/s 67.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 41.811 | 41.811 | 41.811 | 0.0 | 98.67 Neigh | 0.30311 | 0.30311 | 0.30311 | 0.0 | 0.72 Comm | 0.11223 | 0.11223 | 0.11223 | 0.0 | 0.26 Output | 3.0041e-05 | 3.0041e-05 | 3.0041e-05 | 0.0 | 0.00 Modify | 0.11814 | 0.11814 | 0.11814 | 0.0 | 0.28 Other | | 0.03089 | | | 0.07 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8629 ave 8629 max 8629 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 789030 ave 789030 max 789030 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 789030 Ave neighs/atom = 394.515 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 287.949651301481, Press = -82.1538470846249 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -1406.8357 -1406.8357 -1481.1352 -1481.1352 287.54668 287.54668 208278.51 208278.51 -82.519125 -82.519125 6000 -1405.7237 -1405.7237 -1479.5767 -1479.5767 285.8188 285.8188 207631.75 207631.75 -32.326429 -32.326429 Loop time of 40.3983 on 1 procs for 1000 steps with 2000 atoms Performance: 2.139 ns/day, 11.222 hours/ns, 24.754 timesteps/s 70.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 39.822 | 39.822 | 39.822 | 0.0 | 98.57 Neigh | 0.2932 | 0.2932 | 0.2932 | 0.0 | 0.73 Comm | 0.099127 | 0.099127 | 0.099127 | 0.0 | 0.25 Output | 3.8862e-05 | 3.8862e-05 | 3.8862e-05 | 0.0 | 0.00 Modify | 0.16637 | 0.16637 | 0.16637 | 0.0 | 0.41 Other | | 0.01764 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8651 ave 8651 max 8651 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 795260 ave 795260 max 795260 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 795260 Ave neighs/atom = 397.63 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.775519388065, Press = -2.53443724642662 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -1405.7237 -1405.7237 -1479.5767 -1479.5767 285.8188 285.8188 207631.75 207631.75 -32.326429 -32.326429 7000 -1404.9505 -1404.9505 -1479.4092 -1479.4092 288.16285 288.16285 207050.31 207050.31 18.8489 18.8489 Loop time of 38.467 on 1 procs for 1000 steps with 2000 atoms Performance: 2.246 ns/day, 10.685 hours/ns, 25.996 timesteps/s 73.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.941 | 37.941 | 37.941 | 0.0 | 98.63 Neigh | 0.29916 | 0.29916 | 0.29916 | 0.0 | 0.78 Comm | 0.073513 | 0.073513 | 0.073513 | 0.0 | 0.19 Output | 2.9087e-05 | 2.9087e-05 | 2.9087e-05 | 0.0 | 0.00 Modify | 0.12314 | 0.12314 | 0.12314 | 0.0 | 0.32 Other | | 0.03062 | | | 0.08 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8679 ave 8679 max 8679 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 794996 ave 794996 max 794996 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 794996 Ave neighs/atom = 397.498 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.947424036266, Press = -1.9332242343318 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -1404.9505 -1404.9505 -1479.4092 -1479.4092 288.16285 288.16285 207050.31 207050.31 18.8489 18.8489 8000 -1402.1373 -1402.1373 -1478.727 -1478.727 296.41009 296.41009 207264.81 207264.81 18.441871 18.441871 Loop time of 39.8973 on 1 procs for 1000 steps with 2000 atoms Performance: 2.166 ns/day, 11.083 hours/ns, 25.064 timesteps/s 72.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 39.345 | 39.345 | 39.345 | 0.0 | 98.62 Neigh | 0.29894 | 0.29894 | 0.29894 | 0.0 | 0.75 Comm | 0.074487 | 0.074487 | 0.074487 | 0.0 | 0.19 Output | 4.3154e-05 | 4.3154e-05 | 4.3154e-05 | 0.0 | 0.00 Modify | 0.16127 | 0.16127 | 0.16127 | 0.0 | 0.40 Other | | 0.0177 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8636 ave 8636 max 8636 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 794162 ave 794162 max 794162 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 794162 Ave neighs/atom = 397.081 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.115495007452, Press = -1.68916776969117 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -1402.1373 -1402.1373 -1478.727 -1478.727 296.41009 296.41009 207264.81 207264.81 18.441871 18.441871 9000 -1401.7346 -1401.7346 -1477.3046 -1477.3046 292.464 292.464 207831.47 207831.47 -16.937631 -16.937631 Loop time of 38.1344 on 1 procs for 1000 steps with 2000 atoms Performance: 2.266 ns/day, 10.593 hours/ns, 26.223 timesteps/s 76.