# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.9497474655508995*${_u_distance} variable latticeconst_converted equal 4.9497474655508995*1 lattice fcc ${latticeconst_converted} lattice fcc 4.9497474655509 Lattice spacing in x,y,z = 4.9497475 4.9497475 4.9497475 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (49.497475 49.497475 49.497475) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms create_atoms CPU = 0.003 seconds variable mass_converted equal 207.2*${_u_mass} variable mass_converted equal 207.2*1 kim_interactions Pb #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_EtesamiBaskesLaradji_2018_PbSn__MO_162736908871_000 pair_coeff * * Pb #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 207.2 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 121268.812771005 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 121268.812771005*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 121268.812771005 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -8018.8057 -8018.8057 -8160 -8160 273.15 273.15 121268.81 121268.81 1243.6194 1243.6194 1000 -7861.6884 -7861.6884 -8001.2988 -8001.2988 270.08584 270.08584 124424.07 124424.07 -69.222464 -69.222464 Loop time of 113.764 on 1 procs for 1000 steps with 4000 atoms Performance: 0.759 ns/day, 31.601 hours/ns, 8.790 timesteps/s 48.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 113.26 | 113.26 | 113.26 | 0.0 | 99.56 Neigh | 0.033387 | 0.033387 | 0.033387 | 0.0 | 0.03 Comm | 0.073381 | 0.073381 | 0.073381 | 0.0 | 0.06 Output | 4.34e-05 | 4.34e-05 | 4.34e-05 | 0.0 | 0.00 Modify | 0.38032 | 0.38032 | 0.38032 | 0.0 | 0.33 Other | | 0.01857 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4951.00 ave 4951 max 4951 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218394.0 ave 218394 max 218394 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218394 Ave neighs/atom = 54.598500 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -7861.6884 -7861.6884 -8001.2988 -8001.2988 270.08584 270.08584 124424.07 124424.07 -69.222464 -69.222464 2000 -7872.7643 -7872.7643 -8008.2327 -8008.2327 262.07269 262.07269 124325.98 124325.98 -253.49619 -253.49619 Loop time of 117.116 on 1 procs for 1000 steps with 4000 atoms Performance: 0.738 ns/day, 32.532 hours/ns, 8.539 timesteps/s 47.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 116.64 | 116.64 | 116.64 | 0.0 | 99.60 Neigh | 0.0572 | 0.0572 | 0.0572 | 0.0 | 0.05 Comm | 0.084643 | 0.084643 | 0.084643 | 0.0 | 0.07 Output | 5.02e-05 | 5.02e-05 | 5.02e-05 | 0.0 | 0.00 Modify | 0.27862 | 0.27862 | 0.27862 | 0.0 | 0.24 Other | | 0.05246 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4863.00 ave 4863 max 4863 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218104.0 ave 218104 max 218104 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218104 Ave neighs/atom = 54.526000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -7872.7643 -7872.7643 -8008.2327 -8008.2327 262.07269 262.07269 124325.98 124325.98 -253.49619 -253.49619 3000 -7869.1601 -7869.1601 -8009.5603 -8009.5603 271.61381 271.61381 124199.29 124199.29 57.589478 57.589478 Loop time of 113.675 on 1 procs for 1000 steps with 4000 atoms Performance: 0.760 ns/day, 31.576 hours/ns, 8.797 timesteps/s 49.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 113.08 | 113.08 | 113.08 | 0.0 | 99.48 Neigh | 0.071 | 0.071 | 0.071 | 0.0 | 0.06 Comm | 0.076456 | 0.076456 | 0.076456 | 0.0 | 0.07 Output | 4.96e-05 | 4.96e-05 | 4.96e-05 | 0.0 | 0.00 Modify | 0.38812 | 0.38812 | 0.38812 | 0.0 | 0.34 Other | | 0.05802 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4848.00 ave 4848 max 4848 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217790.0 ave 217790 max 217790 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217790 Ave neighs/atom = 54.447500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -7869.1601 -7869.1601 -8009.5603 -8009.5603 271.61381 271.61381 124199.29 124199.29 57.589478 57.589478 4000 -7872.3595 -7872.3595 -8014.6777 -8014.6777 275.32427 275.32427 124092.7 124092.7 218.50456 218.50456 Loop time of 118.553 on 1 procs for 1000 steps with 4000 atoms Performance: 0.729 ns/day, 32.931 hours/ns, 8.435 timesteps/s 47.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 118.05 | 118.05 | 118.05 | 0.0 | 99.57 Neigh | 0.064021 | 0.064021 | 0.064021 | 0.0 | 0.05 Comm | 0.033976 | 0.033976 | 0.033976 | 0.0 | 0.03 Output | 4.93e-05 | 4.93e-05 | 4.93e-05 | 0.0 | 0.00 Modify | 0.36651 | 0.36651 | 0.36651 | 0.0 | 0.31 Other | | 0.04072 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4899.00 ave 4899 max 4899 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218042.0 ave 218042 max 218042 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218042 Ave neighs/atom = 54.510500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -7872.3595 -7872.3595 -8014.6777 -8014.6777 275.32427 275.32427 124092.7 124092.7 218.50456 218.50456 5000 -7867.1723 -7867.1723 -8008.468 -8008.468 273.34612 273.34612 124376.08 124376.08 -401.53062 -401.53062 Loop time of 117.458 on 1 procs for 1000 steps with 4000 atoms Performance: 0.736 ns/day, 32.627 hours/ns, 8.514 timesteps/s 47.