-------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c015 Local adapter: mlx5_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c015 Local device: mlx5_0 -------------------------------------------------------------------------- Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_002/runner", line 142, in forces = atoms.get_forces() File "/usr/local/lib/python3.8/dist-packages/ase/atoms.py", line 787, in get_forces forces = self._calc.get_forces(self) File "/usr/local/lib/python3.8/dist-packages/ase/calculators/abc.py", line 30, in get_forces return self.get_property('forces', atoms) File "/usr/local/lib/python3.8/dist-packages/ase/calculators/calculator.py", line 502, in get_property self.calculate(atoms, [name], system_changes) File "/usr/local/lib/python3.8/dist-packages/ase/calculators/lammpslib.py", line 357, in calculate self.propagate(atoms, properties, system_changes, 0) File "/usr/local/lib/python3.8/dist-packages/ase/calculators/lammpslib.py", line 463, in propagate self.lmp.command('run %d' % n_steps) File "/usr/local/lib/python3.8/dist-packages/lammps/core.py", line 618, in command self.lib.lammps_command(self.lmp,cmd) File "/usr/local/lib/python3.8/dist-packages/lammps/core.py", line 49, in __exit__ raise self.lmp._lammps_exception Exception: ERROR on proc 0: step0: ran out of space on far_nbrs: top=10710, max=10000 (src/REAXFF/reaxff_alloc free(): invalid pointer [c015:3748254] *** Process received signal *** [c015:3748254] Signal: Aborted (6) [c015:3748254] Signal code: (-6) [c015:3748254] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7fd86019b090] [c015:3748254] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fd86019b00b] [c015:3748254] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fd86017a859] [c015:3748254] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7fd8601e526e] [c015:3748254] [ 4] /lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7fd8601ed2fc] [c015:3748254] [ 5] /lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7fd8601eeb2c] [c015:3748254] [ 6] /usr/local/lib/python3.8/dist-packages/lammps/liblammps.so(_ZN6ReaxFF11Delete_ListEPNS_9reax_listE+0x5a)[0x7fd76296d22a] [c015:3748254] [ 7] /usr/local/lib/python3.8/dist-packages/lammps/liblammps.so(_ZN9LAMMPS_NS10PairReaxFFD1Ev+0x13b)[0x7fd76295ee6b] [c015:3748254] [ 8] /usr/local/lib/python3.8/dist-packages/lammps/liblammps.so(_ZN9LAMMPS_NS10PairReaxFFD0Ev+0xd)[0x7fd76295f16d] [c015:3748254] [ 9] /usr/local/lib/python3.8/dist-packages/lammps/liblammps.so(_ZN9LAMMPS_NS5ForceD1Ev+0xa8)[0x7fd7623c4db8] [c015:3748254] [10] /usr/local/lib/python3.8/dist-packages/lammps/liblammps.so(_ZN9LAMMPS_NS5ForceD0Ev+0xd)[0x7fd7623c50bd] [c015:3748254] [11] /usr/local/lib/python3.8/dist-packages/lammps/liblammps.so(_ZN9LAMMPS_NS6LAMMPS7destroyEv+0x45)[0x7fd762426285] [c015:3748254] [12] /usr/local/lib/python3.8/dist-packages/lammps/liblammps.so(_ZN9LAMMPS_NS6LAMMPSD1Ev+0x48)[0x7fd762428d98] [c015:3748254] [13] /usr/local/lib/python3.8/dist-packages/lammps/liblammps.so(lammps_close+0x12)[0x7fd7624554b2] [c015:3748254] [14] /lib/x86_64-linux-gnu/libffi.so.7(+0x6ff5)[0x7fd7be6c0ff5] [c015:3748254] [15] /lib/x86_64-linux-gnu/libffi.so.7(+0x640a)[0x7fd7be6c040a] [c015:3748254] [16] /usr/lib/python3.8/lib-dynload/_ctypes.cpython-38-x86_64-linux-gnu.so(_ctypes_callproc+0x5b6)[0x7fd85ee01306] [c015:3748254] [17] /usr/lib/python3.8/lib-dynload/_ctypes.cpython-38-x86_64-linux-gnu.so(+0x13ae7)[0x7fd85ee01ae7] [c015:3748254] [18] python3(_PyObject_MakeTpCall+0x296)[0x5d6066] [c015:3748254] [19] python3(_PyEval_EvalFrameDefault+0x6329)[0x54ce69] [c015:3748254] [20] python3(_PyFunction_Vectorcall+0x1b6)[0x5d5846] [c015:3748254] [21] python3(_PyEval_EvalFrameDefault+0x907)[0x547447] [c015:3748254] [22] python3(_PyFunction_Vectorcall+0x1b6)[0x5d5846] [c015:3748254] [23] python3[0x584931] [c015:3748254] [24] python3[0x6994cb] [c015:3748254] [25] python3[0x4c5b70] [c015:3748254] [26] python3(_PyGC_CollectNoFail+0x2f)[0x66721f] [c015:3748254] [27] python3(PyImport_Cleanup+0x244)[0x67a634] [c015:3748254] [28] python3(Py_FinalizeEx+0x7f)[0x67423f] [c015:3748254] [29] python3(Py_RunMain+0x32d)[0x6b418d] [c015:3748254] *** End of error message *** Aborted (core dumped) Command exited with non-zero status 134 {"realtime":4.33,"usertime":5.82,"systime":21.47,"memmax":143004,"memavg":0}