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.564 | 37.564 | 37.564 | 0.0 | 98.50 Neigh | 0.29156 | 0.29156 | 0.29156 | 0.0 | 0.76 Comm | 0.097718 | 0.097718 | 0.097718 | 0.0 | 0.26 Output | 3.8862e-05 | 3.8862e-05 | 3.8862e-05 | 0.0 | 0.00 Modify | 0.16276 | 0.16276 | 0.16276 | 0.0 | 0.43 Other | | 0.0181 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8629 ave 8629 max 8629 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 793090 ave 793090 max 793090 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 793090 Ave neighs/atom = 396.545 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.435290861106, Press = -0.409213981851534 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -1401.7346 -1401.7346 -1477.3046 -1477.3046 292.464 292.464 207831.47 207831.47 -16.937631 -16.937631 10000 -1402.4881 -1402.4881 -1476.3502 -1476.3502 285.85396 285.85396 205998.59 205998.59 115.46115 115.46115 Loop time of 39.0759 on 1 procs for 1000 steps with 2000 atoms Performance: 2.211 ns/day, 10.854 hours/ns, 25.591 timesteps/s 73.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.479 | 38.479 | 38.479 | 0.0 | 98.47 Neigh | 0.31666 | 0.31666 | 0.31666 | 0.0 | 0.81 Comm | 0.099725 | 0.099725 | 0.099725 | 0.0 | 0.26 Output | 5.4836e-05 | 5.4836e-05 | 5.4836e-05 | 0.0 | 0.00 Modify | 0.1622 | 0.1622 | 0.1622 | 0.0 | 0.42 Other | | 0.01778 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8612 ave 8612 max 8612 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 799900 ave 799900 max 799900 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 799900 Ave neighs/atom = 399.95 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.221013009965, Press = -0.49809447579275 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -1402.4881 -1402.4881 -1476.3502 -1476.3502 285.85396 285.85396 205998.59 205998.59 115.46115 115.46115 11000 -1399.6304 -1399.6304 -1476.9218 -1476.9218 299.12571 299.12571 208172.06 208172.06 -31.540043 -31.540043 Loop time of 37.1555 on 1 procs for 1000 steps with 2000 atoms Performance: 2.325 ns/day, 10.321 hours/ns, 26.914 timesteps/s 78.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 36.554 | 36.554 | 36.554 | 0.0 | 98.38 Neigh | 0.33351 | 0.33351 | 0.33351 | 0.0 | 0.90 Comm | 0.082115 | 0.082115 | 0.082115 | 0.0 | 0.22 Output | 3.9101e-05 | 3.9101e-05 | 3.9101e-05 | 0.0 | 0.00 Modify | 0.16826 | 0.16826 | 0.16826 | 0.0 | 0.45 Other | | 0.01802 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8624 ave 8624 max 8624 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 789326 ave 789326 max 789326 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 789326 Ave neighs/atom = 394.663 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.531857183635, Press = -1.83140074897856 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -1399.6304 -1399.6304 -1476.9218 -1476.9218 299.12571 299.12571 208172.06 208172.06 -31.540043 -31.540043 12000 -1401.3492 -1401.3492 -1477.3552 -1477.3552 294.15106 294.15106 208210.37 208210.37 -47.038867 -47.038867 Loop time of 35.6298 on 1 procs for 1000 steps with 2000 atoms Performance: 2.425 ns/day, 9.897 hours/ns, 28.066 timesteps/s 80.