# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.9497474655508995*${_u_distance} variable latticeconst_converted equal 4.9497474655508995*1 lattice fcc ${latticeconst_converted} lattice fcc 4.9497474655509 Lattice spacing in x,y,z = 4.9497475 4.9497475 4.9497475 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (49.497475 49.497475 49.497475) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (49.497475 49.497475 49.497475) create_atoms CPU = 0.001 seconds variable mass_converted equal 207.2*${_u_mass} variable mass_converted equal 207.2*1 kim_interactions Pb WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Pb #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_LeeShimBaskes_2003_Pb__MO_019208265157_000 pair_coeff * * Pb #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 207.2 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 121268.812771005 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 121268.812771005*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 121268.812771005 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 313.15*${_u_temperature} variable temp_converted equal 313.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 313.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "313.15 - 0.2" variable T_up equal "313.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_019208265157_000#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -7998.1292 -7998.1292 -8160 -8160 313.15 313.15 121268.81 121268.81 1425.7345 1425.7345 1000 -7810.8199 -7810.8199 -7982.425 -7982.425 331.98175 331.98175 124574.13 124574.13 284.04577 284.04577 Loop time of 106.208 on 1 procs for 1000 steps with 4000 atoms Performance: 0.813 ns/day, 29.502 hours/ns, 9.415 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.75 | 105.75 | 105.75 | 0.0 | 99.56 Neigh | 0.057206 | 0.057206 | 0.057206 | 0.0 | 0.05 Comm | 0.050382 | 0.050382 | 0.050382 | 0.0 | 0.05 Output | 0.00031074 | 0.00031074 | 0.00031074 | 0.0 | 0.00 Modify | 0.30627 | 0.30627 | 0.30627 | 0.0 | 0.29 Other | | 0.048 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4964.00 ave 4964 max 4964 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218876.0 ave 218876 max 218876 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218876 Ave neighs/atom = 54.719000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -7810.8199 -7810.8199 -7982.425 -7982.425 331.98175 331.98175 124574.13 124574.13 284.04577 284.04577 2000 -7825.5097 -7825.5097 -7986.9647 -7986.9647 312.34556 312.34556 124655.27 124655.27 -253.88873 -253.88873 Loop time of 103.867 on 1 procs for 1000 steps with 4000 atoms Performance: 0.832 ns/day, 28.852 hours/ns, 9.628 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.42 | 103.42 | 103.42 | 0.0 | 99.57 Neigh | 0.057137 | 0.057137 | 0.057137 | 0.0 | 0.06 Comm | 0.046468 | 0.046468 | 0.046468 | 0.0 | 0.04 Output | 0.00015177 | 0.00015177 | 0.00015177 | 0.0 | 0.00 Modify | 0.29702 | 0.29702 | 0.29702 | 0.0 | 0.29 Other | | 0.04488 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4842.00 ave 4842 max 4842 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218274.0 ave 218274 max 218274 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218274 Ave neighs/atom = 54.568500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -7825.5097 -7825.5097 -7986.9647 -7986.9647 312.34556 312.34556 124655.27 124655.27 -253.88873 -253.88873 3000 -7820.9589 -7820.9589 -7983.2474 -7983.2474 313.95802 313.95802 124679.62 124679.62 -46.804273 -46.804273 Loop time of 103.904 on 1 procs for 1000 steps with 4000 atoms Performance: 0.832 ns/day, 28.862 hours/ns, 9.624 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.46 | 103.46 | 103.46 | 0.0 | 99.58 Neigh | 0.05702 | 0.05702 | 0.05702 | 0.0 | 0.05 Comm | 0.046081 | 0.046081 | 0.046081 | 0.0 | 0.04 Output | 0.00013145 | 0.00013145 | 0.00013145 | 0.0 | 0.00 Modify | 0.29421 | 0.29421 | 0.29421 | 0.0 | 0.28 Other | | 0.04292 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4831.00 ave 4831 max 4831 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218102.0 ave 218102 max 218102 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218102 Ave neighs/atom = 54.525500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -7820.9589 -7820.9589 -7983.2474 -7983.2474 313.95802 313.95802 124679.62 124679.62 -46.804273 -46.804273 4000 -7827.53 -7827.53 -7986.7672 -7986.7672 308.05505 308.05505 124578.87 124578.87 92.801544 92.801544 Loop time of 104.106 on 1 procs for 1000 steps with 4000 atoms Performance: 0.830 ns/day, 28.918 hours/ns, 9.606 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.66 | 103.66 | 103.66 | 0.0 | 99.57 Neigh | 0.056864 | 0.056864 | 0.056864 | 0.0 | 0.05 Comm | 0.046489 | 0.046489 | 0.046489 | 0.0 | 0.04 Output | 0.00012736 | 0.00012736 | 0.00012736 | 0.0 | 0.00 Modify | 0.29606 | 0.29606 | 0.29606 | 0.0 | 0.28 Other | | 0.04325 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4857.00 ave 4857 max 4857 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218244.0 ave 218244 max 218244 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218244 Ave neighs/atom = 54.561000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -7827.53 -7827.53 -7986.7672 -7986.7672 308.05505 308.05505 124578.87 124578.87 92.801544 92.801544 5000 -7820.5865 -7820.5865 -7986.9578 -7986.9578 321.85657 321.85657 124525.2 124525.2 328.51406 328.51406 Loop time of 103.603 on 1 procs for 1000 steps with 4000 atoms Performance: 0.834 ns/day, 28.779 hours/ns, 9.652 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.16 | 103.16 | 103.16 | 0.0 | 99.57 Neigh | 0.056785 | 0.056785 | 0.056785 | 0.0 | 0.05 Comm | 0.045574 | 0.045574 | 0.045574 | 0.0 | 0.04 Output | 0.00010307 | 0.00010307 | 0.00010307 | 0.0 | 0.00 Modify | 0.2965 | 0.2965 | 0.2965 | 0.0 | 0.29 Other | | 0.04331 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4768.00 ave 4768 max 4768 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218144.0 ave 218144 max 218144 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218144 Ave neighs/atom = 54.536000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 320.132398033597, Press = 135.936852028747 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -7820.5865 -7820.5865 -7986.9578 -7986.9578 321.85657 321.85657 124525.2 124525.2 328.51406 328.51406 6000 -7831.3694 -7831.3694 -7993.5584 -7993.5584 313.76556 313.76556 124500.58 124500.58 -50.836977 -50.836977 Loop time of 104.266 on 1 procs for 1000 steps with 4000 atoms Performance: 0.829 ns/day, 28.963 hours/ns, 9.591 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.81 | 103.81 | 103.81 | 0.0 | 99.56 Neigh | 0.056993 | 0.056993 | 0.056993 | 0.0 | 0.05 Comm | 0.046777 | 0.046777 | 0.046777 | 0.0 | 0.04 Output | 0.00010256 | 0.00010256 | 0.00010256 | 0.0 | 0.00 Modify | 0.30854 | 0.30854 | 0.30854 | 0.0 | 0.30 Other | | 0.04525 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4865.00 ave 4865 max 4865 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217986.0 ave 217986 max 217986 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217986 Ave neighs/atom = 54.496500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.849902736784, Press = 9.39010474020995 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -7831.3694 -7831.3694 -7993.5584 -7993.5584 313.76556 313.76556 124500.58 124500.58 -50.836977 -50.836977 7000 -7829.6005 -7829.6005 -7990.8683 -7990.8683 311.98337 311.98337 124573.52 124573.52 -192.29302 -192.29302 Loop time of 104.097 on 1 procs for 1000 steps with 4000 atoms Performance: 0.830 ns/day, 28.916 hours/ns, 9.606 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.61 | 103.61 | 103.61 | 0.0 | 