# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.94974747300148*${_u_distance} variable latticeconst_converted equal 4.94974747300148*1 lattice fcc ${latticeconst_converted} lattice fcc 4.94974747300148 Lattice spacing in x,y,z = 4.9497475 4.9497475 4.9497475 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (49.497475 49.497475 49.497475) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (49.497475 49.497475 49.497475) create_atoms CPU = 0.003 seconds variable mass_converted equal 207.2*${_u_mass} variable mass_converted equal 207.2*1 kim_interactions Pb WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Pb #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_KimLee_2017_MgPb__MO_325675357262_001 pair_coeff * * Pb #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 207.2 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 121268.813318623 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.813318623/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.813318623/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.813318623/(1*1*${_u_distance}) variable V0_metal equal 121268.813318623/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 121268.813318623*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 121268.813318623 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 253.15*${_u_temperature} variable temp_converted equal 253.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 253.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "253.15 - 0.2" variable T_up equal "253.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_325675357262_001#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.613 | 4.613 | 4.613 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -8029.1439 -8029.1439 -8160 -8160 253.15 253.15 121268.81 121268.81 1152.5622 1152.5622 1000 -7880.5102 -7880.5102 -8022.472 -8022.472 274.63472 274.63472 123764.56 123764.56 508.08097 508.08097 Loop time of 326.486 on 1 procs for 1000 steps with 4000 atoms Performance: 0.265 ns/day, 90.691 hours/ns, 3.063 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 325.51 | 325.51 | 325.51 | 0.0 | 99.70 Neigh | 0.092718 | 0.092718 | 0.092718 | 0.0 | 0.03 Comm | 0.14389 | 0.14389 | 0.14389 | 0.0 | 0.04 Output | 0.00026103 | 0.00026103 | 0.00026103 | 0.0 | 0.00 Modify | 0.64425 | 0.64425 | 0.64425 | 0.0 | 0.20 Other | | 0.09589 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5837.00 ave 5837 max 5837 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 283402.0 ave 283402 max 283402 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 283402 Ave neighs/atom = 70.850500 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -7880.5102 -7880.5102 -8022.472 -8022.472 274.63472 274.63472 123764.56 123764.56 508.08097 508.08097 2000 -7890.6261 -7890.6261 -8023.1052 -8023.1052 256.28981 256.28981 123919.16 123919.16 -66.556786 -66.556786 Loop time of 320.107 on 1 procs for 1000 steps with 4000 atoms Performance: 0.270 ns/day, 88.919 hours/ns, 3.124 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 319.09 | 319.09 | 319.09 | 0.0 | 99.68 Neigh | 0.14024 | 0.14024 | 0.14024 | 0.0 | 0.04 Comm | 0.14543 | 0.14543 | 0.14543 | 0.0 | 0.05 Output | 0.00025823 | 0.00025823 | 0.00025823 | 0.0 | 0.00 Modify | 0.63876 | 0.63876 | 0.63876 | 0.0 | 0.20 Other | | 0.09666 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 284882.0 ave 284882 max 284882 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 284882 Ave neighs/atom = 71.220500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -7890.6261 -7890.6261 -8023.1052 -8023.1052 256.28981 256.28981 123919.16 123919.16 -66.556786 -66.556786 3000 -7884.5478 -7884.5478 -8018.4232 -8018.4232 258.99109 258.99109 124082.67 124082.67 -294.57555 -294.57555 Loop time of 320.324 on 1 procs for 1000 steps