# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.94974747300148*${_u_distance} variable latticeconst_converted equal 4.94974747300148*1 lattice fcc ${latticeconst_converted} lattice fcc 4.94974747300148 Lattice spacing in x,y,z = 4.9497475 4.9497475 4.9497475 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (49.497475 49.497475 49.497475) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0 0 0) to (49.497475 49.497475 49.497475) create_atoms CPU = 0.001 seconds variable mass_converted equal 207.2*${_u_mass} variable mass_converted equal 207.2*1 kim_interactions Pb WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Pb #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_KimLee_2017_MgPb__MO_325675357262_002 pair_coeff * * Pb #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 207.2 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 121268.813318623 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.813318623/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.813318623/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 121268.813318623/(1*1*${_u_distance}) variable V0_metal equal 121268.813318623/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 121268.813318623*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 121268.813318623 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 313.15*${_u_temperature} variable temp_converted equal 313.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 313.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "313.15 - 0.2" variable T_up equal "313.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_325675357262_002#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.613 | 4.613 | 4.613 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -7998.1292 -7998.1292 -8160 -8160 313.15 313.15 121268.81 121268.81 1425.7349 1425.7349 1000 -7810.8199 -7810.8199 -7982.425 -7982.425 331.98175 331.98175 124574.13 124574.13 284.04567 284.04567 Loop time of 60.546 on 1 procs for 1000 steps with 4000 atoms Performance: 1.427 ns/day, 16.818 hours/ns, 16.516 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 60.36 | 60.36 | 60.36 | 0.0 | 99.69 Neigh | 0.033738 | 0.033738 | 0.033738 | 0.0 | 0.06 Comm | 0.022494 | 0.022494 | 0.022494 | 0.0 | 0.04 Output | 0.00016247 | 0.00016247 | 0.00016247 | 0.0 | 0.00 Modify | 0.11852 | 0.11852 | 0.11852 | 0.0 | 0.20 Other | | 0.01088 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5835 ave 5835 max 5835 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 283770 ave 283770 max 283770 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 283770 Ave neighs/atom = 70.9425 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -7810.8199 -7810.8199 -7982.425 -7982.425 331.98175 331.98175 124574.13 124574.13 284.04567 284.04567 2000 -7825.5097 -7825.5097 -7986.9647 -7986.9647 312.34556 312.34556 124655.27 124655.27 -253.88873 -253.88873 Loop time of 59.5952 on 1 procs for 1000 steps with 4000 atoms Performance: 1.450 ns/day, 16.554 hours/ns, 16.780 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.411 | 59.411 | 59.411 | 0.0 | 99.69 Neigh | 0.033668 | 0.033668 | 0.033668 | 0.0 | 0.06 Comm | 0.02221 | 0.02221 | 0.02221 | 0.0 | 0.04 Output | 6.9089e-05 | 6.9089e-05 | 6.9089e-05 | 0.0 | 0.00 Modify | 0.11771 | 0.11771 | 0.11771 | 0.0 | 0.20 Other | | 0.01061 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281382 ave 281382 max 281382 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281382 Ave neighs/atom = 70.3455 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -7825.5097 -7825.5097 -7986.9647 -7986.9647 312.34556 312.34556 124655.27 124655.27 -253.88873 -253.88873 3000 -7820.9589 -7820.9589 -7983.2474 -7983.2474 313.95802 313.95802 124679.62 