# Variables that can be adjusted by kim-lammps-preprocessor to switch unit sets for # Simulator Models variable _u_distance equal 1.0 variable _u_energy equal 1.0 variable _u_mass equal 1.0 variable _u_time equal 1.0 variable _u_pressure equal 1.0 variable _u_temperature equal 1.0 # This line may be swapped out by kim-lammps-preprocessor if running against a Simulator # Model whose atom_style is not 'atomic' atom_style atomic # periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.371355056762696*${_u_distance} variable latticeconst_converted equal 5.371355056762696*1 lattice bcc ${latticeconst_converted} lattice bcc 5.3713550567627 Lattice spacing in x,y,z = 5.37136 5.37136 5.37136 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (53.7136 53.7136 53.7136) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms create_atoms CPU = 0.000302076 secs variable mass_converted equal 132.90545*${_u_mass} variable mass_converted equal 132.90545*1 # specify which KIM Model to use pair_style kim LJ_ElliottAkerson_2015_Universal__MO_959249795837_003 pair_coeff * * Cs mass 1 ${mass_converted} mass 1 132.90545 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 154971.40949241 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 154971.40949241/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 154971.40949241/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 154971.40949241/(1*1*${_u_distance}) variable V0_metal equal 154971.40949241/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 154971.40949241*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 154971.40949241 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 20.5307 ghost atom cutoff = 20.5307 binsize = 10.2653, bins = 6 6 6 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 20.5307 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.04 | 7.04 | 7.04 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -6562.3055 -6562.3055 -6632.885 -6632.885 273.15 273.15 154971.41 154971.41 486.45974 486.45974 1000 -6543.8841 -6543.8841 -6609.8384 -6609.8384 255.24985 255.24985 155732.36 155732.36 68.98672 68.98672 Loop time of 37.4113 on 1 procs for 1000 steps with 2000 atoms Performance: 2.309 ns/day, 10.392 hours/ns, 26.730 timesteps/s 25.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 36.441 | 36.441 | 36.441 | 0.0 | 97.41 Neigh | 0.2501 | 0.2501 | 0.2501 | 0.0 | 0.67 Comm | 0.24654 | 0.24654 | 0.24654 | 0.0 | 0.66 Output | 4.4107e-05 | 4.4107e-05 | 4.4107e-05 | 0.0 | 0.00 Modify | 0.37853 | 0.37853 | 0.37853 | 0.0 | 1.01 Other | | 0.09548 | | | 0.26 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 947888 ave 947888 max 947888 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 947888 Ave neighs/atom = 473.944 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.044 | 7.044 | 7.044 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -6543.8841 -6543.8841 -6609.8384 -6609.8384 255.24985 255.24985 155732.36 155732.36 68.98672 68.98672 2000 -6565.1963 -6565.1963 -6636.5147 -6636.5147 276.00976 276.00976 155483.38 155483.38 -83.199231 -83.199231 Loop time of 40.5163 on 1 procs for 1000 steps with 2000 atoms Performance: 2.132 ns/day, 11.255 hours/ns, 24.681 timesteps/s 23.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 39.517 | 39.517 | 39.517 | 0.0 | 97.53 Neigh | 0.22728 | 0.22728 | 0.22728 | 0.0 | 0.56 Comm | 0.28828 | 0.28828 | 0.28828 | 0.0 | 0.71 Output | 3.7909e-05 | 3.7909e-05 | 3.7909e-05 | 0.0 | 0.00 Modify | 0.42872 | 0.42872 | 0.42872 | 0.0 | 1.06 Other | | 0.05516 | | | 0.14 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8767 ave 8767 max 8767 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 949210 ave 949210 max 949210 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 949210 Ave neighs/atom = 474.605 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.044 | 7.044 | 7.044 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -6565.1963 -6565.1963 -6636.5147 -6636.5147 276.00976 276.00976 155483.38 155483.38 -83.199231 -83.199231 3000 -6607.9401 -6607.9401 -6680.751 -6680.751 281.78543 281.78543 154976.55 154976.55 -15.789613 -15.789613 Loop time of 38.0222 on 1 procs for 1000 steps with 2000 atoms Performance: 2.272 ns/day, 10.562 hours/ns, 26.300 timesteps/s 24.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.06 | 37.06 | 37.06 | 0.0 | 97.47 Neigh | 0.24489 | 0.24489 | 0.24489 | 0.0 | 0.64 Comm | 0.2563 | 0.2563 | 0.2563 | 0.0 | 0.67 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.44548 | 0.44548 | 0.44548 | 0.0 | 1.17 Other | | 0.01551 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8934 ave 8934 max 8934 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 944110 ave 944110 max 944110 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 944110 Ave neighs/atom = 472.055 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -6607.9401 -6607.9401 -6680.751 -6680.751 281.78543 281.78543 154976.55 154976.55 -15.789613 -15.789613 4000 -6612.6997 -6612.6997 -6684.7949 -6684.7949 279.01612 279.01612 154810.53 154810.53 434.12488 434.12488 Loop time of 36.5576 on 1 procs for 1000 steps with 2000 atoms Performance: 2.363 ns/day, 10.155 hours/ns, 27.354 timesteps/s 25.