99.53 Neigh | 0.077036 | 0.077036 | 0.077036 | 0.0 | 0.07 Comm | 0.047862 | 0.047862 | 0.047862 | 0.0 | 0.05 Output | 9.9667e-05 | 9.9667e-05 | 9.9667e-05 | 0.0 | 0.00 Modify | 0.3126 | 0.3126 | 0.3126 | 0.0 | 0.30 Other | | 0.04756 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4762.00 ave 4762 max 4762 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218280.0 ave 218280 max 218280 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218280 Ave neighs/atom = 54.570000 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.317146123319, Press = 4.21507154968553 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -7829.6005 -7829.6005 -7990.8683 -7990.8683 311.98337 311.98337 124573.52 124573.52 -192.29302 -192.29302 8000 -7828.6996 -7828.6996 -7992.4525 -7992.4525 316.7911 316.7911 124538.61 124538.61 -148.06983 -148.06983 Loop time of 103.68 on 1 procs for 1000 steps with 4000 atoms Performance: 0.833 ns/day, 28.800 hours/ns, 9.645 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.22 | 103.22 | 103.22 | 0.0 | 99.56 Neigh | 0.056585 | 0.056585 | 0.056585 | 0.0 | 0.05 Comm | 0.046739 | 0.046739 | 0.046739 | 0.0 | 0.05 Output | 0.00010192 | 0.00010192 | 0.00010192 | 0.0 | 0.00 Modify | 0.30773 | 0.30773 | 0.30773 | 0.0 | 0.30 Other | | 0.04488 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4861.00 ave 4861 max 4861 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218016.0 ave 218016 max 218016 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218016 Ave neighs/atom = 54.504000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.333464153478, Press = 8.95925059905396 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -7828.6996 -7828.6996 -7992.4525 -7992.4525 316.7911 316.7911 124538.61 124538.61 -148.06983 -148.06983 9000 -7832.1383 -7832.1383 -7995.2945 -7995.2945 315.63684 315.63684 124608.66 124608.66 -548.05902 -548.05902 Loop time of 103.748 on 1 procs for 1000 steps with 4000 atoms Performance: 0.833 ns/day, 28.819 hours/ns, 9.639 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.29 | 103.29 | 103.29 | 0.0 | 99.56 Neigh | 0.056945 | 0.056945 | 0.056945 | 0.0 | 0.05 Comm | 0.04631 | 0.04631 | 0.04631 | 0.0 | 0.04 Output | 0.00010143 | 0.00010143 | 0.00010143 | 0.0 | 0.00 Modify | 0.30539 | 0.30539 | 0.30539 | 0.0 | 0.29 Other | | 0.04434 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4827.00 ave 4827 max 4827 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218126.0 ave 218126 max 218126 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218126 Ave neighs/atom = 54.531500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.259900694964, Press = 3.23363497539981 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -7832.1383 -7832.1383 -7995.2945 -7995.2945 315.63684 315.63684 124608.66 124608.66 -548.05902 -548.05902 10000 -7826.4449 -7826.4449 -7989.8366 -7989.8366 316.09231 316.09231 124700.74 124700.74 -573.19733 -573.19733 Loop time of 103.398 on 1 procs for 1000 steps with 4000 atoms Performance: 0.836 ns/day, 28.722 hours/ns, 9.671 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 102.94 | 102.94 | 102.94 | 0.0 | 99.55 Neigh | 0.057391 | 0.057391 | 0.057391 | 0.0 | 0.06 Comm | 0.045873 | 0.045873 | 0.045873 | 0.0 | 0.04 Output | 0.00010116 | 0.00010116 | 0.00010116 | 0.0 | 0.00 Modify | 0.31049 | 0.31049 | 0.31049 | 0.0 | 0.30 Other | | 0.04739 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4881.00 ave 4881 max 4881 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217990.0 ave 217990 max 217990 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217990 Ave neighs/atom = 54.497500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.318096927139, Press = 0.545886149589785 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -7826.4449 -7826.4449 -7989.8366 -7989.8366 316.09231 316.09231 124700.74 