# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.9497474655508995*${_u_distance} variable latticeconst_converted equal 4.9497474655508995*1 lattice fcc ${latticeconst_converted} lattice fcc 4.9497474655509 Lattice spacing in x,y,z = 4.9497475 4.9497475 4.9497475 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (49.497475 49.497475 49.497475) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms create_atoms CPU = 0.003 seconds variable mass_converted equal 207.2*${_u_mass} variable mass_converted equal 207.2*1 kim_interactions Pb #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_EtesamiBaskesLaradji_2018_PbSn__MO_162736908871_000 pair_coeff * * Pb #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 207.2 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 121268.812771005 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 121268.812771005*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 121268.812771005 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -8008.4674 -8008.4674 -8160 -8160 293.15 293.15 121268.81 121268.81 1334.677 1334.677 1000 -7838.492 -7838.492 -7987.9509 -7987.9509 289.13838 289.13838 124762.48 124762.48 -357.52213 -357.52213 Loop time of 114.891 on 1 procs for 1000 steps with 4000 atoms Performance: 0.752 ns/day, 31.914 hours/ns, 8.704 timesteps/s 48.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 114.4 | 114.4 | 114.4 | 0.0 | 99.58 Neigh | 0.047667 | 0.047667 | 0.047667 | 0.0 | 0.04 Comm | 0.078729 | 0.078729 | 0.078729 | 0.0 | 0.07 Output | 4.73e-05 | 4.73e-05 | 4.73e-05 | 0.0 | 0.00 Modify | 0.33153 | 0.33153 | 0.33153 | 0.0 | 0.29 Other | | 0.02799 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4893.00 ave 4893 max 4893 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218304.0 ave 218304 max 218304 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218304 Ave neighs/atom = 54.576000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -7838.492 -7838.492 -7987.9509 -7987.9509 289.13838 289.13838 124762.48 124762.48 -357.52213 -357.52213 2000 -7850.2898 -7850.2898 -7996.7073 -7996.7073 283.25455 283.25455 124488.67 124488.67 -23.153932 -23.153932 Loop time of 111.643 on 1 procs for 1000 steps with 4000 atoms Performance: 0.774 ns/day, 31.012 hours/ns, 8.957 timesteps/s 49.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 111.19 | 111.19 | 111.19 | 0.0 | 99.59 Neigh | 0.094835 | 0.094835 | 0.094835 | 0.0 | 0.08 Comm | 0.053638 | 0.053638 | 0.053638 | 0.0 | 0.05 Output | 4.15e-05 | 4.15e-05 | 4.15e-05 | 0.0 | 0.00 Modify | 0.24954 | 0.24954 | 0.24954 | 0.0 | 0.22 Other | | 0.0589 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4812.00 ave 4812 max 4812 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218568.0 ave 218568 max 218568 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218568 Ave neighs/atom = 54.642000 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -7850.2898 -7850.2898 -7996.7073 -7996.7073 283.25455 283.25455 124488.67 124488.67 -23.153932 -23.153932 3000 -7847.8065 -7847.8065 -7998.5788 -7998.5788 291.67935 291.67935 124459.83 124459.83 -105.32417 -105.32417 Loop time of 112.488 on 1 procs for 1000 steps with 4000 atoms Performance: 0.768 ns/day, 31.247 hours/ns, 8.890 timesteps/s 49.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 112.06 | 112.06 | 112.06 | 0.0 | 99.62 Neigh | 0.039271 | 0.039271 | 0.039271 | 0.0 | 0.03 Comm | 0.033702 | 0.033702 | 0.033702 | 0.0 | 0.03 Output | 4.78e-05 | 4.78e-05 | 4.78e-05 | 0.0 | 0.00 Modify | 0.31832 | 0.31832 | 0.31832 | 0.0 | 0.28 Other | | 0.03781 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4847.00 ave 4847 max 4847 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218008.0 ave 218008 max 218008 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218008 Ave neighs/atom = 54.502000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -7847.8065 -7847.8065 -7998.5788 -7998.5788 291.67935 291.67935 124459.83 124459.83 -105.32417 -105.32417 4000 -7851.4094 -7851.4094 -8003.3054 -8003.3054 293.85317 293.85317 124369.74 124369.74 9.35431 9.35431 Loop time of 116.036 on 1 procs for 1000 steps with 4000 atoms Performance: 0.745 ns/day, 32.232 hours/ns, 8.618 timesteps/s 48.