# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.9497474655508995*${_u_distance} variable latticeconst_converted equal 4.9497474655508995*1 lattice fcc ${latticeconst_converted} lattice fcc 4.9497474655509 Lattice spacing in x,y,z = 4.9497475 4.9497475 4.9497475 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (49.497475 49.497475 49.497475) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (49.497475 49.497475 49.497475) create_atoms CPU = 0.005 seconds variable mass_converted equal 207.2*${_u_mass} variable mass_converted equal 207.2*1 kim_interactions Pb WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Pb #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_EtesamiBaskesLaradji_2018_PbSn__MO_162736908871_001 pair_coeff * * Pb #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 207.2 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 121268.812771005 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*${_u_distance}) variable V0_metal equal 121268.812771005/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 121268.812771005*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 121268.812771005 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_162736908871_001#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -8018.8057 -8018.8057 -8160 -8160 273.15 273.15 121268.81 121268.81 1243.6194 1243.6194 1000 -7861.6884 -7861.6884 -8001.2988 -8001.2988 270.08584 270.08584 124424.07 124424.07 -69.222464 -69.222464 Loop time of 260.975 on 1 procs for 1000 steps with 4000 atoms Performance: 0.331 ns/day, 72.493 hours/ns, 3.832 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 260 | 260 | 260 | 0.0 | 99.63 Neigh | 0.078304 | 0.078304 | 0.078304 | 0.0 | 0.03 Comm | 0.14318 | 0.14318 | 0.14318 | 0.0 | 0.05 Output | 0.00022365 | 0.00022365 | 0.00022365 | 0.0 | 0.00 Modify | 0.65286 | 0.65286 | 0.65286 | 0.0 | 0.25 Other | | 0.09806 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4951.00 ave 4951 max 4951 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218394.0 ave 218394 max 218394 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218394 Ave neighs/atom = 54.598500 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -7861.6884 -7861.6884 -8001.2988 -8001.2988 270.08584 270.08584 124424.07 124424.07 -69.222464 -69.222464 2000 -7872.7643 -7872.7643 -8008.2327 -8008.2327 262.07269 262.07269 124325.98 124325.98 -253.49619 -253.49619 Loop time of 260.293 on 1 procs for 1000 steps with 4000 atoms Performance: 0.332 ns/day, 72.303 hours/ns, 3.842 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 259.31 | 259.31 | 259.31 | 0.0 | 99.62 Neigh | 0.11762 | 0.11762 | 0.11762 | 0.0 | 0.05 Comm | 0.12958 | 0.12958 | 0.12958 | 0.0 | 0.05 Output | 0.00026243 | 0.00026243 | 0.00026243 | 0.0 | 0.00 Modify | 0.64109 | 0.64109 | 0.64109 | 0.0 | 0.25 Other | | 0.09722 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4863.00 ave 4863 max 4863 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218104.0 ave 218104 max 218104 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218104 Ave neighs/atom = 54.526000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -7872.7643 -7872.7643 -8008.2327 -8008.2327 262.07269 262.07269 124325.98 124325.98 -253.49619 -253.49619 3000 -7869.1601 -7869.1601 -8009.5603 -8009.5603 271.61381 271.61381 124199.29 124199.29 57.589478 57.589478 Loop time of 260.978 on 1 procs for 1000 steps with 4000 atoms Performance: 0.331 ns/day, 72.494 hours/ns, 3.832 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 259.99 | 259.99 | 259.99 | 0.0 | 99.62 Neigh | 0.11788 | 0.11788 | 0.11788 | 0.0 | 0.05 Comm | 0.12979 | 0.12979 | 0.12979 | 0.0 | 0.05 Output | 0.00021571 | 0.00021571 | 0.00021571 | 0.0 | 0.00 Modify | 0.63973 | 0.63973 | 0.63973 | 0.0 | 0.25 Other | | 0.0968 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4848.00 ave 4848 max 4848 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217790.0 ave 217790 max 217790 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217790 Ave neighs/atom = 54.447500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -7869.1601 -7869.1601 -8009.5603 -8009.5603 271.61381 271.61381 124199.29 124199.29 57.589478 57.589478 4000 -7872.3595 -7872.3595 -8014.6777 -8014.6777 275.32427 275.32427 124092.7 124092.7 218.50456 218.50456 Loop time of 261.605 on 1 procs for 1000 steps with 4000 atoms Performance: 0.330 ns/day, 72.668 hours/ns, 3.823 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 260.62 | 260.62 | 260.62 | 0.0 | 99.62 Neigh | 0.11787 | 0.11787 | 0.11787 | 0.0 | 0.05 Comm | 0.13021 | 0.13021 | 0.13021 | 0.0 | 0.05 Output | 0.00025907 | 0.00025907 | 0.00025907 | 0.0 | 0.00 Modify | 0.64111 | 0.64111 | 0.64111 | 0.0 | 0.25 Other | | 0.09736 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4899.00 ave 4899 max 4899 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218042.0 