# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.9497474655508995*${_u_distance} variable latticeconst_converted equal 4.9497474655508995*1 lattice fcc ${latticeconst_converted} lattice fcc 4.9497474655509 Lattice spacing in x,y,z = 4.9497475 4.9497475 4.9497475 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (49.497475 49.497475 49.497475) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms create_atoms CPU = 0.007 seconds variable mass_converted equal 207.2*${_u_mass} variable mass_converted equal 207.2*1 kim_interactions Pb #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_EtesamiBaskesLaradji_2018_PbSn__MO_162736908871_000 pair_coeff * * Pb #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 207.2 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 121268.812771005 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 121268.812771005*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 121268.812771005 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 253.15*${_u_temperature} variable temp_converted equal 253.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 253.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "253.15 - 0.2" variable T_up equal "253.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -8029.1439 -8029.1439 -8160 -8160 253.15 253.15 121268.81 121268.81 1152.5618 1152.5618 1000 -7884.6562 -7884.6562 -8014.5505 -8014.5505 251.28915 251.28915 124144.23 124144.23 11.123737 11.123737 Loop time of 116.749 on 1 procs for 1000 steps with 4000 atoms Performance: 0.740 ns/day, 32.430 hours/ns, 8.565 timesteps/s 47.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 116.31 | 116.31 | 116.31 | 0.0 | 99.63 Neigh | 0.018436 | 0.018436 | 0.018436 | 0.0 | 0.02 Comm | 0.10373 | 0.10373 | 0.10373 | 0.0 | 0.09 Output | 4.41e-05 | 4.41e-05 | 4.41e-05 | 0.0 | 0.00 Modify | 0.24573 | 0.24573 | 0.24573 | 0.0 | 0.21 Other | | 0.06905 | | | 0.06 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4957.00 ave 4957 max 4957 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218050.0 ave 218050 max 218050 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218050 Ave neighs/atom = 54.512500 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -7884.6562 -7884.6562 -8014.5505 -8014.5505 251.28915 251.28915 124144.23 124144.23 11.123737 11.123737 2000 -7894.9437 -7894.9437 -8019.4855 -8019.4855 240.93443 240.93443 124132.81 124132.81 -351.69271 -351.69271 Loop time of 115.361 on 1 procs for 1000 steps with 4000 atoms Performance: 0.749 ns/day, 32.045 hours/ns, 8.668 timesteps/s 48.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 114.84 | 114.84 | 114.84 | 0.0 | 99.55 Neigh | 0.068242 | 0.068242 | 0.068242 | 0.0 | 0.06 Comm | 0.033914 | 0.033914 | 0.033914 | 0.0 | 0.03 Output | 4.05e-05 | 4.05e-05 | 4.05e-05 | 0.0 | 0.00 Modify | 0.38212 | 0.38212 | 0.38212 | 0.0 | 0.33 Other | | 0.03829 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4909.00 ave 4909 max 4909 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218188.0 ave 218188 max 218188 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218188 Ave neighs/atom = 54.547000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -7894.9437 -7894.9437 -8019.4855 -8019.4855 240.93443 240.93443 124132.81 124132.81 -351.69271 -351.69271 3000 -7890.4946 -7890.4946 -8020.4411 -8020.4411 251.39032 251.39032 123934.46 123934.46 253.91289 253.91289 Loop time of 117.443 on 1 procs for 1000 steps with 4000 atoms Performance: 0.736 ns/day, 32.623 hours/ns, 8.515 timesteps/s 48.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 117.03 | 117.03 | 117.03 | 0.0 | 99.65 Neigh | 0.077807 | 0.077807 | 0.077807 | 0.0 | 0.07 Comm | 0.084706 | 0.084706 | 0.084706 | 0.0 | 0.07 Output | 4.88e-05 | 4.88e-05 | 4.88e-05 | 0.0 | 0.00 Modify | 0.21844 | 0.21844 | 0.21844 | 0.0 | 0.19 Other | | 0.02854 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4918.00 ave 4918 max 4918 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218100.0 ave 218100 max 218100 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218100 Ave neighs/atom = 54.525000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -7890.4946 -7890.4946 -8020.4411 -8020.4411 251.39032 251.39032 123934.46 123934.46 253.91289 253.91289 4000 -7893.2255 -7893.2255 -8026.0526 -8026.0526 256.96293 256.96293 123929.59 123929.59 2.8276155 2.8276155 Loop time of 118.007 on 1 procs for 1000 steps with 4000 atoms Performance: 0.732 ns/day, 32.780 hours/ns, 8.474 timesteps/s 47.