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 35.112 | 35.112 | 35.112 | 0.0 | 98.55 Neigh | 0.23455 | 0.23455 | 0.23455 | 0.0 | 0.66 Comm | 0.10096 | 0.10096 | 0.10096 | 0.0 | 0.28 Output | 2.9087e-05 | 2.9087e-05 | 2.9087e-05 | 0.0 | 0.00 Modify | 0.1643 | 0.1643 | 0.1643 | 0.0 | 0.46 Other | | 0.01804 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8639 ave 8639 max 8639 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 791810 ave 791810 max 791810 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 791810 Ave neighs/atom = 395.905 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.480540944564, Press = -0.373315296465495 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -1401.3492 -1401.3492 -1477.3552 -1477.3552 294.15106 294.15106 208210.37 208210.37 -47.038867 -47.038867 13000 -1403.6191 -1403.6191 -1479.3266 -1479.3266 292.99608 292.99608 206788.09 206788.09 41.971003 41.971003 Loop time of 47.881 on 1 procs for 1000 steps with 2000 atoms Performance: 1.804 ns/day, 13.300 hours/ns, 20.885 timesteps/s 60.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 47.083 | 47.083 | 47.083 | 0.0 | 98.33 Neigh | 0.43907 | 0.43907 | 0.43907 | 0.0 | 0.92 Comm | 0.10143 | 0.10143 | 0.10143 | 0.0 | 0.21 Output | 2.8849e-05 | 2.8849e-05 | 2.8849e-05 | 0.0 | 0.00 Modify | 0.22501 | 0.22501 | 0.22501 | 0.0 | 0.47 Other | | 0.0328 | | | 0.07 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8654 ave 8654 max 8654 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 795258 ave 795258 max 795258 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 795258 Ave neighs/atom = 397.629 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.605363278225, Press = -1.19298425946466 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -1403.6191 -1403.6191 -1479.3266 -1479.3266 292.99608 292.99608 206788.09 206788.09 41.971003 41.971003 14000 -1404.3378 -1404.3378 -1478.7479 -1478.7479 287.97492 287.97492 207783 207783 -31.488148 -31.488148 Loop time of 37.7011 on 1 procs for 1000 steps with 2000 atoms Performance: 2.292 ns/day, 10.473 hours/ns, 26.524 timesteps/s 76.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.145 | 37.145 | 37.145 | 0.0 | 98.53 Neigh | 0.27039 | 0.27039 | 0.27039 | 0.0 | 0.72 Comm | 0.1001 | 0.1001 | 0.1001 | 0.0 | 0.27 Output | 3.9816e-05 | 3.9816e-05 | 3.9816e-05 | 0.0 | 0.00 Modify | 0.16768 | 0.16768 | 0.16768 | 0.0 | 0.44 Other | | 0.01775 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8661 ave 8661 max 8661 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 790156 ave 790156 max 790156 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 790156 Ave neighs/atom = 395.078 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.597238635327, Press = -1.02942103655077 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -1404.3378 -1404.3378 -1478.7479 -1478.7479 287.97492 287.97492 207783 207783 -31.488148 -31.488148 15000 -1403.6691 -1403.6691 -1479.1787 -1479.1787 292.22975 292.22975 207792.73 207792.73 -32.589211 -32.589211 Loop time of 35.7104 on 1 procs for 1000 steps with 2000 atoms Performance: 2.419 ns/day, 9.920 hours/ns, 28.003 timesteps/s 81.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 35.17 | 35.17 | 35.17 | 0.0 | 98.49 Neigh | 0.25145 | 0.25145 | 0.25145 | 0.0 | 0.70 Comm | 0.13106 | 0.13106 | 0.13106 | 0.0 | 0.37 Output | 4.1008e-05 | 4.1008e-05 | 4.1008e-05 | 0.0 | 0.00 Modify | 0.14005 | 0.14005 | 0.14005 | 0.0 | 0.39 Other | | 0.01789 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8656 ave 8656 max 8656 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 790950 ave 790950 max 790950 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 790950 Ave neighs/atom = 395.475 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.676973089588, Press = -0.946454134326914 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -1403.6691 -1403.6691 -1479.1787 -1479.1787 292.22975 292.22975 207792.73 207792.73 -32.589211 -32.589211 16000 -1405.2671 -1405.2671 -1479.2525 -1479.2525 286.3313 286.3313 207972.52 207972.52 -52.728092 -52.728092 Loop time of 37.4351 on 1 procs for 1000 steps with 2000 atoms Performance: 2.308 ns/day, 10.399 hours/ns, 26.713 timesteps/s 78.