with 4000 atoms Performance: 0.270 ns/day, 88.979 hours/ns, 3.122 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 319.4 | 319.4 | 319.4 | 0.0 | 99.71 Neigh | 0.046817 | 0.046817 | 0.046817 | 0.0 | 0.01 Comm | 0.14522 | 0.14522 | 0.14522 | 0.0 | 0.05 Output | 0.0002131 | 0.0002131 | 0.0002131 | 0.0 | 0.00 Modify | 0.63968 | 0.63968 | 0.63968 | 0.0 | 0.20 Other | | 0.0967 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 285686.0 ave 285686 max 285686 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 285686 Ave neighs/atom = 71.421500 Neighbor list builds = 1 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -7884.5478 -7884.5478 -8018.4232 -8018.4232 258.99109 258.99109 124082.67 124082.67 -294.57555 -294.57555 4000 -7893.1713 -7893.1713 -8020.6732 -8020.6732 246.66104 246.66104 123936.33 123936.33 35.41123 35.41123 Loop time of 320.594 on 1 procs for 1000 steps with 4000 atoms Performance: 0.269 ns/day, 89.054 hours/ns, 3.119 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 319.62 | 319.62 | 319.62 | 0.0 | 99.70 Neigh | 0.093391 | 0.093391 | 0.093391 | 0.0 | 0.03 Comm | 0.14369 | 0.14369 | 0.14369 | 0.0 | 0.04 Output | 0.00021002 | 0.00021002 | 0.00021002 | 0.0 | 0.00 Modify | 0.63636 | 0.63636 | 0.63636 | 0.0 | 0.20 Other | | 0.09669 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 286376.0 ave 286376 max 286376 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 286376 Ave neighs/atom = 71.594000 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -7893.1713 -7893.1713 -8020.6732 -8020.6732 246.66104 246.66104 123936.33 123936.33 35.41123 35.41123 5000 -7888.0426 -7888.0426 -8021.9931 -8021.9931 259.13633 259.13633 123983.25 123983.25 -143.41618 -143.41618 Loop time of 318.418 on 1 procs for 1000 steps with 4000 atoms Performance: 0.271 ns/day, 88.450 hours/ns, 3.141 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 317.54 | 317.54 | 317.54 | 0.0 | 99.72 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.14138 | 0.14138 | 0.14138 | 0.0 | 0.04 Output | 0.00017939 | 0.00017939 | 0.00017939 | 0.0 | 0.00 Modify | 0.63972 | 0.63972 | 0.63972 | 0.0 | 0.20 Other | | 0.09687 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 284926.0 ave 284926 max 284926 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 284926 Ave neighs/atom = 71.231500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 260.508431614416, Press = -84.3656260897776 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -7888.0426 -7888.0426 -8021.9931 -8021.9931 259.13633 259.13633 123983.25 123983.25 -143.41618 -143.41618 6000 -7897.2853 -7897.2853 -8025.9138 -8025.9138 248.84047 248.84047 123844.35 123844.35 55.72873 55.72873 Loop time of 320.352 on 1 procs for 1000 steps with 4000 atoms Performance: 0.270 ns/day, 88.987 hours/ns, 3.122 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 319.36 | 319.36 | 319.36 | 0.0 | 99.69 Neigh | 0.093437 | 0.093437 | 0.093437 | 0.0 | 0.03 Comm | 0.14328 | 0.14328 | 0.14328 | 0.0 | 0.04 Output | 0.00022944 | 0.00022944 | 0.00022944 | 0.0 | 0.00 Modify | 0.66143 | 0.66143 | 0.66143 | 0.0 | 0.21 Other | | 0.09633 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 286174.0 ave 286174 max 286174 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 286174 Ave neighs/atom = 71.543500 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.637289258092, Press = 1.16530964649832 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -7897.2853 -7897.2853 -8025.9138 -8025.9138 248.84047 248.84047 123844.35 123844.35 55.72873 55.72873 7000 -7893.2456 -7893.2456 -8024.2388 -8024.2388 253.41516 253.41516 123807.25 123807.25 297.31625 297.31625 Loop time of 321.222 on 1 procs for 1000 steps with 4000 atoms Performance: 0.269 ns/day, 89.228 hours/ns, 3.113 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 