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 117.45 | 117.45 | 117.45 | 0.0 | 99.53 Neigh | 0.055539 | 0.055539 | 0.055539 | 0.0 | 0.05 Comm | 0.074051 | 0.074051 | 0.074051 | 0.0 | 0.06 Output | 4.86e-05 | 4.86e-05 | 4.86e-05 | 0.0 | 0.00 Modify | 0.3681 | 0.3681 | 0.3681 | 0.0 | 0.31 Other | | 0.05853 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4888.00 ave 4888 max 4888 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218024.0 ave 218024 max 218024 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218024 Ave neighs/atom = 54.506000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -7893.2255 -7893.2255 -8026.0526 -8026.0526 256.96293 256.96293 123929.59 123929.59 2.8276155 2.8276155 5000 -7888.4022 -7888.4022 -8019.8465 -8019.8465 254.28799 254.28799 124043.87 124043.87 18.065549 18.065549 Loop time of 117.668 on 1 procs for 1000 steps with 4000 atoms Performance: 0.734 ns/day, 32.685 hours/ns, 8.499 timesteps/s 47.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 117.22 | 117.22 | 117.22 | 0.0 | 99.62 Neigh | 0.057407 | 0.057407 | 0.057407 | 0.0 | 0.05 Comm | 0.083482 | 0.083482 | 0.083482 | 0.0 | 0.07 Output | 3.61e-05 | 3.61e-05 | 3.61e-05 | 0.0 | 0.00 Modify | 0.29047 | 0.29047 | 0.29047 | 0.0 | 0.25 Other | | 0.0184 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4903.00 ave 4903 max 4903 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217906.0 ave 217906 max 217906 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217906 Ave neighs/atom = 54.476500 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 251.66102572971, Press = -96.0473547123393 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -7888.4022 -7888.4022 -8019.8465 -8019.8465 254.28799 254.28799 124043.87 124043.87 18.065549 18.065549 6000 -7890.5596 -7890.5596 -8022.2463 -8022.2463 254.75679 254.75679 124045.49 124045.49 -126.15397 -126.15397 Loop time of 112.574 on 1 procs for 1000 steps with 4000 atoms Performance: 0.767 ns/day, 31.271 hours/ns, 8.883 timesteps/s 50.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 112.19 | 112.19 | 112.19 | 0.0 | 99.66 Neigh | 0.038221 | 0.038221 | 0.038221 | 0.0 | 0.03 Comm | 0.074235 | 0.074235 | 0.074235 | 0.0 | 0.07 Output | 3.6e-05 | 3.6e-05 | 3.6e-05 | 0.0 | 0.00 Modify | 0.23681 | 0.23681 | 0.23681 | 0.0 | 0.21 Other | | 0.03891 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4961.00 ave 4961 max 4961 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217672.0 ave 217672 max 217672 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217672 Ave neighs/atom = 54.418000 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.587757053403, Press = -11.591781297544 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -7890.5596 -7890.5596 -8022.2463 -8022.2463 254.75679 254.75679 124045.49 124045.49 -126.15397 -126.15397 7000 -7893.1782 -7893.1782 -8023.5005 -8023.5005 252.11719 252.11719 124093.09 124093.09 -429.18227 -429.18227 Loop time of 106.656 on 1 procs for 1000 steps with 4000 atoms Performance: 0.810 ns/day, 29.627 hours/ns, 9.376 timesteps/s 52.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 106.19 | 106.19 | 106.19 | 0.0 | 99.56 Neigh | 0.083723 | 0.083723 | 0.083723 | 0.0 | 0.08 Comm | 0.0532 | 0.0532 | 0.0532 | 0.0 | 0.05 Output | 3.57e-05 | 3.57e-05 | 3.57e-05 | 0.0 | 0.00 Modify | 0.29105 | 0.29105 | 0.29105 | 0.0 | 0.27 Other | | 0.03831 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4857.00 ave 4857 max 4857 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217976.0 ave 217976 max 217976 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217976 Ave neighs/atom = 54.494000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.46666811874, Press = 3.69353417979609 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -7893.1782 -7893.1782 -8023.5005 -8023.5005 252.11719 252.11719 124093.09 124093.09 -429.18227 -429.18227 8000 -7894.1739 -7894.1739 -8024.592 -8024.592 252.3026 252.3026 123751.01 123751.01 780.44388 780.44388 Loop time of 110.837 on 1 procs for 1000 steps with 4000 atoms Performance: 0.780 ns/day, 30.788 hours/ns, 9.022 timesteps/s 50.