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 115.66 | 115.66 | 115.66 | 0.0 | 99.67 Neigh | 0.025749 | 0.025749 | 0.025749 | 0.0 | 0.02 Comm | 0.034308 | 0.034308 | 0.034308 | 0.0 | 0.03 Output | 3.99e-05 | 3.99e-05 | 3.99e-05 | 0.0 | 0.00 Modify | 0.30106 | 0.30106 | 0.30106 | 0.0 | 0.26 Other | | 0.01798 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4855.00 ave 4855 max 4855 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218014.0 ave 218014 max 218014 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218014 Ave neighs/atom = 54.503500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -7851.4094 -7851.4094 -8003.3054 -8003.3054 293.85317 293.85317 124369.74 124369.74 9.35431 9.35431 5000 -7846.1413 -7846.1413 -7997.7314 -7997.7314 293.26142 293.26142 124516.15 124516.15 -123.78332 -123.78332 Loop time of 115.459 on 1 procs for 1000 steps with 4000 atoms Performance: 0.748 ns/day, 32.072 hours/ns, 8.661 timesteps/s 48.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 114.93 | 114.93 | 114.93 | 0.0 | 99.54 Neigh | 0.026241 | 0.026241 | 0.026241 | 0.0 | 0.02 Comm | 0.053892 | 0.053892 | 0.053892 | 0.0 | 0.05 Output | 3.67e-05 | 3.67e-05 | 3.67e-05 | 0.0 | 0.00 Modify | 0.41599 | 0.41599 | 0.41599 | 0.0 | 0.36 Other | | 0.03805 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4807.00 ave 4807 max 4807 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218374.0 ave 218374 max 218374 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218374 Ave neighs/atom = 54.593500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.009966820783, Press = 102.294446411578 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -7846.1413 -7846.1413 -7997.7314 -7997.7314 293.26142 293.26142 124516.15 124516.15 -123.78332 -123.78332 6000 -7847.8954 -7847.8954 -7999.4925 -7999.4925 293.27487 293.27487 124566.73 124566.73 -365.4579 -365.4579 Loop time of 111.842 on 1 procs for 1000 steps with 4000 atoms Performance: 0.773 ns/day, 31.067 hours/ns, 8.941 timesteps/s 49.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 111.28 | 111.28 | 111.28 | 0.0 | 99.50 Neigh | 0.042096 | 0.042096 | 0.042096 | 0.0 | 0.04 Comm | 0.15615 | 0.15615 | 0.15615 | 0.0 | 0.14 Output | 3.61e-05 | 3.61e-05 | 3.61e-05 | 0.0 | 0.00 Modify | 0.33646 | 0.33646 | 0.33646 | 0.0 | 0.30 Other | | 0.02342 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4875.00 ave 4875 max 4875 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217952.0 ave 217952 max 217952 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217952 Ave neighs/atom = 54.488000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.594001355747, Press = 1.19221903957816 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -7847.8954 -7847.8954 -7999.4925 -7999.4925 293.27487 293.27487 124566.73 124566.73 -365.4579 -365.4579 7000 -7849.5046 -7849.5046 -8001.4808 -8001.4808 294.00828 294.00828 124373.25 124373.25 127.56934 127.56934 Loop time of 108.361 on 1 procs for 1000 steps with 4000 atoms Performance: 0.797 ns/day, 30.100 hours/ns, 9.228 timesteps/s 51.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 107.91 | 107.91 | 107.91 | 0.0 | 99.58 Neigh | 0.025852 | 0.025852 | 0.025852 | 0.0 | 0.02 Comm | 0.064389 | 0.064389 | 0.064389 | 0.0 | 0.06 Output | 3.66e-05 | 3.66e-05 | 3.66e-05 | 0.0 | 0.00 Modify | 0.3246 | 0.3246 | 0.3246 | 0.0 | 0.30 Other | | 0.03662 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4828.00 ave 4828 max 4828 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218164.0 ave 218164 max 218164 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218164 Ave neighs/atom = 54.541000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.405619873871, Press = -4.95523361884431 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -7849.5046 -7849.5046 -8001.4808 -8001.4808 294.00828 294.00828 124373.25 124373.25 127.56934 127.56934 8000 -7853.9647 -7853.9647 -8004.2882 -8004.2882 290.81095 290.81095 124133.6 124133.6 845.95375 845.95375 Loop time of 107.085 on 1 procs for 1000 steps with 4000 atoms Performance: 0.807 ns/day, 29.746 hours/ns, 9.338 timesteps/s 52.