320.22 | 320.22 | 320.22 | 0.0 | 99.69 Neigh | 0.093811 | 0.093811 | 0.093811 | 0.0 | 0.03 Comm | 0.14476 | 0.14476 | 0.14476 | 0.0 | 0.05 Output | 0.00017624 | 0.00017624 | 0.00017624 | 0.0 | 0.00 Modify | 0.66152 | 0.66152 | 0.66152 | 0.0 | 0.21 Other | | 0.09663 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 285538.0 ave 285538 max 285538 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 285538 Ave neighs/atom = 71.384500 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.269036129187, Press = -8.14426523957734 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -7893.2456 -7893.2456 -8024.2388 -8024.2388 253.41516 253.41516 123807.25 123807.25 297.31625 297.31625 8000 -7893.5497 -7893.5497 -8022.2824 -8022.2824 249.04212 249.04212 124110.51 124110.51 -700.97758 -700.97758 Loop time of 320.866 on 1 procs for 1000 steps with 4000 atoms Performance: 0.269 ns/day, 89.130 hours/ns, 3.117 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 319.82 | 319.82 | 319.82 | 0.0 | 99.67 Neigh | 0.14047 | 0.14047 | 0.14047 | 0.0 | 0.04 Comm | 0.14585 | 0.14585 | 0.14585 | 0.0 | 0.05 Output | 0.00022288 | 0.00022288 | 0.00022288 | 0.0 | 0.00 Modify | 0.66281 | 0.66281 | 0.66281 | 0.0 | 0.21 Other | | 0.09566 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 285740.0 ave 285740 max 285740 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 285740 Ave neighs/atom = 71.435000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.290671402122, Press = 1.22841979116429 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -7893.5497 -7893.5497 -8022.2824 -8022.2824 249.04212 249.04212 124110.51 124110.51 -700.97758 -700.97758 9000 -7898.2433 -7898.2433 -8026.6057 -8026.6057 248.32582 248.32582 123718.72 123718.72 471.61009 471.61009 Loop time of 326.896 on 1 procs for 1000 steps with 4000 atoms Performance: 0.264 ns/day, 90.805 hours/ns, 3.059 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 325.83 | 325.83 | 325.83 | 0.0 | 99.67 Neigh | 0.14118 | 0.14118 | 0.14118 | 0.0 | 0.04 Comm | 0.14932 | 0.14932 | 0.14932 | 0.0 | 0.05 Output | 0.00023287 | 0.00023287 | 0.00023287 | 0.0 | 0.00 Modify | 0.67784 | 0.67784 | 0.67784 | 0.0 | 0.21 Other | | 0.09644 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5837.00 ave 5837 max 5837 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 284962.0 ave 284962 max 284962 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 284962 Ave neighs/atom = 71.240500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.106710692874, Press = 1.30227547262023 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -7898.2433 -7898.2433 -8026.6057 -8026.6057 248.32582 248.32582 123718.72 123718.72 471.61009 471.61009 10000 -7899.828 -7899.828 -8028.6595 -8028.6595 249.23319 249.23319 123895.1 123895.1 -297.52018 -297.52018 Loop time of 374.112 on 1 procs for 1000 steps with 4000 atoms Performance: 0.231 ns/day, 103.920 hours/ns, 2.673 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 372.9 | 372.9 | 372.9 | 0.0 | 99.68 Neigh | 0.10193 | 0.10193 | 0.10193 | 0.0 | 0.03 Comm | 0.16778 | 0.16778 | 0.16778 | 0.0 | 0.04 Output | 0.00017986 | 0.00017986 | 0.00017986 | 0.0 | 0.00 Modify | 0.83461 | 0.83461 | 0.83461 | 0.0 | 0.22 Other | | 0.1058 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 285378.0 ave 285378 max 285378 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 285378 Ave neighs/atom = 71.344500 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.985692394159, Press = -4.07239972962351 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -7899.828 -7899.828 -8028.6595 -8028.6595 249.23319 249.23319 123895.1 123895.1 -297.52018 -297.52018 11000 -7894.6012 -7894.6012 -8024.2894 -8024.2894 250.89066 250.89066 123900.26 123900.26 8.0376094 8.0376094 Loop time of 