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 110.37 | 110.37 | 110.37 | 0.0 | 99.58 Neigh | 0.048627 | 0.048627 | 0.048627 | 0.0 | 0.04 Comm | 0.12554 | 0.12554 | 0.12554 | 0.0 | 0.11 Output | 3.49e-05 | 3.49e-05 | 3.49e-05 | 0.0 | 0.00 Modify | 0.25548 | 0.25548 | 0.25548 | 0.0 | 0.23 Other | | 0.03904 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4969.00 ave 4969 max 4969 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218052.0 ave 218052 max 218052 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218052 Ave neighs/atom = 54.513000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.352860267386, Press = -2.05545604494136 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -7894.1739 -7894.1739 -8024.592 -8024.592 252.3026 252.3026 123751.01 123751.01 780.44388 780.44388 9000 -7890.8958 -7890.8958 -8022.9872 -8022.9872 255.53983 255.53983 124078.44 124078.44 -297.39129 -297.39129 Loop time of 110.521 on 1 procs for 1000 steps with 4000 atoms Performance: 0.782 ns/day, 30.700 hours/ns, 9.048 timesteps/s 50.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 110.05 | 110.05 | 110.05 | 0.0 | 99.57 Neigh | 0.057921 | 0.057921 | 0.057921 | 0.0 | 0.05 Comm | 0.033743 | 0.033743 | 0.033743 | 0.0 | 0.03 Output | 3.28e-05 | 3.28e-05 | 3.28e-05 | 0.0 | 0.00 Modify | 0.34448 | 0.34448 | 0.34448 | 0.0 | 0.31 Other | | 0.03908 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4818.00 ave 4818 max 4818 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217980.0 ave 217980 max 217980 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217980 Ave neighs/atom = 54.495000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.036219903713, Press = -4.17413973842119 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -7890.8958 -7890.8958 -8022.9872 -8022.9872 255.53983 255.53983 124078.44 124078.44 -297.39129 -297.39129 10000 -7893.8706 -7893.8706 -8022.1557 -8022.1557 248.17624 248.17624 123995.74 123995.74 -8.3942096 -8.3942096 Loop time of 111.33 on 1 procs for 1000 steps with 4000 atoms Performance: 0.776 ns/day, 30.925 hours/ns, 8.982 timesteps/s 50.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 110.82 | 110.82 | 110.82 | 0.0 | 99.54 Neigh | 0.037289 | 0.037289 | 0.037289 | 0.0 | 0.03 Comm | 0.09943 | 0.09943 | 0.09943 | 0.0 | 0.09 Output | 3.61e-05 | 3.61e-05 | 3.61e-05 | 0.0 | 0.00 Modify | 0.3458 | 0.3458 | 0.3458 | 0.0 | 0.31 Other | | 0.02453 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4857.00 ave 4857 max 4857 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217844.0 ave 217844 max 217844 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217844 Ave neighs/atom = 54.461000 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.959943378043, Press = 0.271466885399601 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -7893.8706 -7893.8706 -8022.1557 -8022.1557 248.17624 248.17624 123995.74 123995.74 -8.3942096 -8.3942096 11000 -7894.1596 -7894.1596 -8024.5624 -8024.5624 252.27306 252.27306 123984.2 123984.2 -66.011859 -66.011859 Loop time of 110.222 on 1 procs for 1000 steps with 4000 atoms Performance: 0.784 ns/day, 30.617 hours/ns, 9.073 timesteps/s 50.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 109.89 | 109.89 | 109.89 | 0.0 | 99.70 Neigh | 0.018562 | 0.018562 | 0.018562 | 0.0 | 0.02 Comm | 0.033595 | 0.033595 | 0.033595 | 0.0 | 0.03 Output | 3.66e-05 | 3.66e-05 | 3.66e-05 | 0.0 | 0.00 Modify | 0.25649 | 0.25649 | 0.25649 | 0.0 | 0.23 Other | | 0.01841 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4965.00 ave 4965 max 4965 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217720.0 ave 217720 max 217720 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217720 Ave neighs/atom = 54.430000 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.848543440705, Press = -1.41826415512602 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -7894.1596 -7894.1596 -8024.5624 -8024.5624 252.27306 252.27306 123984.2 123984.2 -66.011859 -66.011859 12000 -7896.6504 -7896.6504 -8024.7124 -8024.7124 247.74464 247.74464 124001.1 124001.1 -174.23008 -174.23008 Loop time of 113.963 on 1 procs for 1000 steps with 4000 atoms Performance: 0.758 ns/day, 31.657 hours/ns, 8.775 timesteps/s 49.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 113.42 | 113.42 | 113.42 | 0.0 | 99.53 Neigh | 0.065818 | 0.065818 | 0.065818 | 0.0 | 0.06 Comm | 0.12391 | 0.12391 | 0.12391 | 0.0 | 0.11 Output | 3.61e-05 | 3.61e-05 | 3.61e-05 | 0.0 | 0.00 Modify | 0.31269 | 0.31269 | 0.31269 | 0.0 | 0.27 Other | | 0.0385 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4957.00 ave 4957 max 4957 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217756.0 ave 217756 max 217756 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217756 Ave neighs/atom = 54.439000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.875770071151, Press = -1.49752801643524 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -7896.6504 -7896.6504 -8024.7124 -8024.7124 247.74464 247.74464 124001.1 124001.1 -174.23008 -174.23008 13000 -7888.4568 -7888.4568 -8019.5151 -8019.5151 253.54112 253.54112 123983.79 123983.79 278.77471 278.77471 Loop time of 110.691 on 1 procs for 1000 steps with 4000 atoms Performance: 0.781 ns/day, 30.748 hours/ns, 9.034 timesteps/s 50.