# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.9497474655508995*${_u_distance} variable latticeconst_converted equal 4.9497474655508995*1 lattice fcc ${latticeconst_converted} lattice fcc 4.9497474655509 Lattice spacing in x,y,z = 4.9497475 4.9497475 4.9497475 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (49.497475 49.497475 49.497475) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0 0 0) to (49.497475 49.497475 49.497475) create_atoms CPU = 0.006 seconds variable mass_converted equal 207.2*${_u_mass} variable mass_converted equal 207.2*1 kim_interactions Pb WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Pb #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_LeeShimBaskes_2003_Pb__MO_019208265157_001 pair_coeff * * Pb #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 207.2 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 121268.812771005 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 121268.812771005*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 121268.812771005 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_019208265157_001#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -8018.8057 -8018.8057 -8160 -8160 273.15 273.15 121268.81 121268.81 1243.6194 1243.6194 1000 -7857.4259 -7857.4259 -8009.3237 -8009.3237 293.85647 293.85647 123984.96 123984.96 604.058 604.058 Loop time of 263.262 on 1 procs for 1000 steps with 4000 atoms Performance: 0.328 ns/day, 73.128 hours/ns, 3.798 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 262.3 | 262.3 | 262.3 | 0.0 | 99.64 Neigh | 0.078206 | 0.078206 | 0.078206 | 0.0 | 0.03 Comm | 0.13862 | 0.13862 | 0.13862 | 0.0 | 0.05 Output | 0.00024532 | 0.00024532 | 0.00024532 | 0.0 | 0.00 Modify | 0.64785 | 0.64785 | 0.64785 | 0.0 | 0.25 Other | | 0.09555 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4954 ave 4954 max 4954 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218042 ave 218042 max 218042 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218042 Ave neighs/atom = 54.5105 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -7857.4259 -7857.4259 -8009.3237 -8009.3237 293.85647 293.85647 123984.96 123984.96 604.058 604.058 2000 -7869.1069 -7869.1069 -8011.1391 -8011.1391 274.77097 274.77097 124209.28 124209.28 -300.50722 -300.50722 Loop time of 262.783 on 1 procs for 1000 steps with 4000 atoms Performance: 0.329 ns/day, 72.995 hours/ns, 3.805 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 261.8 | 261.8 | 261.8 | 0.0 | 99.63 Neigh | 0.1177 | 0.1177 | 0.1177 | 0.0 | 0.04 Comm | 0.12651 | 0.12651 | 0.12651 | 0.0 | 0.05 Output | 0.00024502 | 0.00024502 | 0.00024502 | 0.0 | 0.00 Modify | 0.63907 | 0.63907 | 0.63907 | 0.0 | 0.24 Other | | 0.09433 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4906 ave 4906 max 4906 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218050 ave 218050 max 218050 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218050 Ave neighs/atom = 54.5125 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -7869.1069 -7869.1069 -8011.1391 -8011.1391 274.77097 274.77097 124209.28 124209.28 -300.50722 -300.50722 3000 -7863.2568 -7863.2568 -8006.4295 -8006.4295 276.97737 276.97737 124240.43 124240.43 -39.614958 -39.614958 Loop time of 263.04 on 1 procs for 1000 steps with 4000 atoms Performance: 0.328 ns/day, 73.067 hours/ns, 3.802 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 262.06 | 262.06 | 262.06 | 0.0 | 99.63 Neigh | 0.11748 | 0.11748 | 0.11748 | 0.0 | 0.04 Comm | 0.12681 | 0.12681 | 0.12681 | 0.0 | 0.05 Output | 0.00028309 | 0.00028309 | 0.00028309 | 0.0 | 0.00 Modify | 0.64055 | 0.64055 | 0.64055 | 0.0 | 0.24 Other | | 0.0939 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4898 ave 4898 max 4898 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217986 ave 217986 max 217986 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217986 Ave neighs/atom = 54.4965 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -7863.2568 -7863.2568 -8006.4295 -8006.4295 276.97737 276.97737 124240.43 124240.43 -39.614958 -39.614958 4000 -7871.5052 -7871.5052 -8009.3376 -8009.3376 266.64607 266.64607 124248.68 124248.68 -312.75527 -312.75527 Loop time of 264.497 on 1 procs for 1000 steps with 4000 atoms Performance: 0.327 ns/day, 73.471 hours/ns, 3.781 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.51 | 263.51 | 263.51 | 0.0 | 99.63 Neigh | 0.11785 | 0.11785 | 0.11785 | 0.0 | 0.04 Comm | 0.12726 | 0.12726 | 0.12726 | 0.0 | 0.05 Output | 0.000277 | 0.000277 | 0.000277 | 0.0 | 0.00 Modify | 0.64209 | 0.64209 | 0.64209 | 0.0 | 0.24 Other | | 0.09464 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4880 ave 4880 max 4880 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217934 ave 217934 max 217934 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217934 Ave neighs/atom = 54.4835 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -7871.5052 -7871.5052 -8009.3376 -8009.3376 266.64607 266.64607 124248.68 124248.68 -312.75527 -312.75527 5000 -7865.6234 -7865.6234 -8010.5206 -8010.5206 280.31354 280.31354 124155.9 124155.9 36.119182 36.119182 Loop time of 263.539 on 1 procs for 1000 steps with 4000 atoms Performance: 0.328 ns/day, 73.205 hours/ns, 3.795 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 262.56 | 262.56 | 262.56 | 0.0 | 99.63 Neigh | 0.11768 | 0.11768 | 0.11768 | 0.0 | 0.04 Comm | 0.12662 | 0.12662 | 0.12662 | 0.0 | 0.05 Output | 0.00019847 | 0.00019847 | 0.00019847 | 0.0 | 0.00 Modify | 0.64482 | 0.64482 | 0.64482 | 0.0 | 0.24 Other | | 0.09415 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4895 ave 4895 max 4895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217894 ave 217894 max 217894 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217894 Ave neighs/atom = 54.4735 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 280.731668046225, Press = -14.3689733725352 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -7865.6234 -7865.6234 -8010.5206 -8010.5206 280.31354 280.31354 124155.9 124155.9 36.119182 36.119182 6000 -7875.5915 -7875.5915 -8015.1607 -8015.1607 270.00624 270.00624 124095.85 124095.85 -109.65175 -109.65175 Loop time of 264.868 on 1 procs for 1000 steps with 4000 atoms Performance: 0.326 ns/day, 73.574 hours/ns, 3.775 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.86 | 263.86 | 263.86 | 0.0 | 99.62 Neigh | 0.11802 | 0.11802 | 0.11802 | 0.0 | 0.04 Comm | 0.1276 | 0.1276 | 0.1276 | 0.0 | 0.05 Output | 0.00019943 | 0.00019943 | 0.00019943 | 0.0 | 0.00 Modify | 0.67126 | 0.67126 | 0.67126 | 0.0 | 0.25 Other | | 0.09449 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4951 ave 4951 max 4951 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217660 ave 217660 max 217660 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217660 Ave neighs/atom = 54.415 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.788725460803, Press = -3.99514725411503 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -7875.5915 -7875.5915 -8015.1607 -8015.1607 270.00624 270.00624 124095.85 124095.85 -109.65175 -109.65175 7000 -7872.2821 -7872.2821 -8013.6428 -8013.6428 273.47201 273.47201 124051.31 124051.31 143.12655 143.12655 Loop time of 264.27 on 1 procs for 1000 steps with 4000 atoms Performance: 0.327 ns/day, 73.408 hours/ns, 3.784 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.26 | 263.26 | 263.26 | 0.0 | 99.62 Neigh | 0.11772 | 0.11772 | 0.11772 | 0.0 | 0.04 Comm | 0.12604 | 0.12604 | 0.12604 | 0.0 | 0.05 Output | 0.00024742 | 0.00024742 | 0.00024742 | 0.0 | 0.00 Modify | 0.6691 | 0.6691 | 0.6691 | 0.0 | 0.25 Other | | 0.0942 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4834 ave 4834 max 4834 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217972 ave 217972 max 217972 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217972 Ave neighs/atom = 54.493 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.315804798468, Press = -1.10418535605307 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -7872.2821 -7872.2821 -8013.6428 -8013.6428 273.47201 273.47201 124051.31 124051.31 143.12655 143.12655 8000 -7871.8795 -7871.8795 -8011.5072 -8011.5072 270.11922 270.11922 124166.68 