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 36.852 | 36.852 | 36.852 | 0.0 | 98.44 Neigh | 0.30383 | 0.30383 | 0.30383 | 0.0 | 0.81 Comm | 0.12237 | 0.12237 | 0.12237 | 0.0 | 0.33 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 0.13874 | 0.13874 | 0.13874 | 0.0 | 0.37 Other | | 0.01817 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8646 ave 8646 max 8646 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 790340 ave 790340 max 790340 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 790340 Ave neighs/atom = 395.17 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.610679138721, Press = -0.871630058551711 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -1405.2671 -1405.2671 -1479.2525 -1479.2525 286.3313 286.3313 207972.52 207972.52 -52.728092 -52.728092 17000 -1402.7829 -1402.7829 -1479.9723 -1479.9723 298.73087 298.73087 207315.25 207315.25 11.768837 11.768837 Loop time of 34.3402 on 1 procs for 1000 steps with 2000 atoms Performance: 2.516 ns/day, 9.539 hours/ns, 29.120 timesteps/s 84.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 33.771 | 33.771 | 33.771 | 0.0 | 98.34 Neigh | 0.33018 | 0.33018 | 0.33018 | 0.0 | 0.96 Comm | 0.074507 | 0.074507 | 0.074507 | 0.0 | 0.22 Output | 3.0041e-05 | 3.0041e-05 | 3.0041e-05 | 0.0 | 0.00 Modify | 0.14626 | 0.14626 | 0.14626 | 0.0 | 0.43 Other | | 0.01799 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8640 ave 8640 max 8640 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 793238 ave 793238 max 793238 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 793238 Ave neighs/atom = 396.619 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.485078992856, Press = 0.247913034701941 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -1402.7829 -1402.7829 -1479.9723 -1479.9723 298.73087 298.73087 207315.25 207315.25 11.768837 11.768837 18000 -1401.4092 -1401.4092 -1478.5253 -1478.5253 298.44725 298.44725 205405.52 205405.52 161.18013 161.18013 Loop time of 35.3272 on 1 procs for 1000 steps with 2000 atoms Performance: 2.446 ns/day, 9.813 hours/ns, 28.307 timesteps/s 82.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 34.783 | 34.783 | 34.783 | 0.0 | 98.46 Neigh | 0.28491 | 0.28491 | 0.28491 | 0.0 | 0.81 Comm | 0.1044 | 0.1044 | 0.1044 | 0.0 | 0.30 Output | 3.0994e-05 | 3.0994e-05 | 3.0994e-05 | 0.0 | 0.00 Modify | 0.13666 | 0.13666 | 0.13666 | 0.0 | 0.39 Other | | 0.01824 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8643 ave 8643 max 8643 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 799086 ave 799086 max 799086 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 799086 Ave neighs/atom = 399.543 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.507817357727, Press = -0.846955284195844 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -1401.4092 -1401.4092 -1478.5253 -1478.5253 298.44725 298.44725 205405.52 205405.52 161.18013 161.18013 19000 -1403.1485 -1403.1485 -1479.0696 -1479.0696 293.82278 293.82278 208235.68 208235.68 -60.428195 -60.428195 Loop time of 38.9682 on 1 procs for 1000 steps with 2000 atoms Performance: 2.217 ns/day, 10.825 hours/ns, 25.662 timesteps/s 72.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.328 | 38.328 | 38.328 | 0.0 | 98.36 Neigh | 0.33517 | 0.33517 | 0.33517 | 0.0 | 0.86 Comm | 0.098306 | 0.098306 | 0.098306 | 0.0 | 0.25 Output | 0.013063 | 0.013063 | 0.013063 | 0.0 | 0.03 Modify | 0.16266 | 0.16266 | 0.16266 | 0.0 | 0.42 Other | | 0.03077 | | | 0.08 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8616 ave 8616 max 8616 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 789408 ave 789408 max 789408 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 789408 Ave neighs/atom = 394.704 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.563282570117, Press = -0.484981543082347 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -1403.1485 -1403.1485 -1479.0696 -1479.0696 293.82278 293.82278 208235.68 208235.68 -60.428195 -60.428195 20000 -1403.7269 -1403.7269 -1480.64 -1480.64 297.66137 297.66137 206714.48 206714.48 46.666261 46.666261 Loop time of 34.2445 on 1 procs for 1000 steps with 2000 atoms Performance: 2.523 ns/day, 9.512 hours/ns, 29.202 timesteps/s 83.