LAMMPS (18 Jun 2019) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:88) using 1 OpenMP thread(s) per MPI task Created triclinic box = (0 0 0) to (10.462 9.13454 10.1183) with tilt (-5.28488 -0.191991 -0.318531) WARNING: Triclinic box skew is large (src/domain.cpp:195) 1 by 1 by 1 MPI processor grid Scanning dump file ... Reading snapshot from dump file ... triclinic box = (0 0 0) to (10.462 9.13454 10.1183) with tilt (-5.28488 -0.191991 -0.318531) 0 atoms before read 64 atoms in snapshot 0 atoms purged 0 atoms replaced 0 atoms trimmed 64 atoms added 64 atoms after read 64 atoms in group all Changing box ... WARNING: Triclinic box skew is large (src/domain.cpp:195) triclinic box = (0 0 0) to (10.462 9.13454 10.1183) with tilt (-5.28488 -0.191991 -0.318531) WARNING: Triclinic box skew is large (src/domain.cpp:195) triclinic box = (0 0 0) to (10.462 9.13454 10.1183) with tilt (-5.28488 -0.191991 -0.318531) WARNING: Triclinic box skew is large (src/domain.cpp:195) triclinic box = (0 0 0) to (10.462 9.13454 10.1183) with tilt (-5.28488 -0.191991 -0.318531) WARNING: Triclinic box skew is large (src/domain.cpp:195) triclinic box = (0 0 0) to (10.462 9.13454 10.1183) with tilt (-5.28488 -0.191991 -0.318531) WARNING: Triclinic box skew is large (src/domain.cpp:195) triclinic box = (0 0 0) to (10.462 9.13454 10.1183) with tilt (-5.28488 -0.191991 -0.318531) WARNING: Triclinic box skew is large (src/domain.cpp:195) triclinic box = (0 0 0) to (10.462 9.13454 10.1183) with tilt (-5.28488 -0.191991 -0.318531) Reading potential file ./SM_184524061456_000-files/b'Si.tersoff.modc' with DATE: 2016-11-09 WARNING: No fixes defined, atoms won't move (src/verlet.cpp:55) Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 4000, page size: 100000 master list distance cutoff = 5.20569 ghost atom cutoff = 5.20569 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair tersoff/mod/c, perpetual attributes: full, newton on pair build: full/nsq stencil: none bin: none Setting up Verlet run ... Unit style : metal Current step : 0 Time step : 0.001 Per MPI rank memory allocation (min/avg/max) = 4.945 | 4.945 | 4.945 Mbytes v_pe_metal -219.02986 Loop time of 9.53674e-07 on 1 procs for 0 steps with 64 atoms 0.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0 | 0 | 0 | 0.0 | 0.00 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0 | 0 | 0 | 0.0 | 0.00 Output | 0 | 0 | 0 | 0.0 | 0.00 Modify | 0 | 0 | 0 | 0.0 | 0.00 Other | | 9.537e-07 | | |100.00 Nlocal: 64 ave 64 max 64 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 616 ave 616 max 616 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 2312 ave 2312 max 2312 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 2312 Ave neighs/atom = 36.125 Neighbor list builds = 0 Dangerous builds = 0 Total wall time: 0:00:00