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 106.7 | 106.7 | 106.7 | 0.0 | 99.64 Neigh | 0.065134 | 0.065134 | 0.065134 | 0.0 | 0.06 Comm | 0.054346 | 0.054346 | 0.054346 | 0.0 | 0.05 Output | 3.55e-05 | 3.55e-05 | 3.55e-05 | 0.0 | 0.00 Modify | 0.24673 | 0.24673 | 0.24673 | 0.0 | 0.23 Other | | 0.0183 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4865.00 ave 4865 max 4865 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218490.0 ave 218490 max 218490 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218490 Ave neighs/atom = 54.622500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.316481653718, Press = 5.09426351685194 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -7853.9647 -7853.9647 -8004.2882 -8004.2882 290.81095 290.81095 124133.6 124133.6 845.95375 845.95375 9000 -7850.1528 -7850.1528 -8002.1961 -8002.1961 294.13811 294.13811 124397.74 124397.74 60.251521 60.251521 Loop time of 110.337 on 1 procs for 1000 steps with 4000 atoms Performance: 0.783 ns/day, 30.649 hours/ns, 9.063 timesteps/s 50.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 109.81 | 109.81 | 109.81 | 0.0 | 99.52 Neigh | 0.077234 | 0.077234 | 0.077234 | 0.0 | 0.07 Comm | 0.12446 | 0.12446 | 0.12446 | 0.0 | 0.11 Output | 3.59e-05 | 3.59e-05 | 3.59e-05 | 0.0 | 0.00 Modify | 0.29704 | 0.29704 | 0.29704 | 0.0 | 0.27 Other | | 0.03074 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4811.00 ave 4811 max 4811 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218188.0 ave 218188 max 218188 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218188 Ave neighs/atom = 54.547000 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.091856295547, Press = 5.18449899730504 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -7850.1528 -7850.1528 -8002.1961 -8002.1961 294.13811 294.13811 124397.74 124397.74 60.251521 60.251521 10000 -7848.1965 -7848.1965 -8000.1394 -8000.1394 293.94383 293.94383 124547.02 124547.02 -403.87545 -403.87545 Loop time of 108.334 on 1 procs for 1000 steps with 4000 atoms Performance: 0.798 ns/day, 30.093 hours/ns, 9.231 timesteps/s 51.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 107.95 | 107.95 | 107.95 | 0.0 | 99.65 Neigh | 0.047984 | 0.047984 | 0.047984 | 0.0 | 0.04 Comm | 0.064866 | 0.064866 | 0.064866 | 0.0 | 0.06 Output | 3.63e-05 | 3.63e-05 | 3.63e-05 | 0.0 | 0.00 Modify | 0.25289 | 0.25289 | 0.25289 | 0.0 | 0.23 Other | | 0.01791 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4853.00 ave 4853 max 4853 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218268.0 ave 218268 max 218268 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218268 Ave neighs/atom = 54.567000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.246850969404, Press = 0.398498628657262 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -7848.1965 -7848.1965 -8000.1394 -8000.1394 293.94383 293.94383 124547.02 124547.02 -403.87545 -403.87545 11000 -7848.7892 -7848.7892 -8001.9841 -8001.9841 296.36587 296.36587 124375.18 124375.18 184.99134 184.99134 Loop time of 107.383 on 1 procs for 1000 steps with 4000 atoms Performance: 0.805 ns/day, 29.829 hours/ns, 9.312 timesteps/s 51.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 106.97 | 106.97 | 106.97 | 0.0 | 99.62 Neigh | 0.02428 | 0.02428 | 0.02428 | 0.0 | 0.02 Comm | 0.05364 | 0.05364 | 0.05364 | 0.0 | 0.05 Output | 3.76e-05 | 3.76e-05 | 3.76e-05 | 0.0 | 0.00 Modify | 0.29456 | 0.29456 | 0.29456 | 0.0 | 0.27 Other | | 0.03979 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4879.00 ave 4879 max 4879 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217990.0 ave 217990 max 217990 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217990 Ave neighs/atom = 54.497500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.221732968281, Press = -2.18615514176077 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -7848.7892 -7848.7892 -8001.9841 -8001.9841 296.36587 296.36587 124375.18 124375.18 184.99134 184.99134 12000 -7848.1841 -7848.1841 -8001.9068 -8001.9068 297.38694 297.38694 124227.38 124227.38 701.34034 701.34034 Loop time of 109.512 on 1 procs for 1000 steps with 4000 atoms Performance: 0.789 ns/day, 30.420 hours/ns, 9.131 timesteps/s 50.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 109.01 | 109.01 | 109.01 | 0.0 | 99.54 Neigh | 0.056071 | 0.056071 | 0.056071 | 0.0 | 0.05 Comm | 0.083383 | 0.083383 | 0.083383 | 0.0 | 0.08 Output | 3.68e-05 | 3.68e-05 | 3.68e-05 | 0.0 | 0.00 Modify | 0.30626 | 0.30626 | 0.30626 | 0.0 | 0.28 Other | | 0.05803 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4834.00 ave 4834 max 4834 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217864.0 ave 217864 max 217864 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217864 Ave neighs/atom = 54.466000 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.20128966924, Press = -0.599358922139369 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -7848.1841 -7848.1841 -8001.9068 -8001.9068 297.38694 297.38694 124227.38 124227.38 701.34034 701.34034 13000 -7849.4516 -7849.4516 -8002.7382 -8002.7382 296.54331 296.54331 124295.99 124295.99 452.47213 452.47213 Loop time of 111.191 on 1 procs for 1000 steps with 4000 atoms Performance: 0.777 ns/day, 30.886 hours/ns, 8.994 timesteps/s 50.