124700.74 -573.19733 -573.19733 11000 -7828.5363 -7828.5363 -7994.3567 -7994.3567 320.79086 320.79086 124400.08 124400.08 238.983 238.983 Loop time of 103.239 on 1 procs for 1000 steps with 4000 atoms Performance: 0.837 ns/day, 28.677 hours/ns, 9.686 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 102.77 | 102.77 | 102.77 | 0.0 | 99.54 Neigh | 0.075281 | 0.075281 | 0.075281 | 0.0 | 0.07 Comm | 0.046152 | 0.046152 | 0.046152 | 0.0 | 0.04 Output | 0.00023205 | 0.00023205 | 0.00023205 | 0.0 | 0.00 Modify | 0.30625 | 0.30625 | 0.30625 | 0.0 | 0.30 Other | | 0.04532 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4845.00 ave 4845 max 4845 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217960.0 ave 217960 max 217960 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217960 Ave neighs/atom = 54.490000 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.665149062455, Press = -0.464291435760225 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -7828.5363 -7828.5363 -7994.3567 -7994.3567 320.79086 320.79086 124400.08 124400.08 238.983 238.983 12000 -7831.3215 -7831.3215 -7990.4136 -7990.4136 307.77435 307.77435 124426.53 124426.53 400.27693 400.27693 Loop time of 103.295 on 1 procs for 1000 steps with 4000 atoms Performance: 0.836 ns/day, 28.693 hours/ns, 9.681 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 102.82 | 102.82 | 102.82 | 0.0 | 99.54 Neigh | 0.075471 | 0.075471 | 0.075471 | 0.0 | 0.07 Comm | 0.045546 | 0.045546 | 0.045546 | 0.0 | 0.04 Output | 0.00010068 | 0.00010068 | 0.00010068 | 0.0 | 0.00 Modify | 0.30649 | 0.30649 | 0.30649 | 0.0 | 0.30 Other | | 0.0452 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4815.00 ave 4815 max 4815 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218074.0 ave 218074 max 218074 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218074 Ave neighs/atom = 54.518500 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.584465691251, Press = -0.282039363361429 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -7831.3215 -7831.3215 -7990.4136 -7990.4136 307.77435 307.77435 124426.53 124426.53 400.27693 400.27693 13000 -7828.1422 -7828.1422 -7988.009 -7988.009 309.27324 309.27324 124431.47 124431.47 524.61602 524.61602 Loop time of 103.391 on 1 procs for 1000 steps with 4000 atoms Performance: 0.836 ns/day, 28.720 hours/ns, 9.672 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 102.93 | 102.93 | 102.93 | 0.0 | 99.55 Neigh | 0.056276 | 0.056276 | 0.056276 | 0.0 | 0.05 Comm | 0.046694 | 0.046694 | 0.046694 | 0.0 | 0.05 Output | 0.00025286 | 0.00025286 | 0.00025286 | 0.0 | 0.00 Modify | 0.30982 | 0.30982 | 0.30982 | 0.0 | 0.30 Other | | 0.04747 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4875.00 ave 4875 max 4875 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218070.0 ave 218070 max 218070 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218070 Ave neighs/atom = 54.517500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.626689464191, Press = 2.25993061000753 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -7828.1422 -7828.1422 -7988.009 -7988.009 309.27324 309.27324 124431.47 124431.47 524.61602 524.61602 14000 -7826.4044 -7826.4044 -7990.9215 -7990.9215 318.26955 318.26955 124438.71 124438.71 370.81789 370.81789 Loop time of 102.467 on 1 procs for 1000 steps with 4000 atoms Performance: 0.843 ns/day, 28.463 hours/ns, 9.759 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 102.02 | 102.02 | 102.02 | 0.0 | 99.56 Neigh | 0.056197 | 0.056197 | 0.056197 | 0.0 | 0.05 Comm | 0.045512 | 0.045512 | 0.045512 | 0.0 | 0.04 Output | 0.00012869 | 0.00012869 | 0.00012869 | 0.0 | 0.00 Modify | 0.30492 | 0.30492 | 0.30492 | 0.0 | 0.30 Other | | 0.045 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4849.00 ave 4849 max 4849 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218222.0 