124166.68 -128.38285 -128.38285 Loop time of 264.102 on 1 procs for 1000 steps with 4000 atoms Performance: 0.327 ns/day, 73.362 hours/ns, 3.786 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.09 | 263.09 | 263.09 | 0.0 | 99.62 Neigh | 0.11796 | 0.11796 | 0.11796 | 0.0 | 0.04 Comm | 0.12845 | 0.12845 | 0.12845 | 0.0 | 0.05 Output | 0.00019995 | 0.00019995 | 0.00019995 | 0.0 | 0.00 Modify | 0.66905 | 0.66905 | 0.66905 | 0.0 | 0.25 Other | | 0.0947 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4901 ave 4901 max 4901 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217890 ave 217890 max 217890 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217890 Ave neighs/atom = 54.4725 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.298037755871, Press = -1.59772231622865 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -7871.8795 -7871.8795 -8011.5072 -8011.5072 270.11922 270.11922 124166.68 124166.68 -128.38285 -128.38285 9000 -7876.2358 -7876.2358 -8013.734 -8013.734 265.99963 265.99963 124093.3 124093.3 -41.787357 -41.787357 Loop time of 264.744 on 1 procs for 1000 steps with 4000 atoms Performance: 0.326 ns/day, 73.540 hours/ns, 3.777 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.74 | 263.74 | 263.74 | 0.0 | 99.62 Neigh | 0.11785 | 0.11785 | 0.11785 | 0.0 | 0.04 Comm | 0.1266 | 0.1266 | 0.1266 | 0.0 | 0.05 Output | 0.00019856 | 0.00019856 | 0.00019856 | 0.0 | 0.00 Modify | 0.66876 | 0.66876 | 0.66876 | 0.0 | 0.25 Other | | 0.09452 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4871 ave 4871 max 4871 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217806 ave 217806 max 217806 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217806 Ave neighs/atom = 54.4515 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.120578736211, Press = 4.13333705618637 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -7876.2358 -7876.2358 -8013.734 -8013.734 265.99963 265.99963 124093.3 124093.3 -41.787357 -41.787357 10000 -7871.1454 -7871.1454 -8013.4613 -8013.4613 275.31984 275.31984 124257.14 124257.14 -572.83822 -572.83822 Loop time of 264.062 on 1 procs for 1000 steps with 4000 atoms Performance: 0.327 ns/day, 73.351 hours/ns, 3.787 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.06 | 263.06 | 263.06 | 0.0 | 99.62 Neigh | 0.11757 | 0.11757 | 0.11757 | 0.0 | 0.04 Comm | 0.12581 | 0.12581 | 0.12581 | 0.0 | 0.05 Output | 0.00019654 | 0.00019654 | 0.00019654 | 0.0 | 0.00 Modify | 0.66786 | 0.66786 | 0.66786 | 0.0 | 0.25 Other | | 0.09425 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4901 ave 4901 max 4901 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218194 ave 218194 max 218194 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218194 Ave neighs/atom = 54.5485 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.395782104274, Press = -2.55675072679544 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -7871.1454 -7871.1454 -8013.4613 -8013.4613 275.31984 275.31984 124257.14 124257.14 -572.83822 -572.83822 11000 -7875.71 -7875.71 -8014.845 -8014.845 269.16617 269.16617 124023.62 124023.62 229.12092 229.12092 Loop time of 264.954 on 1 procs for 1000 steps with 4000 atoms Performance: 0.326 ns/day, 73.598 hours/ns, 3.774 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.95 | 263.95 | 263.95 | 0.0 | 99.62 Neigh | 0.11788 | 0.11788 | 0.11788 | 0.0 | 0.04 Comm | 0.12704 | 0.12704 | 0.12704 | 0.0 | 0.05 Output | 0.00024862 | 0.00024862 | 0.00024862 | 0.0 | 0.00 Modify | 0.66813 | 0.66813 | 0.66813 | 0.0 | 0.25 Other | | 0.09394 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4913 ave 4913 max 4913 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217898 ave 217898 max 217898 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217898 Ave neighs/atom = 54.4745 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.331493491596, Press = -0.486731569030667 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -7875.71 -7875.71 -8014.845 -8014.845 269.16617 269.16617 124023.62 124023.62 229.12092 229.12092 12000 -7867.7545 -7867.7545 -8011.9927 -8011.9927 279.03865 279.03865 124185.47 124185.47 -192.23715 -192.23715 Loop time of 264.157 on 1 procs for 1000 steps with 4000 atoms Performance: 0.327 ns/day, 73.377 hours/ns, 3.786 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.15 | 263.15 | 263.15 | 0.0 | 99.62 Neigh | 0.11755 | 0.11755 | 0.11755 | 0.0 | 0.04 Comm | 0.12661 | 0.12661 | 0.12661 | 0.0 | 0.05 Output | 0.00019903 | 0.00019903 | 0.00019903 | 0.0 | 0.00 Modify | 0.66872 | 0.66872 | 0.66872 | 0.0 | 0.25 Other | | 0.0939 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4900 ave 4900 max 4900 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217934 ave 217934 max 217934 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217934 Ave neighs/atom = 54.4835 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.311572886065, Press = 1.98102829466041 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -7867.7545 -7867.7545 -8011.9927 -8011.9927 279.03865 279.03865 124185.47 124185.47 -192.23715 -192.23715 13000 -7872.3377 -7872.3377 -8012.8876 -8012.8876 271.90322 271.90322 124069.04 124069.04 145.6621 145.6621 Loop time of 264.109 on 1 procs for 1000 steps with 4000 atoms Performance: 0.327 ns/day, 73.363 hours/ns, 3.786 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.06 | 263.06 | 263.06 | 0.0 | 99.60 Neigh | 0.15698 | 0.15698 | 0.15698 | 0.0 | 0.06 Comm | 0.1276 | 0.1276 | 0.1276 | 0.0 | 0.05 Output | 0.00020024 | 0.00020024 | 0.00020024 | 0.0 | 0.00 Modify | 0.66988 | 0.66988 | 0.66988 | 0.0 | 0.25 Other | | 0.09367 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4877 ave 4877 max 4877 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217736 ave 217736 max 217736 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217736 Ave neighs/atom = 54.434 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.257248934548, Press = -2.65304363708946 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -7872.3377 -7872.3377 -8012.8876 -8012.8876 271.90322 271.90322 124069.04 124069.04 145.6621 145.6621 14000 -7874.2792 -7874.2792 -8011.8514 -8011.8514 266.14271 266.14271 124032.76 124032.76 365.4255 365.4255 Loop time of 264.868 on 1 procs for 1000 steps with 4000 atoms Performance: 0.326 ns/day, 73.574 hours/ns, 3.775 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.86 | 263.86 | 263.86 | 0.0 | 99.62 Neigh | 0.11764 | 0.11764 | 0.11764 | 0.0 | 0.04 Comm | 0.12533 | 0.12533 | 0.12533 | 0.0 | 0.05 Output | 0.00019973 | 0.00019973 | 0.00019973 | 0.0 | 0.00 Modify | 0.66852 | 0.66852 | 0.66852 | 0.0 | 0.25 Other | | 0.09455 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4879 ave 4879 max 4879 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217694 ave 217694 max 217694 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217694 Ave neighs/atom = 54.4235 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.269895668318, Press = 2.39993708351361 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -7874.2792 -7874.2792 -8011.8514 -8011.8514 266.14271 266.14271 124032.76 124032.76 365.4255 365.4255 15000 -7870.4814 -7870.4814 -8012.5387 -8012.5387 274.81956 274.81956 124154.91 124154.91 -133.61692 -133.61692 Loop time of 264.612 on 1 procs for 1000 steps with 4000 atoms Performance: 0.327 ns/day, 73.503 hours/ns, 3.779 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 263.64 | 263.64 | 263.64 | 0.0 | 99.63 Neigh | 0.078674 | 0.078674 | 0.078674 | 0.0 | 0.03 Comm | 0.12688 | 0.12688 | 0.12688 | 0.0 | 0.05 Output | 0.00023969 | 0.00023969 | 0.00023969 | 0.0 | 0.00 Modify | 0.66952 | 0.66952 | 0.66952 | 0.0 | 0.25 Other | | 0.0944 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4959 ave 4959 max 4959 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217964 ave 217964 max 217964 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217964 Ave neighs/atom = 54.491 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.25868991664, Press = -0.263268665851755 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -7870.4814 -7870.4814 -8012.5387 -8012.5387 274.81956 274.81956 124154.91 124154.91 -133.61692 -133.61692 