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 110.66 | 110.66 | 110.66 | 0.0 | 99.53 Neigh | 0.044022 | 0.044022 | 0.044022 | 0.0 | 0.04 Comm | 0.053692 | 0.053692 | 0.053692 | 0.0 | 0.05 Output | 3.67e-05 | 3.67e-05 | 3.67e-05 | 0.0 | 0.00 Modify | 0.39168 | 0.39168 | 0.39168 | 0.0 | 0.35 Other | | 0.03818 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4846.00 ave 4846 max 4846 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218274.0 ave 218274 max 218274 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218274 Ave neighs/atom = 54.568500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.198499729367, Press = 1.22318191079851 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -7849.4516 -7849.4516 -8002.7382 -8002.7382 296.54331 296.54331 124295.99 124295.99 452.47213 452.47213 14000 -7848.9884 -7848.9884 -7999.9126 -7999.9126 291.97309 291.97309 124396.76 124396.76 214.79174 214.79174 Loop time of 106.041 on 1 procs for 1000 steps with 4000 atoms Performance: 0.815 ns/day, 29.456 hours/ns, 9.430 timesteps/s 52.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.6 | 105.6 | 105.6 | 0.0 | 99.59 Neigh | 0.046215 | 0.046215 | 0.046215 | 0.0 | 0.04 Comm | 0.073437 | 0.073437 | 0.073437 | 0.0 | 0.07 Output | 3.67e-05 | 3.67e-05 | 3.67e-05 | 0.0 | 0.00 Modify | 0.28182 | 0.28182 | 0.28182 | 0.0 | 0.27 Other | | 0.03772 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4771.00 ave 4771 max 4771 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217992.0 ave 217992 max 217992 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217992 Ave neighs/atom = 54.498000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.205500108156, Press = 0.65362812656334 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -7848.9884 -7848.9884 -7999.9126 -7999.9126 291.97309 291.97309 124396.76 124396.76 214.79174 214.79174 15000 -7848.4738 -7848.4738 -7999.2377 -7999.2377 291.66302 291.66302 124429.9 124429.9 112.60639 112.60639 Loop time of 106.039 on 1 procs for 1000 steps with 4000 atoms Performance: 0.815 ns/day, 29.455 hours/ns, 9.431 timesteps/s 52.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.65 | 105.65 | 105.65 | 0.0 | 99.63 Neigh | 0.052614 | 0.052614 | 0.052614 | 0.0 | 0.05 Comm | 0.033459 | 0.033459 | 0.033459 | 0.0 | 0.03 Output | 2.88e-05 | 2.88e-05 | 2.88e-05 | 0.0 | 0.00 Modify | 0.28446 | 0.28446 | 0.28446 | 0.0 | 0.27 Other | | 0.01774 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4881.00 ave 4881 max 4881 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218180.0 ave 218180 max 218180 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218180 Ave neighs/atom = 54.545000 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.227125104257, Press = 0.756690536369534 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -7848.4738 -7848.4738 -7999.2377 -7999.2377 291.66302 291.66302 124429.9 124429.9 112.60639 112.60639 16000 -7852.2752 -7852.2752 -8004.5955 -8004.5955 294.6739 294.6739 124461.75 124461.75 -326.99388 -326.99388 Loop time of 104.293 on 1 procs for 1000 steps with 4000 atoms Performance: 0.828 ns/day, 28.970 hours/ns, 9.588 timesteps/s 53.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.9 | 103.9 | 103.9 | 0.0 | 99.62 Neigh | 0.067106 | 0.067106 | 0.067106 | 0.0 | 0.06 Comm | 0.039076 | 0.039076 | 0.039076 | 0.0 | 0.04 Output | 3.7e-05 | 3.7e-05 | 3.7e-05 | 0.0 | 0.00 Modify | 0.2261 | 0.2261 | 0.2261 | 0.0 | 0.22 Other | | 0.06421 | | | 0.06 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4832.00 ave 4832 max 4832 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218400.0 ave 218400 max 218400 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218400 Ave neighs/atom = 54.600000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 124432.545121625 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0