124679.62 -46.804218 -46.804218 Loop time of 59.6903 on 1 procs for 1000 steps with 4000 atoms Performance: 1.447 ns/day, 16.581 hours/ns, 16.753 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.506 | 59.506 | 59.506 | 0.0 | 99.69 Neigh | 0.033735 | 0.033735 | 0.033735 | 0.0 | 0.06 Comm | 0.022217 | 0.022217 | 0.022217 | 0.0 | 0.04 Output | 7.2196e-05 | 7.2196e-05 | 7.2196e-05 | 0.0 | 0.00 Modify | 0.11768 | 0.11768 | 0.11768 | 0.0 | 0.20 Other | | 0.01055 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5836 ave 5836 max 5836 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281308 ave 281308 max 281308 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281308 Ave neighs/atom = 70.327 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -7820.9589 -7820.9589 -7983.2474 -7983.2474 313.95802 313.95802 124679.62 124679.62 -46.804218 -46.804218 4000 -7827.53 -7827.53 -7986.7672 -7986.7672 308.05505 308.05505 124578.87 124578.87 92.801496 92.801496 Loop time of 59.7649 on 1 procs for 1000 steps with 4000 atoms Performance: 1.446 ns/day, 16.601 hours/ns, 16.732 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.581 | 59.581 | 59.581 | 0.0 | 99.69 Neigh | 0.033735 | 0.033735 | 0.033735 | 0.0 | 0.06 Comm | 0.022374 | 0.022374 | 0.022374 | 0.0 | 0.04 Output | 6.9761e-05 | 6.9761e-05 | 6.9761e-05 | 0.0 | 0.00 Modify | 0.1175 | 0.1175 | 0.1175 | 0.0 | 0.20 Other | | 0.01058 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281244 ave 281244 max 281244 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281244 Ave neighs/atom = 70.311 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -7827.53 -7827.53 -7986.7672 -7986.7672 308.05505 308.05505 124578.87 124578.87 92.801496 92.801496 5000 -7820.5865 -7820.5865 -7986.9578 -7986.9578 321.85657 321.85657 124525.2 124525.2 328.51407 328.51407 Loop time of 59.4749 on 1 procs for 1000 steps with 4000 atoms Performance: 1.453 ns/day, 16.521 hours/ns, 16.814 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.291 | 59.291 | 59.291 | 0.0 | 99.69 Neigh | 0.033622 | 0.033622 | 0.033622 | 0.0 | 0.06 Comm | 0.022198 | 0.022198 | 0.022198 | 0.0 | 0.04 Output | 4.8841e-05 | 4.8841e-05 | 4.8841e-05 | 0.0 | 0.00 Modify | 0.11797 | 0.11797 | 0.11797 | 0.0 | 0.20 Other | | 0.01057 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5840 ave 5840 max 5840 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279904 ave 279904 max 279904 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279904 Ave neighs/atom = 69.976 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 320.132397407954, Press = 135.936794916582 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -7820.5865 -7820.5865 -7986.9578 -7986.9578 321.85657 321.85657 124525.2 124525.2 328.51407 328.51407 6000 -7831.3694 -7831.3694 -7993.5584 -7993.5584 313.76556 313.76556 124500.58 124500.58 -50.837061 -50.837061 Loop time of 59.8845 on 1 procs for 1000 steps with 4000 atoms Performance: 1.443 ns/day, 16.635 hours/ns, 16.699 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.696 | 59.696 | 59.696 | 0.0 | 99.69 Neigh | 0.033783 | 0.033783 | 0.033783 | 0.0 | 0.06 Comm | 0.022224 | 0.022224 | 0.022224 | 0.0 | 0.04 Output | 5.2078e-05 | 5.2078e-05 | 5.2078e-05 | 0.0 | 0.00 Modify | 0.12199 | 0.12199 | 0.12199 | 0.0 | 0.20 Other | | 0.01056 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281234 ave 281234 max 281234 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281234 Ave neighs/atom = 70.3085 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.849902634571, Press = 9.39009798159171 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -7831.3694 -7831.3694 -7993.5584 -7993.5584 313.76556 313.76556 124500.58 124500.58 -50.837061 -50.837061 7000 -7829.6005 -7829.6005 -7990.8683 -7990.8683 311.98337 311.98337 124573.52 124573.52 -192.29316 -192.29316 Loop time of 59.7322 on 1 procs for 1000 steps with 4000 atoms Performance: 1.446 ns/day, 16.592 hours/ns, 16.741 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.533 | 59.533 | 59.533 | 0.0 | 99.67 Neigh | 0.044856 | 0.044856 | 0.044856 | 0.0 | 0.08 Comm | 0.022339 | 0.022339 | 0.022339 | 0.0 | 0.04 Output | 4.9803e-05 | 4.9803e-05 | 4.9803e-05 | 0.0 | 0.00 Modify | 0.12184 | 0.12184 | 0.12184 | 0.0 | 0.20 Other | | 0.01056 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 280674 ave 280674 max 280674 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 280674 Ave neighs/atom = 70.1685 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.317146141619, Press = 4.2150657017808 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -7829.6005 -7829.6005 -7990.8683 -7990.8683 311.98337 311.98337 124573.52 124573.52 -192.29316 -192.29316 8000 -7828.6996 -7828.6996 -7992.4525 -7992.4525 316.7911 316.7911 124538.61 124538.61 -148.07 -148.07 Loop time of 59.5622 on 1 procs for 1000 steps with 4000 atoms Performance: 1.451 ns/day, 16.545 hours/ns, 16.789 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.374 | 59.374 | 59.374 | 0.0 | 99.68 Neigh | 0.033704 | 0.033704 | 0.033704 | 0.0 | 0.06 Comm | 0.022231 | 0.022231 | 0.022231 | 0.0 | 0.04 Output | 5.0915e-05 | 5.0915e-05 | 5.0915e-05 | 0.0 | 0.00 Modify | 0.12188 | 0.12188 | 0.12188 | 0.0 | 0.20 Other | | 0.01057 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5838 ave 5838 max 5838 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281222 ave 281222 max 281222 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281222 Ave neighs/atom = 70.3055 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.333464127703, Press = 8.95924874100194 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -7828.6996 -7828.6996 -7992.4525 -7992.4525 316.7911 316.7911 124538.61 124538.61 -148.07 -148.07 9000 -7832.1383 -7832.1383 -7995.2945 -7995.2945 315.63683 315.63683 124608.66 124608.66 -548.05887 -548.05887 Loop time of 59.8381 on 1 procs for 1000 steps with 4000 atoms Performance: 1.444 ns/day, 16.622 hours/ns, 16.712 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.65 | 59.65 | 59.65 | 0.0 | 99.69 Neigh | 0.033646 | 0.033646 | 0.033646 | 0.0 | 0.06 Comm | 0.02229 | 0.02229 | 0.02229 | 0.0 | 0.04 Output | 5.1246e-05 | 5.1246e-05 | 5.1246e-05 | 0.0 | 0.00 Modify | 0.12189 | 0.12189 | 0.12189 | 0.0 | 0.20 Other | | 0.0106 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5837 ave 5837 max 5837 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281764 ave 281764 max 281764 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281764 Ave neighs/atom = 70.441 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.259900719707, Press = 3.23363651841127 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -7832.1383 -7832.1383 -7995.2945 -7995.2945 315.63683 315.63683 124608.66 124608.66 -548.05887 -548.05887 10000 -7826.4449 -7826.4449 -7989.8366 -7989.8366 316.0923 316.0923 124700.74 124700.74 -573.19703 -573.19703 Loop time of 59.6519 on 1 procs for 1000 steps with 4000 atoms Performance: 1.448 ns/day, 16.570 hours/ns, 16.764 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.464 | 59.464 | 59.464 | 0.0 | 99.68 Neigh | 0.033645 | 0.033645 | 0.033645 | 0.0 | 0.06 Comm | 0.022224 | 0.022224 | 0.022224 | 0.0 | 0.04 Output | 5.0185e-05 | 5.0185e-05 | 5.0185e-05 | 0.0 | 0.00 Modify | 0.12158 | 0.12158 | 0.12158 | 0.0 | 0.20 Other | | 0.0106 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5840 ave 5840 max 5840 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 280392 ave 