ave 218042 max 218042 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218042 Ave neighs/atom = 54.510500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -7872.3595 -7872.3595 -8014.6777 -8014.6777 275.32427 275.32427 124092.7 124092.7 218.50456 218.50456 5000 -7867.1723 -7867.1723 -8008.468 -8008.468 273.34612 273.34612 124376.08 124376.08 -401.53062 -401.53062 Loop time of 260.556 on 1 procs for 1000 steps with 4000 atoms Performance: 0.332 ns/day, 72.377 hours/ns, 3.838 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 259.57 | 259.57 | 259.57 | 0.0 | 99.62 Neigh | 0.1175 | 0.1175 | 0.1175 | 0.0 | 0.05 Comm | 0.12983 | 0.12983 | 0.12983 | 0.0 | 0.05 Output | 0.00017532 | 0.00017532 | 0.00017532 | 0.0 | 0.00 Modify | 0.64317 | 0.64317 | 0.64317 | 0.0 | 0.25 Other | | 0.09638 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4794.00 ave 4794 max 4794 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218344.0 ave 218344 max 218344 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218344 Ave neighs/atom = 54.586000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 271.852616786075, Press = -83.7080585208182 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -7867.1723 -7867.1723 -8008.468 -8008.468 273.34612 273.34612 124376.08 124376.08 -401.53062 -401.53062 6000 -7869.2897 -7869.2897 -8010.8563 -8010.8563 273.87015 273.87015 124160.59 124160.59 298.52368 298.52368 Loop time of 261.496 on 1 procs for 1000 steps with 4000 atoms Performance: 0.330 ns/day, 72.638 hours/ns, 3.824 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 260.49 | 260.49 | 260.49 | 0.0 | 99.61 Neigh | 0.11778 | 0.11778 | 0.11778 | 0.0 | 0.05 Comm | 0.13148 | 0.13148 | 0.13148 | 0.0 | 0.05 Output | 0.00017919 | 0.00017919 | 0.00017919 | 0.0 | 0.00 Modify | 0.66318 | 0.66318 | 0.66318 | 0.0 | 0.25 Other | | 0.09785 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4900.00 ave 4900 max 4900 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217926.0 ave 217926 max 217926 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217926 Ave neighs/atom = 54.481500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.558751417803, Press = -7.80707379366787 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -7869.2897 -7869.2897 -8010.8563 -8010.8563 273.87015 273.87015 124160.59 124160.59 298.52368 298.52368 7000 -7871.0015 -7871.0015 -8012.7374 -8012.7374 274.19767 274.19767 124252.99 124252.99 -234.25967 -234.25967 Loop time of 261.69 on 1 procs for 1000 steps with 4000 atoms Performance: 0.330 ns/day, 72.692 hours/ns, 3.821 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 260.68 | 260.68 | 260.68 | 0.0 | 99.61 Neigh | 0.11777 | 0.11777 | 0.11777 | 0.0 | 0.05 Comm | 0.12874 | 0.12874 | 0.12874 | 0.0 | 0.05 Output | 0.00017884 | 0.00017884 | 0.00017884 | 0.0 | 0.00 Modify | 0.66474 | 0.66474 | 0.66474 | 0.0 | 0.25 Other | | 0.0966 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4852.00 ave 4852 max 4852 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218064.0 ave 218064 max 218064 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218064 Ave neighs/atom = 54.516000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.427927455317, Press = 6.78457161229246 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -7871.0015 -7871.0015 -8012.7374 -8012.7374 274.19767 274.19767 124252.99 124252.99 -234.25967 -234.25967 8000 -7873.0846 -7873.0846 -8013.2948 -8013.2948 271.24626 271.24626 124195.24 124195.24 -68.851137 -68.851137 Loop time of 261.246 on 1 procs for 1000 steps with 4000 atoms Performance: 0.331 ns/day, 72.568 hours/ns, 3.828 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 260.23 | 260.23 | 260.23 | 0.0 | 99.61 Neigh | 0.11812 | 0.11812 | 0.11812 | 0.0 | 0.05 Comm | 0.13102 | 0.13102 | 0.13102 | 0.0 | 0.05 Output | 0.00017675 | 0.00017675 | 0.00017675 | 0.0 | 0.00 Modify | 0.66594 | 0.66594 | 0.66594 | 0.0 | 0.25 Other | | 0.09781 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4884.00 ave 4884 max 4884 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218064.0 ave 218064 max 218064 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218064 Ave neighs/atom = 54.516000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.363030056225, Press = -7.28104001328567 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -7873.0846 -7873.0846 -8013.2948 -8013.2948 271.24626 271.24626 124195.24 124195.24 -68.851137 -68.851137 9000 -7864.0736 -7864.0736 -8009.0555 -8009.0555 280.47721 280.47721 124221.43 124221.43 204.31265 204.31265 Loop time of 263.141 on 1 procs for 1000 steps with 4000 atoms Performance: 0.328 ns/day, 73.095 hours/ns, 3.800 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 262.13 | 262.13 | 262.13 | 0.0 | 99.62 Neigh | 0.11836 | 0.11836 | 0.11836 | 0.0 | 0.04 Comm | 0.13226 | 0.13226 | 0.13226 | 0.0 | 0.05 Output | 0.00018195 | 0.00018195 | 0.00018195 | 0.0 | 0.00 Modify | 0.66589 | 0.66589 | 0.66589 | 0.0 | 0.25 Other | | 0.09548 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4814.00 ave 4814 max 4814 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217974.0 ave 217974 max 217974 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217974 Ave neighs/atom = 54.493500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.44708862639, Press = 1.61295615710885 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.228 | 4.228 | 4.228 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -7864.0736 -7864.0736 -8009.0555 -8009.0555 280.47721 280.47721 124221.43 124221.43 204.31265 204.31265 10000 -7873.705 -7873.705 -8011.8537 -8011.8537 267.25815 267.25815 124243.14 124243.14 -164.99998 -164.99998 Loop time of 261.487 on 1 procs for 1000 steps with 4000 atoms Performance: 0.330 ns/day, 72.635 hours/ns, 3.824 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 260.48 | 260.48 | 260.48 | 0.0 | 99.61 Neigh | 0.11798 | 0.11798 | 0.11798 | 0.0 | 0.05 Comm | 0.12917 | 0.12917 | 0.12917 | 0.0 | 0.05 Output | 0.00017757 | 0.00017757 | 0.00017757 | 0.0 | 0.00 Modify | 0.66461 | 0.66461 | 0.66461 | 0.0 | 0.25 Other | | 0.09701 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4935.00 ave 4935 max 4935 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218042.0 ave 218042 max 218042 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218042 Ave neighs/atom = 54.510500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.449681861603, Press = -2.93107742586599 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -7873.705 -7873.705 -8011.8537 -8011.8537 267.25815 267.25815 124243.14 124243.14 -164.99998 -164.99998 11000 -7874.8637 -7874.8637 -8014.053 -8014.053 269.27109 269.27109 124050.94 124050.94 469.26875 469.26875 Loop time of 261.802 on 1 procs for 1000 steps with 4000 atoms Performance: 0.330 ns/day, 72.723 hours/ns, 3.820 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 260.79 | 260.79 | 260.79 | 0.0 | 99.61 Neigh | 0.11799 | 0.11799 | 0.11799 | 0.0 | 0.05 Comm | 0.13114 | 0.13114 | 0.13114 | 0.0 | 0.05 Output | 0.00017756 | 0.00017756 | 0.00017756 | 0.0 | 0.00 Modify | 0.66396 | 0.66396 | 0.66396 | 0.0 | 0.25 Other | | 0.09694 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4857.00 ave 4857 max 4857 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217768.0 ave 217768 max 217768 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217768 Ave neighs/atom = 54.442000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.221131858469, Press = 2.55345881738643 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -7874.8637 -7874.8637 -8014.053 -8014.053 269.27109 269.27109 124050.94 124050.94 469.26875 469.26875 12000 -7872.8183 -7872.8183 -8011.7373 -8011.7373 268.74821 268.74821 124379.11 124379.11 -620.84124 -620.84124 Loop time of 262.176 on 1 procs for 1000 steps with 4000 atoms Performance: 0.330 ns/day, 72.827 hours/ns, 3.814 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 261.17 | 261.17 | 261.17 | 0.0 | 99.62 Neigh | 0.11753 | 0.11753 | 0.11753 | 0.0 | 0.04 Comm | 0.12861 | 0.12861 | 0.12861 | 0.0 | 0.05 Output | 0.00018028 | 0.00018028 | 0.00018028 | 0.0 | 0.00 Modify | 0.66488 | 0.66488 | 0.66488 | 0.0 | 0.25 Other | | 0.09636 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4807.00 ave 4807 max 4807 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 217752.0 ave 217752 max 217752 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 217752 Ave neighs/atom = 54.438000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.073279241939, Press = -1.28012062967002 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5 ghost atom cutoff = 7.5 binsize = 3.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.229 | 4.229 | 4.229 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -7872.8183 -7872.8183 -8011.7373 -8011.7373 268.74821 268.74821 124379.11 124379.11 -620.84124 -620.84124 13000 -7872.3499 -7872.3499 -8011.3104 -8011.3104 268.82833 268.82833 124184.33 124184.33 126.6497 126.6497 Loop time of 261.471 on 1 procs for 1000 steps with 4000 atoms Performance: 0.330 ns/day, 72.631 hours/ns, 3.825 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 260.46 | 260.46 | 260.46 | 0.0 | 99.61 Neigh | 0.11819 | 0.11819 | 0.11819 | 0.0 | 0.05 Comm | 0.13004 | 0.13004 | 0.13004 | 0.0 | 0.05 Output | 0.00022587 | 0.00022587 | 0.00022587 | 0.0 | 0.00 Modify | 0.66432 | 0.66432 | 0.66432 | 0.0 | 0.25 Other | | 0.09735 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 4905.00 ave 4905 max 4905 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218136.0 ave 218136 max 218136 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218136 Ave neighs/atom = 54.534000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 124202.39762522 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0