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 33.781 | 33.781 | 33.781 | 0.0 | 98.65 Neigh | 0.2358 | 0.2358 | 0.2358 | 0.0 | 0.69 Comm | 0.07282 | 0.07282 | 0.07282 | 0.0 | 0.21 Output | 3.0041e-05 | 3.0041e-05 | 3.0041e-05 | 0.0 | 0.00 Modify | 0.13604 | 0.13604 | 0.13604 | 0.0 | 0.40 Other | | 0.01882 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8655 ave 8655 max 8655 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 796602 ave 796602 max 796602 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 796602 Ave neighs/atom = 398.301 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.436936988528, Press = -0.107819235014854 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -1403.7269 -1403.7269 -1480.64 -1480.64 297.66137 297.66137 206714.48 206714.48 46.666261 46.666261 21000 -1400.503 -1400.503 -1478.0281 -1478.0281 300.0304 300.0304 206385.4 206385.4 91.697377 91.697377 Loop time of 29.1864 on 1 procs for 1000 steps with 2000 atoms Performance: 2.960 ns/day, 8.107 hours/ns, 34.263 timesteps/s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 28.735 | 28.735 | 28.735 | 0.0 | 98.45 Neigh | 0.23524 | 0.23524 | 0.23524 | 0.0 | 0.81 Comm | 0.074142 | 0.074142 | 0.074142 | 0.0 | 0.25 Output | 3.0994e-05 | 3.0994e-05 | 3.0994e-05 | 0.0 | 0.00 Modify | 0.12398 | 0.12398 | 0.12398 | 0.0 | 0.42 Other | | 0.018 | | | 0.06 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8670 ave 8670 max 8670 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 795336 ave 795336 max 795336 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 795336 Ave neighs/atom = 397.668 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.366366934318, Press = -0.471464423947043 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -1400.503 -1400.503 -1478.0281 -1478.0281 300.0304 300.0304 206385.4 206385.4 91.697377 91.697377 22000 -1406.905 -1406.905 -1480.6606 -1480.6606 285.44188 285.44188 207922.74 207922.74 -62.040516 -62.040516 Loop time of 34.9592 on 1 procs for 1000 steps with 2000 atoms Performance: 2.471 ns/day, 9.711 hours/ns, 28.605 timesteps/s 83.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 34.451 | 34.451 | 34.451 | 0.0 | 98.55 Neigh | 0.22627 | 0.22627 | 0.22627 | 0.0 | 0.65 Comm | 0.12663 | 0.12663 | 0.12663 | 0.0 | 0.36 Output | 3.6955e-05 | 3.6955e-05 | 3.6955e-05 | 0.0 | 0.00 Modify | 0.13735 | 0.13735 | 0.13735 | 0.0 | 0.39 Other | | 0.01812 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8603 ave 8603 max 8603 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 786288 ave 786288 max 786288 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 786288 Ave neighs/atom = 393.144 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.308973470309, Press = -0.885741813453351 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.664 | 6.664 | 6.664 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -1406.905 -1406.905 -1480.6606 -1480.6606 285.44188 285.44188 207922.74 207922.74 -62.040516 -62.040516 23000 -1400.3566 -1400.3566 -1478.4256 -1478.4256 302.13484 302.13484 207906 207906 -24.725318 -24.725318 Loop time of 29.3091 on 1 procs for 1000 steps with 2000 atoms Performance: 2.948 ns/day, 8.141 hours/ns, 34.119 timesteps/s 98.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 28.891 | 28.891 | 28.891 | 0.0 | 98.57 Neigh | 0.20152 | 0.20152 | 0.20152 | 0.0 | 0.69 Comm | 0.073755 | 0.073755 | 0.073755 | 0.0 | 0.25 Output | 4.1008e-05 | 4.1008e-05 | 4.1008e-05 | 0.0 | 0.00 Modify | 0.12388 | 0.12388 | 0.12388 | 0.0 | 0.42 Other | | 0.01852 | | | 0.06 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8649 ave 8649 max 8649 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 791726 ave 791726 max 791726 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 791726 Ave neighs/atom = 395.863 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 207448.852301545 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0