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 110.15 | 110.15 | 110.15 | 0.0 | 99.51 Neigh | 0.038977 | 0.038977 | 0.038977 | 0.0 | 0.04 Comm | 0.13415 | 0.13415 | 0.13415 | 0.0 | 0.12 Output | 2.9e-05 | 2.9e-05 | 2.9e-05 | 0.0 | 0.00 Modify | 0.33125 | 0.33125 | 0.33125 | 0.0 | 0.30 Other | | 0.03329 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4887.00 ave 4887 max 4887 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218004.0 ave 218004 max 218004 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218004 Ave neighs/atom = 54.501000 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.026813028823, Press = 0.311782312337382 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -7888.4568 -7888.4568 -8019.5151 -8019.5151 253.54112 253.54112 123983.79 123983.79 278.77471 278.77471 14000 -7893.9758 -7893.9758 -8025.4268 -8025.4268 254.30088 254.30088 123869.2 123869.2 287.67435 287.67435 Loop time of 107.455 on 1 procs for 1000 steps with 4000 atoms Performance: 0.804 ns/day, 29.849 hours/ns, 9.306 timesteps/s 52.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 106.98 | 106.98 | 106.98 | 0.0 | 99.56 Neigh | 0.075293 | 0.075293 | 0.075293 | 0.0 | 0.07 Comm | 0.045637 | 0.045637 | 0.045637 | 0.0 | 0.04 Output | 2.95e-05 | 2.95e-05 | 2.95e-05 | 0.0 | 0.00 Modify | 0.31859 | 0.31859 | 0.31859 | 0.0 | 0.30 Other | | 0.03832 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4838.00 ave 4838 max 4838 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217724.0 ave 217724 max 217724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217724 Ave neighs/atom = 54.431000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.122301629967, Press = -3.523657220894 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -7893.9758 -7893.9758 -8025.4268 -8025.4268 254.30088 254.30088 123869.2 123869.2 287.67435 287.67435 15000 -7895.5794 -7895.5794 -8024.3468 -8024.3468 249.1093 249.1093 124178.86 124178.86 -824.94026 -824.94026 Loop time of 104.648 on 1 procs for 1000 steps with 4000 atoms Performance: 0.826 ns/day, 29.069 hours/ns, 9.556 timesteps/s 53.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.94 | 103.94 | 103.94 | 0.0 | 99.32 Neigh | 0.078061 | 0.078061 | 0.078061 | 0.0 | 0.07 Comm | 0.19527 | 0.19527 | 0.19527 | 0.0 | 0.19 Output | 3.57e-05 | 3.57e-05 | 3.57e-05 | 0.0 | 0.00 Modify | 0.41704 | 0.41704 | 0.41704 | 0.0 | 0.40 Other | | 0.01974 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4979.00 ave 4979 max 4979 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218162.0 ave 218162 max 218162 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218162 Ave neighs/atom = 54.540500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.130911661004, Press = -0.33568619306303 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -7895.5794 -7895.5794 -8024.3468 -8024.3468 249.1093 249.1093 124178.86 124178.86 -824.94026 -824.94026 16000 -7893.7182 -7893.7182 -8024.4723 -8024.4723 252.9527 252.9527 123848.44 123848.44 407.17617 407.17617 Loop time of 100.92 on 1 procs for 1000 steps with 4000 atoms Performance: 0.856 ns/day, 28.033 hours/ns, 9.909 timesteps/s 55.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 100.55 | 100.55 | 100.55 | 0.0 | 99.63 Neigh | 0.009311 | 0.009311 | 0.009311 | 0.0 | 0.01 Comm | 0.10386 | 0.10386 | 0.10386 | 0.0 | 0.10 Output | 3.65e-05 | 3.65e-05 | 3.65e-05 | 0.0 | 0.00 Modify | 0.24136 | 0.24136 | 0.24136 | 0.0 | 0.24 Other | | 0.01836 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4942.00 ave 4942 max 4942 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218150.0 ave 218150 max 218150 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218150 Ave neighs/atom = 54.537500 Neighbor list builds = 1 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T253.15.out" else "print 'not_converged' file output/vol_T253.15.out" print '${V}' file output/vol_T253.15.out 123974.468210432 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0