280392 max 280392 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 280392 Ave neighs/atom = 70.098 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.318096201204, Press = 0.545879864290119 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -7826.4449 -7826.4449 -7989.8366 -7989.8366 316.0923 316.0923 124700.74 124700.74 -573.19703 -573.19703 11000 -7828.5362 -7828.5362 -7994.3566 -7994.3566 320.79084 320.79084 124400.08 124400.08 238.98072 238.98072 Loop time of 59.6645 on 1 procs for 1000 steps with 4000 atoms Performance: 1.448 ns/day, 16.573 hours/ns, 16.760 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.465 | 59.465 | 59.465 | 0.0 | 99.67 Neigh | 0.044799 | 0.044799 | 0.044799 | 0.0 | 0.08 Comm | 0.02234 | 0.02234 | 0.02234 | 0.0 | 0.04 Output | 5.0544e-05 | 5.0544e-05 | 5.0544e-05 | 0.0 | 0.00 Modify | 0.12159 | 0.12159 | 0.12159 | 0.0 | 0.20 Other | | 0.01057 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281086 ave 281086 max 281086 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281086 Ave neighs/atom = 70.2715 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.665148885328, Press = -0.464289110897305 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -7828.5362 -7828.5362 -7994.3566 -7994.3566 320.79084 320.79084 124400.08 124400.08 238.98072 238.98072 12000 -7831.3214 -7831.3214 -7990.4134 -7990.4134 307.77437 307.77437 124426.54 124426.54 400.27135 400.27135 Loop time of 59.7662 on 1 procs for 1000 steps with 4000 atoms Performance: 1.446 ns/day, 16.602 hours/ns, 16.732 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.566 | 59.566 | 59.566 | 0.0 | 99.67 Neigh | 0.044968 | 0.044968 | 0.044968 | 0.0 | 0.08 Comm | 0.02239 | 0.02239 | 0.02239 | 0.0 | 0.04 Output | 5.2428e-05 | 5.2428e-05 | 5.2428e-05 | 0.0 | 0.00 Modify | 0.12177 | 0.12177 | 0.12177 | 0.0 | 0.20 Other | | 0.01057 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281176 ave 281176 max 281176 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281176 Ave neighs/atom = 70.294 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.584470566146, Press = -0.282044713762605 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -7831.3214 -7831.3214 -7990.4134 -7990.4134 307.77437 307.77437 124426.54 124426.54 400.27135 400.27135 13000 -7828.1412 -7828.1412 -7988.0092 -7988.0092 309.2754 309.2754 124431.47 124431.47 524.62526 524.62526 Loop time of 59.7412 on 1 procs for 1000 steps with 4000 atoms Performance: 1.446 ns/day, 16.595 hours/ns, 16.739 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.553 | 59.553 | 59.553 | 0.0 | 99.68 Neigh | 0.033683 | 0.033683 | 0.033683 | 0.0 | 0.06 Comm | 0.022315 | 0.022315 | 0.022315 | 0.0 | 0.04 Output | 5.2439e-05 | 5.2439e-05 | 5.2439e-05 | 0.0 | 0.00 Modify | 0.12172 | 0.12172 | 0.12172 | 0.0 | 0.20 Other | | 0.01061 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 280526 ave 280526 max 280526 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 280526 Ave neighs/atom = 70.1315 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.626660456042, Press = 2.26011817673156 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -7828.1412 -7828.1412 -7988.0092 -7988.0092 309.2754 309.2754 124431.47 124431.47 524.62526 524.62526 14000 -7826.3973 -7826.3973 -7990.9195 -7990.9195 318.2793 318.2793 124438.73 124438.73 370.92126 370.92126 Loop time of 59.7418 on 1 procs for 1000 steps with 4000 atoms Performance: 1.446 ns/day, 16.595 hours/ns, 16.739 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.553 | 59.553 | 59.553 | 0.0 | 99.68 Neigh | 0.033736 | 0.033736 | 0.033736 | 0.0 | 0.06 Comm | 0.022263 | 0.022263 | 0.022263 | 0.0 | 0.04 Output | 9.8775e-05 | 9.8775e-05 | 9.8775e-05 | 0.0 | 0.00 Modify | 