ave 218222 max 218222 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218222 Ave neighs/atom = 54.555500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.510516589496, Press = 3.72287689263203 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -7826.4044 -7826.4044 -7990.9215 -7990.9215 318.26955 318.26955 124438.71 124438.71 370.81789 370.81789 15000 -7831.029 -7831.029 -7992.2317 -7992.2317 311.85753 311.85753 124517.91 124517.91 -44.349311 -44.349311 Loop time of 101.622 on 1 procs for 1000 steps with 4000 atoms Performance: 0.850 ns/day, 28.228 hours/ns, 9.840 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 101.16 | 101.16 | 101.16 | 0.0 | 99.55 Neigh | 0.073872 | 0.073872 | 0.073872 | 0.0 | 0.07 Comm | 0.0445 | 0.0445 | 0.0445 | 0.0 | 0.04 Output | 0.00019312 | 0.00019312 | 0.00019312 | 0.0 | 0.00 Modify | 0.29844 | 0.29844 | 0.29844 | 0.0 | 0.29 Other | | 0.04161 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4925.00 ave 4925 max 4925 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218146.0 ave 218146 max 218146 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218146 Ave neighs/atom = 54.536500 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.558873607015, Press = 2.70423915420425 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -7831.029 -7831.029 -7992.2317 -7992.2317 311.85753 311.85753 124517.91 124517.91 -44.349311 -44.349311 16000 -7831.0432 -7831.0432 -7991.6658 -7991.6658 310.73532 310.73532 124578.18 124578.18 -235.18963 -235.18963 Loop time of 101.129 on 1 procs for 1000 steps with 4000 atoms Performance: 0.854 ns/day, 28.091 hours/ns, 9.888 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 100.69 | 100.69 | 100.69 | 0.0 | 99.57 Neigh | 0.055303 | 0.055303 | 0.055303 | 0.0 | 0.05 Comm | 0.044377 | 0.044377 | 0.044377 | 0.0 | 0.04 Output | 9.7526e-05 | 9.7526e-05 | 9.7526e-05 | 0.0 | 0.00 Modify | 0.2938 | 0.2938 | 0.2938 | 0.0 | 0.29 Other | | 0.04042 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4812.00 ave 4812 max 4812 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218082.0 ave 218082 max 218082 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218082 Ave neighs/atom = 54.520500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.503131978811, Press = -0.0722027766762552 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -7831.0432 -7831.0432 -7991.6658 -7991.6658 310.73532 310.73532 124578.18 124578.18 -235.18963 -235.18963 17000 -7831.5496 -7831.5496 -7992.8748 -7992.8748 312.09464 312.09464 124603.33 124603.33 -439.04135 -439.04135 Loop time of 101.208 on 1 procs for 1000 steps with 4000 atoms Performance: 0.854 ns/day, 28.113 hours/ns, 9.881 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 100.77 | 100.77 | 100.77 | 0.0 | 99.57 Neigh | 0.055712 | 0.055712 | 0.055712 | 0.0 | 0.06 Comm | 0.043718 | 0.043718 | 0.043718 | 0.0 | 0.04 Output | 0.00010212 | 0.00010212 | 0.00010212 | 0.0 | 0.00 Modify | 0.29509 | 0.29509 | 0.29509 | 0.0 | 0.29 Other | | 0.04052 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4818.00 ave 4818 max 4818 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218082.0 ave 218082 max 218082 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218082 Ave neighs/atom = 54.520500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.441647750824, Press = 0.862796499123469 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -7831.5496 -7831.5496 -7992.8748 -7992.8748 312.09464 312.09464 124603.33 124603.33 -439.04135 -439.04135 18000 -7828.8652 -7828.8652 -7991.2877 -7991.2877 314.21719 314.21719 124554.9 124554.9 -124.40435 -124.40435 Loop time of 101.286 on 1 procs for 1000 steps with 4000 atoms Performance: 0.853 ns/day, 28.135 hours/ns, 9.873 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 100.85 | 100.85 | 100.85 | 0.0 | 99.57 Neigh | 