RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
[ 2.26415199e-62 -1.56907759e-09 -4.45294143e-26] [-2.26415177e-62 1.56907759e-09 4.45293992e-26] [ 3.23347416e-32 -1.56907759e-09 -4.45293992e-26] [ 3.23347416e-32 1.56907759e-09 4.45293992e-26] [ 2.26415199e-62 -1.56907759e-09 -4.45294143e-26] [-2.26415174e-62 1.56907759e-09 4.45293974e-26] [ 2.26415188e-62 -1.56907759e-09 -4.45294068e-26] [-1.95042008e-09 -9.29621307e-50 -3.03485105e-33] [ 1.95042008e-09 -8.32330531e-63 -1.76810370e-46] [-1.95042008e-09 -1.50360322e-32 1.76383657e-46] [ 1.95042008e-09 3.00720644e-32 -1.75956944e-46] [-1.95042008e-09 -4.60426708e-49 -1.50311365e-32] [ 1.95042008e-09 -3.39132675e-49 -1.10713594e-32] [-1.95042008e-09 8.32330531e-63 1.76810370e-46] [ 1.95042008e-09 -8.32330531e-63 -1.76810370e-46]]stress = [ 3.30845909e-11 4.70060397e-11 -1.08076056e-10 2.53206241e-26 1.85723597e-47 -8.37341404e-64]energy per atom = -4.196185044943975===============================================Parameter sets [0] relaxed to duplicate structures, attempting to write only one of them.
output/pipeline.stderr:
-----------------------
File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 202, in <module> (libproto,shortname)=aflow.get_library_prototype_label_and_shortname(RELAX_POSCAR_PATH.format(i),shortnames) File "/work2/08773/bwaters/stampede2/bwaters/job-974685dc-36be-4c20-bcc9-244550224d8e-007-8e98302e-bacc-4cbb-a2cb-1522e9d9a873/TE_099421378389_000-and-SM_578912636995_000-1683308952/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 382, in get_library_prototype_label_and_shortname comparison_results = self.compare_to_prototypes(poscar_file) File "/work2/08773/bwaters/stampede2/bwaters/job-974685dc-36be-4c20-bcc9-244550224d8e-007-8e98302e-bacc-4cbb-a2cb-1522e9d9a873/TE_099421378389_000-and-SM_578912636995_000-1683308952/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 339, in compare_to_prototypes output = self.aflow_command([ File "/work2/08773/bwaters/stampede2/bwaters/job-974685dc-36be-4c20-bcc9-244550224d8e-007-8e98302e-bacc-4cbb-a2cb-1522e9d9a873/TE_099421378389_000-and-SM_578912636995_000-1683308952/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/usr/lib/python3.8/subprocess.py", line 858, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1639, in _execute_child self.pid = _posixsubprocess.fork_exec(OSError: [Errno 12] Cannot allocate memoryCommand exited with non-zero status 1{"realtime":137.71,"usertime":161.68,"systime":139.02,"memmax":172396,"memavg":0}
output/kim.log:
---------------
2023-05-08:15:34:08CDT * 1 * information * 0x39ca540 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Collections'.2023-05-08:15:34:08CDT * 2 * information * 0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x39ca540'.2023-05-08:15:34:08CDT * 3 * information * 0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:15:34:08CDT * 0 * information * 0x39ca540 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-08:15:34:08CDT * 0 * information * 0x39af540 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-08:15:34:08CDT * 1 * information * 0x39af540 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x39ca540_Collections'.2023-05-08:15:34:08CDT * 2 * information * 0x39ca540_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x39af540'.2023-05-08:15:34:08CDT * 3 * information * 0x39ca540_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:15:34:08CDT * 1 * information * 0x39ca540 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-08:15:34:08CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x39ca540'.2023-05-08:15:34:08CDT * 3 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:15:34:08CDT * 0 * information * 0x39ca540 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-08:15:34:08CDT * 0 * information * 0x39af540 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-08:15:34:08CDT * 1 * information * 0x39af540 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x39ca540_Collections'.2023-05-08:15:34:08CDT * 2 * information * 0x39ca540_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x39af540'.2023-05-08:15:34:08CDT * 3 * information * 0x39ca540_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:15:34:08CDT * 1 * information * 0x39ca540 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-08:15:34:08CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x39ca540'.2023-05-08:15:34:08CDT * 3 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:15:35:29CDT * 0 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.