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 116.93 | 116.93 | 116.93 | 0.0 | 99.55 Neigh | 0.025428 | 0.025428 | 0.025428 | 0.0 | 0.02 Comm | 0.10002 | 0.10002 | 0.10002 | 0.0 | 0.09 Output | 3.5e-05 | 3.5e-05 | 3.5e-05 | 0.0 | 0.00 Modify | 0.36917 | 0.36917 | 0.36917 | 0.0 | 0.31 Other | | 0.03667 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4794.00 ave 4794 max 4794 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218344.0 ave 218344 max 218344 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218344 Ave neighs/atom = 54.586000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 271.852616786076, Press = -83.7080585216004 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -7867.1723 -7867.1723 -8008.468 -8008.468 273.34612 273.34612 124376.08 124376.08 -401.53062 -401.53062 6000 -7869.2897 -7869.2897 -8010.8563 -8010.8563 273.87015 273.87015 124160.59 124160.59 298.52368 298.52368 Loop time of 113.931 on 1 procs for 1000 steps with 4000 atoms Performance: 0.758 ns/day, 31.648 hours/ns, 8.777 timesteps/s 49.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 113.55 | 113.55 | 113.55 | 0.0 | 99.67 Neigh | 0.066219 | 0.066219 | 0.066219 | 0.0 | 0.06 Comm | 0.033682 | 0.033682 | 0.033682 | 0.0 | 0.03 Output | 3.75e-05 | 3.75e-05 | 3.75e-05 | 0.0 | 0.00 Modify | 0.26188 | 0.26188 | 0.26188 | 0.0 | 0.23 Other | | 0.01781 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4900.00 ave 4900 max 4900 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217926.0 ave 217926 max 217926 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217926 Ave neighs/atom = 54.481500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.5587514178, Press = -7.80707379362285 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -7869.2897 -7869.2897 -8010.8563 -8010.8563 273.87015 273.87015 124160.59 124160.59 298.52368 298.52368 7000 -7871.0015 -7871.0015 -8012.7374 -8012.7374 274.19767 274.19767 124252.99 124252.99 -234.25967 -234.25967 Loop time of 107.064 on 1 procs for 1000 steps with 4000 atoms Performance: 0.807 ns/day, 29.740 hours/ns, 9.340 timesteps/s 52.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 106.43 | 106.43 | 106.43 | 0.0 | 99.41 Neigh | 0.04611 | 0.04611 | 0.04611 | 0.0 | 0.04 Comm | 0.14856 | 0.14856 | 0.14856 | 0.0 | 0.14 Output | 3.72e-05 | 3.72e-05 | 3.72e-05 | 0.0 | 0.00 Modify | 0.42314 | 0.42314 | 0.42314 | 0.0 | 0.40 Other | | 0.01805 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4852.00 ave 4852 max 4852 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218064.0 ave 218064 max 218064 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218064 Ave neighs/atom = 54.516000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.427927455317, Press = 6.7845716122316 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -7871.0015 -7871.0015 -8012.7374 -8012.7374 274.19767 274.19767 124252.99 124252.99 -234.25967 -234.25967 8000 -7873.0846 -7873.0846 -8013.2948 -8013.2948 271.24626 271.24626 124195.24 124195.24 -68.851137 -68.851137 Loop time of 113.465 on 1 procs for 1000 steps with 4000 atoms Performance: 0.761 ns/day, 31.518 hours/ns, 8.813 timesteps/s 49.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 112.95 | 112.95 | 112.95 | 0.0 | 99.54 Neigh | 0.048234 | 0.048234 | 0.048234 | 0.0 | 0.04 Comm | 0.07401 | 0.07401 | 0.07401 | 0.0 | 0.07 Output | 3.68e-05 | 3.68e-05 | 3.68e-05 | 0.0 | 0.00 Modify | 0.37351 | 0.37351 | 0.37351 | 0.0 | 0.33 Other | | 0.0222 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4884.00 ave 4884 max 4884 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218064.0 ave 218064 max 218064 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218064 Ave neighs/atom = 54.516000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.363030056223, Press = -7.28104001330665 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -7873.0846 -7873.0846 -8013.2948 -8013.2948 271.24626 271.24626 124195.24 124195.24 -68.851137 -68.851137 9000 -7864.0736 -7864.0736 -8009.0555 -8009.0555 280.47721 280.47721 124221.43 124221.43 204.31265 204.31265 Loop time of 109.752 on 1 procs for 1000 steps with 4000 atoms Performance: 0.787 ns/day, 30.487 hours/ns, 9.111 timesteps/s 51.