375.482 on 1 procs for 1000 steps with 4000 atoms Performance: 0.230 ns/day, 104.301 hours/ns, 2.663 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 374.27 | 374.27 | 374.27 | 0.0 | 99.68 Neigh | 0.10201 | 0.10201 | 0.10201 | 0.0 | 0.03 Comm | 0.16834 | 0.16834 | 0.16834 | 0.0 | 0.04 Output | 0.00021738 | 0.00021738 | 0.00021738 | 0.0 | 0.00 Modify | 0.83253 | 0.83253 | 0.83253 | 0.0 | 0.22 Other | | 0.1057 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 285026.0 ave 285026 max 285026 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 285026 Ave neighs/atom = 71.256500 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.934124884872, Press = 1.00301808035474 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -7894.6012 -7894.6012 -8024.2894 -8024.2894 250.89066 250.89066 123900.26 123900.26 8.0376094 8.0376094 12000 -7891.9901 -7891.9901 -8024.6326 -8024.6326 256.60586 256.60586 123825.65 123825.65 263.53115 263.53115 Loop time of 374.769 on 1 procs for 1000 steps with 4000 atoms Performance: 0.231 ns/day, 104.103 hours/ns, 2.668 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 373.5 | 373.5 | 373.5 | 0.0 | 99.66 Neigh | 0.15409 | 0.15409 | 0.15409 | 0.0 | 0.04 Comm | 0.16874 | 0.16874 | 0.16874 | 0.0 | 0.05 Output | 0.00022917 | 0.00022917 | 0.00022917 | 0.0 | 0.00 Modify | 0.83601 | 0.83601 | 0.83601 | 0.0 | 0.22 Other | | 0.1055 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 285572.0 ave 285572 max 285572 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 285572 Ave neighs/atom = 71.393000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.10898099729, Press = -1.34959001271588 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -7891.9901 -7891.9901 -8024.6326 -8024.6326 256.60586 256.60586 123825.65 123825.65 263.53115 263.53115 13000 -7890.4209 -7890.4209 -8022.8588 -8022.8588 256.21013 256.21013 124011.56 124011.56 -310.13613 -310.13613 Loop time of 329.594 on 1 procs for 1000 steps with 4000 atoms Performance: 0.262 ns/day, 91.554 hours/ns, 3.034 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 328.57 | 328.57 | 328.57 | 0.0 | 99.69 Neigh | 0.093734 | 0.093734 | 0.093734 | 0.0 | 0.03 Comm | 0.15181 | 0.15181 | 0.15181 | 0.0 | 0.05 Output | 0.00017813 | 0.00017813 | 0.00017813 | 0.0 | 0.00 Modify | 0.68564 | 0.68564 | 0.68564 | 0.0 | 0.21 Other | | 0.09439 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5839.00 ave 5839 max 5839 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 286114.0 ave 286114 max 286114 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 286114 Ave neighs/atom = 71.528500 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.083273685254, Press = -0.624334524863875 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -7890.4209 -7890.4209 -8022.8588 -8022.8588 256.21013 256.21013 124011.56 124011.56 -310.13613 -310.13613 14000 -7892.8557 -7892.8557 -8023.766 -8023.766 253.25479 253.25479 123893.56 123893.56 75.364326 75.364326 Loop time of 322.709 on 1 procs for 1000 steps with 4000 atoms Performance: 0.268 ns/day, 89.641 hours/ns, 3.099 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 321.71 | 321.71 | 321.71 | 0.0 | 99.69 Neigh | 0.094306 | 0.094306 | 0.094306 | 0.0 | 0.03 Comm | 0.14854 | 0.14854 | 0.14854 | 0.0 | 0.05 Output | 0.00017784 | 0.00017784 | 0.00017784 | 0.0 | 0.00 Modify | 0.6621 | 0.6621 | 0.6621 | 0.0 | 0.21 Other | | 0.09335 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 285916.0 ave 285916 max 285916 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 285916 Ave neighs/atom = 71.479000 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T253.15.out" else "print 'not_converged' file output/vol_T253.15.out" print '${V}' file output/vol_T253.15.out 123888.186754658 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0