AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [2.58497986] Angstroms, c = [4.22125444] Angstroms, c/a = 1.632993 Total energy: -16.01775960909819 eV Cohesive energy: -4.004439902274547 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/6eaa358f-2d78-4eef-9e45-0af02e4a11d9-007/TE_035924073553_005-and-MO_737567242631_001-1750958118/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Fe__TE_035924073553_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/6eaa358f-2d78-4eef-9e45-0af02e4a11d9-007/TE_035924073553_005-and-MO_737567242631_001-1750958118/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Fe__TE_035924073553_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/6eaa358f-2d78-4eef-9e45-0af02e4a11d9-007/TE_035924073553_005-and-MO_737567242631_001-1750958118/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Fe__TE_035924073553_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/6eaa358f-2d78-4eef-9e45-0af02e4a11d9-007/TE_035924073553_005-and-MO_737567242631_001-1750958118/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Fe__TE_035924073553_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/6eaa358f-2d78-4eef-9e45-0af02e4a11d9-007/TE_035924073553_005-and-MO_737567242631_001-1750958118/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Fe__TE_035924073553_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/6eaa358f-2d78-4eef-9e45-0af02e4a11d9-007/TE_035924073553_005-and-MO_737567242631_001-1750958118/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Fe__TE_035924073553_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":5.94,"usertime":6.37,"systime":8.95,"memmax":130460,"memavg":0} output/kim.log: --------------- 2025-06-26:13:51:38CDT * 2 * information * 0x5636b21c9500_0x5636b1969f50 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x5636b1969f50'.2025-06-26:13:51:38CDT * 3 * information * 0x5636b21c9500_0x5636b1969f50 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-06-26:13:51:38CDT * 4 * information * 0x5636b21c9500_0x5636b1969f50 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-06-26:13:51:38CDT * 5 * information * 0x5636b08a6830_0x5636b08a77e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 2 * information * 0x5636b08a6830 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 5 * information * 0x5636b08a7940_0x5636b08a7230 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 2 * information * 0x5636b08a7940 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 5 * information * 0x5636b08c0650_0x5636b08a7890 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 2 * information * 0x5636b08c0650 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 5 * information * 0x5636b08c2c80_0x5636b08a9390 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 2 * information * 0x5636b08c2c80 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 5 * information * 0x5636b08c4ef0_0x5636b08c14a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 2 * information * 0x5636b08c4ef0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 5 * information * 0x5636b1968f50_0x5636b08c3e10 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 2 * information * 0x5636b1968f50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 5 * information * 0x5636b1d98ae0_0x5636b153a290 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 2 * information * 0x5636b1d98ae0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:38CDT * 2 * warning * 0x5636b21c9500 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-06-26:13:51:43CDT * 0 * information * 0x5636b21c9500_0x5636b1969f50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-06-26:13:51:43CDT * 0 * information * 0x5636b21c9500 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------