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 109.39 | 109.39 | 109.39 | 0.0 | 99.67 Neigh | 0.025674 | 0.025674 | 0.025674 | 0.0 | 0.02 Comm | 0.073566 | 0.073566 | 0.073566 | 0.0 | 0.07 Output | 3.74e-05 | 3.74e-05 | 3.74e-05 | 0.0 | 0.00 Modify | 0.24174 | 0.24174 | 0.24174 | 0.0 | 0.22 Other | | 0.01771 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4814.00 ave 4814 max 4814 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217974.0 ave 217974 max 217974 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217974 Ave neighs/atom = 54.493500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.447088626403, Press = 1.61295615719124 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -7864.0736 -7864.0736 -8009.0555 -8009.0555 280.47721 280.47721 124221.43 124221.43 204.31265 204.31265 10000 -7873.705 -7873.705 -8011.8537 -8011.8537 267.25815 267.25815 124243.14 124243.14 -164.99998 -164.99998 Loop time of 109.191 on 1 procs for 1000 steps with 4000 atoms Performance: 0.791 ns/day, 30.331 hours/ns, 9.158 timesteps/s 51.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 108.73 | 108.73 | 108.73 | 0.0 | 99.58 Neigh | 0.077807 | 0.077807 | 0.077807 | 0.0 | 0.07 Comm | 0.054491 | 0.054491 | 0.054491 | 0.0 | 0.05 Output | 3.64e-05 | 3.64e-05 | 3.64e-05 | 0.0 | 0.00 Modify | 0.31181 | 0.31181 | 0.31181 | 0.0 | 0.29 Other | | 0.018 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4935.00 ave 4935 max 4935 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218042.0 ave 218042 max 218042 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218042 Ave neighs/atom = 54.510500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.449681861622, Press = -2.9310774259428 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -7873.705 -7873.705 -8011.8537 -8011.8537 267.25815 267.25815 124243.14 124243.14 -164.99998 -164.99998 11000 -7874.8637 -7874.8637 -8014.053 -8014.053 269.27109 269.27109 124050.94 124050.94 469.26875 469.26875 Loop time of 108.751 on 1 procs for 1000 steps with 4000 atoms Performance: 0.794 ns/day, 30.208 hours/ns, 9.195 timesteps/s 51.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 108.23 | 108.23 | 108.23 | 0.0 | 99.52 Neigh | 0.084804 | 0.084804 | 0.084804 | 0.0 | 0.08 Comm | 0.054054 | 0.054054 | 0.054054 | 0.0 | 0.05 Output | 3.53e-05 | 3.53e-05 | 3.53e-05 | 0.0 | 0.00 Modify | 0.32274 | 0.32274 | 0.32274 | 0.0 | 0.30 Other | | 0.05788 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4857.00 ave 4857 max 4857 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217768.0 ave 217768 max 217768 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217768 Ave neighs/atom = 54.442000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.22113185849, Press = 2.55345881742124 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -7874.8637 -7874.8637 -8014.053 -8014.053 269.27109 269.27109 124050.94 124050.94 469.26875 469.26875 12000 -7872.8183 -7872.8183 -8011.7373 -8011.7373 268.74821 268.74821 124379.11 124379.11 -620.84124 -620.84124 Loop time of 109.627 on 1 procs for 1000 steps with 4000 atoms Performance: 0.788 ns/day, 30.452 hours/ns, 9.122 timesteps/s 51.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 109.1 | 109.1 | 109.1 | 0.0 | 99.52 Neigh | 0.11597 | 0.11597 | 0.11597 | 0.0 | 0.11 Comm | 0.051181 | 0.051181 | 0.051181 | 0.0 | 0.05 Output | 2.64e-05 | 2.64e-05 | 2.64e-05 | 0.0 | 0.00 Modify | 0.28409 | 0.28409 | 0.28409 | 0.0 | 0.26 Other | | 0.0782 | | | 0.07 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4807.00 ave 4807 max 4807 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217752.0 ave 217752 max 217752 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217752 Ave neighs/atom = 54.438000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.073279241955, Press = -1.28012062972688 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -7872.8183 -7872.8183 -8011.7373 -8011.7373 268.74821 268.74821 124379.11 124379.11 -620.84124 -620.84124 13000 -7872.3499 -7872.3499 -8011.3104 -8011.3104 268.82833 268.82833 124184.33 124184.33 126.6497 126.6497 Loop time of 108.654 on 1 procs for 1000 steps with 4000 atoms Performance: 0.795 ns/day, 30.182 hours/ns, 9.204 timesteps/s 51.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 108.13 | 108.13 | 108.13 | 0.0 | 99.52 Neigh | 0.066822 | 0.066822 | 0.066822 | 0.0 | 0.06 Comm | 0.053609 | 0.053609 | 0.053609 | 0.0 | 0.05 Output | 3.65e-05 | 3.65e-05 | 3.65e-05 | 0.0 | 0.00 Modify | 0.38191 | 0.38191 | 0.38191 | 0.0 | 0.35 Other | | 0.01798 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4905.00 ave 4905 max 4905 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218136.0 ave 218136 max 218136 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218136 Ave neighs/atom = 54.534000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 124202.39762522 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0