16000 -7873.4672 -7873.4672 -8014.4188 -8014.4188 272.68045 272.68045 124030.95 124030.95 200.87902 200.87902 Loop time of 265.591 on 1 procs for 1000 steps with 4000 atoms Performance: 0.325 ns/day, 73.775 hours/ns, 3.765 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 264.58 | 264.58 | 264.58 | 0.0 | 99.62 Neigh | 0.11821 | 0.11821 | 0.11821 | 0.0 | 0.04 Comm | 0.12935 | 0.12935 | 0.12935 | 0.0 | 0.05 Output | 0.0002024 | 0.0002024 | 0.0002024 | 0.0 | 0.00 Modify | 0.67001 | 0.67001 | 0.67001 | 0.0 | 0.25 Other | | 0.09081 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4858 ave 4858 max 4858 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217664 ave 217664 max 217664 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217664 Ave neighs/atom = 54.416 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.2369189778, Press = 0.57101598155444 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -7873.4672 -7873.4672 -8014.4188 -8014.4188 272.68045 272.68045 124030.95 124030.95 200.87902 200.87902 17000 -7872.9887 -7872.9887 -8015.603 -8015.603 275.89693 275.89693 124112.86 124112.86 -174.61061 -174.61061 Loop time of 265.721 on 1 procs for 1000 steps with 4000 atoms Performance: 0.325 ns/day, 73.811 hours/ns, 3.763 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 264.71 | 264.71 | 264.71 | 0.0 | 99.62 Neigh | 0.11831 | 0.11831 | 0.11831 | 0.0 | 0.04 Comm | 0.12877 | 0.12877 | 0.12877 | 0.0 | 0.05 Output | 0.00020181 | 0.00020181 | 0.00020181 | 0.0 | 0.00 Modify | 0.67056 | 0.67056 | 0.67056 | 0.0 | 0.25 Other | | 0.09078 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4945 ave 4945 max 4945 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217794 ave 217794 max 217794 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217794 Ave neighs/atom = 54.4485 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.225810699478, Press = -0.397895622712027 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -7872.9887 -7872.9887 -8015.603 -8015.603 275.89693 275.89693 124112.86 124112.86 -174.61061 -174.61061 18000 -7872.6325 -7872.6325 -8013.2347 -8013.2347 272.00444 272.00444 124007.02 124007.02 373.03737 373.03737 Loop time of 265.274 on 1 procs for 1000 steps with 4000 atoms Performance: 0.326 ns/day, 73.687 hours/ns, 3.770 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 264.26 | 264.26 | 264.26 | 0.0 | 99.62 Neigh | 0.11835 | 0.11835 | 0.11835 | 0.0 | 0.04 Comm | 0.1281 | 0.1281 | 0.1281 | 0.0 | 0.05 Output | 0.00024029 | 0.00024029 | 0.00024029 | 0.0 | 0.00 Modify | 0.67144 | 0.67144 | 0.67144 | 0.0 | 0.25 Other | | 0.09342 | | | 0.04 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4875 ave 4875 max 4875 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217888 ave 217888 max 217888 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217888 Ave neighs/atom = 54.472 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.250051833043, Press = -0.720350047741442 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -7872.6325 -7872.6325 -8013.2347 -8013.2347 272.00444 272.00444 124007.02 124007.02 373.03737 373.03737 19000 -7871.7824 -7871.7824 -8013.886 -8013.886 274.90918 274.90918 124173.29 124173.29 -302.44219 -302.44219 Loop time of 265.381 on 1 procs for 1000 steps with 4000 atoms Performance: 0.326 ns/day, 73.717 hours/ns, 3.768 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 264.37 | 264.37 | 264.37 | 0.0 | 99.62 Neigh | 0.11772 | 0.11772 | 0.11772 | 0.0 | 0.04 Comm | 0.12814 | 0.12814 | 0.12814 | 0.0 | 0.05 Output | 0.00020248 | 0.00020248 | 0.00020248 | 0.0 | 0.00 Modify | 0.66949 | 0.66949 | 0.66949 | 0.0 | 0.25 Other | | 0.09235 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4800 ave 4800 max 4800 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217654 ave 217654 max 217654 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217654 Ave neighs/atom = 54.4135 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.192547142181, Press = 1.68724226450742 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -7871.7824 -7871.7824 -8013.886 -8013.886 274.90918 274.90918 124173.29 124173.29 -302.44219 -302.44219 20000 -7870.3199 -7870.3199 -8011.6078 -8011.6078 273.33114 273.33114 124204.23 124204.23 -270.11343 -270.11343 Loop time of 301.417 on 1 procs for 1000 steps with 4000 atoms Performance: 0.287 ns/day, 83.727 hours/ns, 3.318 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 300.23 | 300.23 | 300.23 | 0.0 | 99.61 Neigh | 0.12998 | 0.12998 | 0.12998 | 0.0 | 0.04 Comm | 0.14477 | 0.14477 | 0.14477 | 0.0 | 0.05 Output | 0.00024983 | 0.00024983 | 0.00024983 | 0.0 | 0.00 Modify | 0.80988 | 0.80988 | 0.80988 | 0.0 | 0.27 Other | | 0.1024 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4954 ave 4954 max 4954 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217868 ave 217868 max 217868 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217868 Ave neighs/atom = 54.467 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.270954528867, Press = -1.5417730379495 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -7870.3199 -7870.3199 -8011.6078 -8011.6078 273.33114 273.33114 124204.23 124204.23 -270.11343 -270.11343 21000 -7875.3551 -7875.3551 -8016.9928 -8016.9928 274.0077 274.0077 123984.25 123984.25 270.54119 270.54119 Loop time of 312.202 on 1 procs for 1000 steps with 4000 atoms Performance: 0.277 ns/day, 86.723 hours/ns, 3.203 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 311.01 | 311.01 | 311.01 | 0.0 | 99.62 Neigh | 0.085944 | 0.085944 | 0.085944 | 0.0 | 0.03 Comm | 0.14726 | 0.14726 | 0.14726 | 0.0 | 0.05 Output | 0.00020022 | 0.00020022 | 0.00020022 | 0.0 | 0.00 Modify | 0.8518 | 0.8518 | 0.8518 | 0.0 | 0.27 Other | | 0.1048 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4839 ave 4839 max 4839 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217796 ave 217796 max 217796 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217796 Ave neighs/atom = 54.449 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.257706313124, Press = 0.579751654254597 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -7875.3551 -7875.3551 -8016.9928 -8016.9928 274.0077 274.0077 123984.25 123984.25 270.54119 270.54119 22000 -7873.1079 -7873.1079 -8015.2965 -8015.2965 275.07358 275.07358 124250.17 124250.17 -652.29124 -652.29124 Loop time of 313.82 on 1 procs for 1000 steps with 4000 atoms Performance: 0.275 ns/day, 87.172 hours/ns, 3.187 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 312.58 | 312.58 | 312.58 | 0.0 | 99.60 Neigh | 0.13003 | 0.13003 | 0.13003 | 0.0 | 0.04 Comm | 0.14898 | 0.14898 | 0.14898 | 0.0 | 0.05 Output | 0.00020146 | 0.00020146 | 0.00020146 | 0.0 | 0.00 Modify | 0.85696 | 0.85696 | 0.85696 | 0.0 | 0.27 Other | | 0.1049 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4885 ave 4885 max 4885 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217710 ave 217710 max 217710 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217710 Ave neighs/atom = 54.4275 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.183635249717, Press = -0.544630430799379 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -7873.1079 -7873.1079 -8015.2965 -8015.2965 275.07358 275.07358 124250.17 124250.17 -652.29124 -652.29124 23000 -7872.4429 -7872.4429 -8012.4176 -8012.4176 270.7904 270.7904 123957.62 123957.62 554.33908 554.33908 Loop time of 304.286 on 1 procs for 1000 steps with 4000 atoms Performance: 0.284 ns/day, 84.524 hours/ns, 3.286 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 303.09 | 303.09 | 303.09 | 0.0 | 99.61 Neigh | 0.12603 | 0.12603 | 0.12603 | 0.0 | 0.04 Comm | 0.14535 | 0.14535 | 0.14535 | 0.0 | 0.05 Output | 0.00019806 | 0.00019806 | 0.00019806 | 0.0 | 0.00 Modify | 0.82306 | 0.82306 | 0.82306 | 0.0 | 0.27 Other | | 0.1032 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4833 ave 4833 max 4833 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217910 ave 217910 max 217910 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217910 Ave neighs/atom = 54.4775 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 124101.990348206 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0