0.055633 | 0.055633 | 0.055633 | 0.0 | 0.05 Comm | 0.04454 | 0.04454 | 0.04454 | 0.0 | 0.04 Output | 0.00010127 | 0.00010127 | 0.00010127 | 0.0 | 0.00 Modify | 0.29435 | 0.29435 | 0.29435 | 0.0 | 0.29 Other | | 0.04016 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4867.00 ave 4867 max 4867 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218196.0 ave 218196 max 218196 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218196 Ave neighs/atom = 54.549000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.43470441549, Press = 0.636839198631866 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -7828.8652 -7828.8652 -7991.2877 -7991.2877 314.21719 314.21719 124554.9 124554.9 -124.40435 -124.40435 19000 -7829.5591 -7829.5591 -7989.1031 -7989.1031 308.64881 308.64881 124647.15 124647.15 -348.4386 -348.4386 Loop time of 101.295 on 1 procs for 1000 steps with 4000 atoms Performance: 0.853 ns/day, 28.137 hours/ns, 9.872 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 100.84 | 100.84 | 100.84 | 0.0 | 99.55 Neigh | 0.074192 | 0.074192 | 0.074192 | 0.0 | 0.07 Comm | 0.044044 | 0.044044 | 0.044044 | 0.0 | 0.04 Output | 0.00010453 | 0.00010453 | 0.00010453 | 0.0 | 0.00 Modify | 0.2941 | 0.2941 | 0.2941 | 0.0 | 0.29 Other | | 0.03987 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4752.00 ave 4752 max 4752 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218180.0 ave 218180 max 218180 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218180 Ave neighs/atom = 54.545000 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.393388082562, Press = -0.980248271926072 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -7829.5591 -7829.5591 -7989.1031 -7989.1031 308.64881 308.64881 124647.15 124647.15 -348.4386 -348.4386 20000 -7828.1421 -7828.1421 -7990.0025 -7990.0025 313.13002 313.13002 124407.44 124407.44 503.20113 503.20113 Loop time of 101.425 on 1 procs for 1000 steps with 4000 atoms Performance: 0.852 ns/day, 28.174 hours/ns, 9.860 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 100.97 | 100.97 | 100.97 | 0.0 | 99.55 Neigh | 0.073976 | 0.073976 | 0.073976 | 0.0 | 0.07 Comm | 0.044898 | 0.044898 | 0.044898 | 0.0 | 0.04 Output | 0.00010077 | 0.00010077 | 0.00010077 | 0.0 | 0.00 Modify | 0.29576 | 0.29576 | 0.29576 | 0.0 | 0.29 Other | | 0.04016 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4813.00 ave 4813 max 4813 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218160.0 ave 218160 max 218160 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218160 Ave neighs/atom = 54.540000 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.29062268774, Press = -0.852571772716012 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -7828.1421 -7828.1421 -7990.0025 -7990.0025 313.13002 313.13002 124407.44 124407.44 503.20113 503.20113 21000 -7829.9161 -7829.9161 -7990.3992 -7990.3992 310.46549 310.46549 124376.7 124376.7 558.48026 558.48026 Loop time of 100.901 on 1 procs for 1000 steps with 4000 atoms Performance: 0.856 ns/day, 28.028 hours/ns, 9.911 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 100.47 | 100.47 | 100.47 | 0.0 | 99.57 Neigh | 0.055479 | 0.055479 | 0.055479 | 0.0 | 0.05 Comm | 0.04405 | 0.04405 | 0.04405 | 0.0 | 0.04 Output | 0.00010235 | 0.00010235 | 0.00010235 | 0.0 | 0.00 Modify | 0.29397 | 0.29397 | 0.29397 | 0.0 | 0.29 Other | | 0.04015 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4784.00 ave 4784 max 4784 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218366.0 ave 218366 max 218366 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218366 Ave neighs/atom = 54.591500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T313.15.out" else "print 'not_converged' file output/vol_T313.15.out" print '${V}' file output/vol_T313.15.out 124534.933382665 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0