0.12173 | 0.12173 | 0.12173 | 0.0 | 0.20 Other | | 0.01056 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282136 ave 282136 max 282136 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282136 Ave neighs/atom = 70.534 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.510715769921, Press = 3.72297416133897 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -7826.3973 -7826.3973 -7990.9195 -7990.9195 318.2793 318.2793 124438.73 124438.73 370.92126 370.92126 15000 -7831.0568 -7831.0568 -7992.2472 -7992.2472 311.83389 311.83389 124517.53 124517.53 -44.183819 -44.183819 Loop time of 59.9152 on 1 procs for 1000 steps with 4000 atoms Performance: 1.442 ns/day, 16.643 hours/ns, 16.690 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.715 | 59.715 | 59.715 | 0.0 | 99.67 Neigh | 0.045002 | 0.045002 | 0.045002 | 0.0 | 0.08 Comm | 0.022384 | 0.022384 | 0.022384 | 0.0 | 0.04 Output | 5.0385e-05 | 5.0385e-05 | 5.0385e-05 | 0.0 | 0.00 Modify | 0.12181 | 0.12181 | 0.12181 | 0.0 | 0.20 Other | | 0.01054 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281214 ave 281214 max 281214 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281214 Ave neighs/atom = 70.3035 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.55803849788, Press = 2.70566076151598 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -7831.0568 -7831.0568 -7992.2472 -7992.2472 311.83389 311.83389 124517.53 124517.53 -44.183819 -44.183819 16000 -7831.2612 -7831.2612 -7991.9763 -7991.9763 310.91424 310.91424 124572.34 124572.34 -232.82459 -232.82459 Loop time of 59.8244 on 1 procs for 1000 steps with 4000 atoms Performance: 1.444 ns/day, 16.618 hours/ns, 16.716 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.635 | 59.635 | 59.635 | 0.0 | 99.68 Neigh | 0.033769 | 0.033769 | 0.033769 | 0.0 | 0.06 Comm | 0.022286 | 0.022286 | 0.022286 | 0.0 | 0.04 Output | 5.5464e-05 | 5.5464e-05 | 5.5464e-05 | 0.0 | 0.00 Modify | 0.12227 | 0.12227 | 0.12227 | 0.0 | 0.20 Other | | 0.01057 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5837 ave 5837 max 5837 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 280754 ave 280754 max 280754 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 280754 Ave neighs/atom = 70.1885 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.50589864567, Press = -0.0620484631477544 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -7831.2612 -7831.2612 -7991.9763 -7991.9763 310.91424 310.91424 124572.34 124572.34 -232.82459 -232.82459 17000 -7830.9811 -7830.9811 -7992.6964 -7992.6964 312.84925 312.84925 124607.81 124607.81 -439.87204 -439.87204 Loop time of 59.8506 on 1 procs for 1000 steps with 4000 atoms Performance: 1.444 ns/day, 16.625 hours/ns, 16.708 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.662 | 59.662 | 59.662 | 0.0 | 99.69 Neigh | 0.033762 | 0.033762 | 0.033762 | 0.0 | 0.06 Comm | 0.022235 | 0.022235 | 0.022235 | 0.0 | 0.04 Output | 5.1757e-05 | 5.1757e-05 | 5.1757e-05 | 0.0 | 0.00 Modify | 0.12171 | 0.12171 | 0.12171 | 0.0 | 0.20 Other | | 0.01055 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281498 ave 281498 max 281498 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281498 Ave neighs/atom = 70.3745 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.439205910992, Press = 0.860859627570345 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -7830.9811 -7830.9811 -7992.6964 -7992.6964 312.84925 312.84925 124607.81 124607.81 -439.87204 -439.87204 18000 -7829.0865 -7829.0865 -7990.9313 -7990.9313 313.09987 313.09987 124549.02 124549.02 -94.599358 -94.599358 Loop time of 59.8073 on 1 procs for 1000 steps with 4000 atoms Performance: 1.445 ns/day, 16.613 hours/ns, 16.720 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.619 | 59.619 | 59.619 | 0.0 | 99.69 Neigh | 0.033655 | 0.033655 | 0.033655 | 0.0 | 0.06 Comm | 0.022199 | 0.022199 | 0.022199 | 0.0 | 0.04 Output | 4.9503e-05 | 4.9503e-05 | 4.9503e-05 | 0.0 | 0.00 Modify | 0.12169 | 0.12169 | 0.12169 | 0.0 | 0.20 Other | | 0.01053 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 280550 ave 280550 max 280550 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 280550 Ave neighs/atom = 70.1375 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.370807104006, Press = 0.50836471551215 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -7829.0865 -7829.0865 -7990.9313 -7990.9313 313.09987 313.09987 124549.02 124549.02 -94.599358 -94.599358 19000 -7828.4291 -7828.4291 -7989.1508 -7989.1508 310.927 310.927 124648.74 124648.74 -352.31895 -352.31895 Loop time of 59.7066 on 1 procs for 1000 steps with 4000 atoms Performance: 1.447 ns/day, 16.585 hours/ns, 16.749 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.507 | 59.507 | 59.507 | 0.0 | 99.67 Neigh | 0.044919 | 0.044919 | 0.044919 | 0.0 | 0.08 Comm | 0.022326 | 0.022326 | 0.022326 | 0.0 | 0.04 Output | 5.1957e-05 | 5.1957e-05 | 5.1957e-05 | 0.0 | 0.00 Modify | 0.12171 | 0.12171 | 0.12171 | 0.0 | 0.20 Other | | 0.01052 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 280790 ave 280790 max 280790 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 280790 Ave neighs/atom = 70.1975 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.340855404336, Press = -0.875085582789503 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -7828.4291 -7828.4291 -7989.1508 -7989.1508 310.927 310.927 124648.74 124648.74 -352.31895 -352.31895 20000 -7826.0879 -7826.0879 -7989.4338 -7989.4338 316.00367 316.00367 124431.97 124431.97 455.72803 455.72803 Loop time of 59.8796 on 1 procs for 1000 steps with 4000 atoms Performance: 1.443 ns/day, 16.633 hours/ns, 16.700 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.68 | 59.68 | 59.68 | 0.0 | 99.67 Neigh | 0.044965 | 0.044965 | 0.044965 | 0.0 | 0.08 Comm | 0.022368 | 0.022368 | 0.022368 | 0.0 | 0.04 Output | 5.2318e-05 | 5.2318e-05 | 5.2318e-05 | 0.0 | 0.00 Modify | 0.12174 | 0.12174 | 0.12174 | 0.0 | 0.20 Other | | 0.01052 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5839 ave 5839 max 5839 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 280104 ave 280104 max 280104 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 280104 Ave neighs/atom = 70.026 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.178433411395, Press = -0.830331707121556 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -7826.0879 -7826.0879 -7989.4338 -7989.4338 316.00367 316.00367 124431.97 124431.97 455.72803 455.72803 21000 -7827.5842 -7827.5842 -7988.6372 -7988.6372 311.56811 311.56811 124418.94 124418.94 528.58779 528.58779 Loop time of 59.5493 on 1 procs for 1000 steps with 4000 atoms Performance: 1.451 ns/day, 16.541 hours/ns, 16.793 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.361 | 59.361 | 59.361 | 0.0 | 99.68 Neigh | 0.033656 | 0.033656 | 0.033656 | 0.0 | 0.06 Comm | 0.022297 | 0.022297 | 0.022297 | 0.0 | 0.04 Output | 5.1857e-05 | 5.1857e-05 | 5.1857e-05 | 0.0 | 0.00 Modify | 0.12177 | 0.12177 | 0.12177 | 0.0 | 0.20 Other | | 0.01056 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5831 ave 5831 max 5831 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 280632 ave 280632 max 280632 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 280632 Ave neighs/atom = 70.158 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T313.15.out" else "print 'not_converged' file output/vol_T313.15.out" print '${V}' file output/vol_T313.15.out 124534.261719048 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0