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 35.6 | 35.6 | 35.6 | 0.0 | 97.38 Neigh | 0.30573 | 0.30573 | 0.30573 | 0.0 | 0.84 Comm | 0.22766 | 0.22766 | 0.22766 | 0.0 | 0.62 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.3088 | 0.3088 | 0.3088 | 0.0 | 0.84 Other | | 0.1152 | | | 0.32 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8974 ave 8974 max 8974 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 943538 ave 943538 max 943538 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 943538 Ave neighs/atom = 471.769 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -6612.6997 -6612.6997 -6684.7949 -6684.7949 279.01612 279.01612 154810.53 154810.53 434.12488 434.12488 5000 -6626.6909 -6626.6909 -6698.335 -6698.335 277.27006 277.27006 154840.98 154840.98 -278.69303 -278.69303 Loop time of 38.2877 on 1 procs for 1000 steps with 2000 atoms Performance: 2.257 ns/day, 10.635 hours/ns, 26.118 timesteps/s 24.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.524 | 37.524 | 37.524 | 0.0 | 98.00 Neigh | 0.15288 | 0.15288 | 0.15288 | 0.0 | 0.40 Comm | 0.25105 | 0.25105 | 0.25105 | 0.0 | 0.66 Output | 3.0994e-05 | 3.0994e-05 | 3.0994e-05 | 0.0 | 0.00 Modify | 0.31488 | 0.31488 | 0.31488 | 0.0 | 0.82 Other | | 0.04523 | | | 0.12 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8994 ave 8994 max 8994 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 943146 ave 943146 max 943146 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 943146 Ave neighs/atom = 471.573 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.565217820662, Press = 10.7901798649386 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -6626.6909 -6626.6909 -6698.335 -6698.335 277.27006 277.27006 154840.98 154840.98 -278.69303 -278.69303 6000 -6627.7071 -6627.7071 -6695.4799 -6695.4799 262.28767 262.28767 154841.83 154841.83 -100.67711 -100.67711 Loop time of 37.0964 on 1 procs for 1000 steps with 2000 atoms Performance: 2.329 ns/day, 10.305 hours/ns, 26.957 timesteps/s 25.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 36.391 | 36.391 | 36.391 | 0.0 | 98.10 Neigh | 0.1961 | 0.1961 | 0.1961 | 0.0 | 0.53 Comm | 0.17796 | 0.17796 | 0.17796 | 0.0 | 0.48 Output | 3.0041e-05 | 3.0041e-05 | 3.0041e-05 | 0.0 | 0.00 Modify | 0.24073 | 0.24073 | 0.24073 | 0.0 | 0.65 Other | | 0.09076 | | | 0.24 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 9043 ave 9043 max 9043 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 946126 ave 946126 max 946126 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 946126 Ave neighs/atom = 473.063 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 270.99614067328, Press = -0.684214019715369 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -6627.7071 -6627.7071 -6695.4799 -6695.4799 262.28767 262.28767 154841.83 154841.83 -100.67711 -100.67711 7000 -6628.8063 -6628.8063 -6695.8001 -6695.8001 259.27297 259.27297 154780.05 154780.05 103.76297 103.76297 Loop time of 35.5766 on 1 procs for 1000 steps with 2000 atoms Performance: 2.429 ns/day, 9.882 hours/ns, 28.108 timesteps/s 26.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 34.826 | 34.826 | 34.826 | 0.0 | 97.89 Neigh | 0.16662 | 0.16662 | 0.16662 | 0.0 | 0.47 Comm | 0.29882 | 0.29882 | 0.29882 | 0.0 | 0.84 Output | 3.0994e-05 | 3.0994e-05 | 3.0994e-05 | 0.0 | 0.00 Modify | 0.24061 | 0.24061 | 0.24061 | 0.0 | 0.68 Other | | 0.04493 | | | 0.13 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 9026 ave 9026 max 9026 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 945744 ave 945744 max 945744 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 945744 Ave neighs/atom = 472.872 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.381687278953, Press = 0.853511658478887 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -6628.8063 -6628.8063 -6695.8001 -6695.8001 259.27297 259.27297 154780.05 154780.05 103.76297 103.76297 8000 -6630.9675 -6630.9675 -6701.12 -6701.12 271.49773 271.49773 154847.05 154847.05 -295.8846 -295.8846 Loop time of 36.5533 on 1 procs for 1000 steps with 2000 atoms Performance: 2.364 ns/day, 10.154 hours/ns, 27.357 timesteps/s 26.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 35.757 | 35.757 | 35.757 | 0.0 | 97.82 Neigh | 0.206 | 0.206 | 0.206 | 0.0 | 0.56 Comm | 0.2688 | 0.2688 | 0.2688 | 0.0 | 0.74 Output | 2.9087e-05 | 2.9087e-05 | 2.9087e-05 | 0.0 | 0.00 Modify | 0.2754 | 0.2754 | 0.2754 | 0.0 | 0.75 Other | | 0.04601 | | | 0.13 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 9025 ave 9025 max 9025 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 944630 ave 944630 max 944630 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 944630 Ave neighs/atom = 472.315 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.839477520716, Press = 0.487700194335397 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -6630.9675 -6630.9675 -6701.12 -6701.12 271.49773 271.49773 154847.05 154847.05 -295.8846 -295.8846 9000 -6629.0737 -6629.0737 -6700.8372 -6700.8372 277.73225 277.73225 154792.41 154792.41 -168.37544 -168.37544 Loop time of 39.0971 on 1 procs for 1000 steps with 2000 atoms Performance: 2.210 ns/day, 10.860 hours/ns, 25.577 timesteps/s 24.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.507 | 38.507 | 38.507 | 0.0 | 98.49 Neigh | 0.08134 | 0.08134 | 0.08134 | 0.0 | 0.21 Comm | 0.21952 | 0.21952 | 0.21952 | 0.0 | 0.56 Output | 2.9087e-05 | 2.9087e-05 | 2.9087e-05 | 0.0 | 0.00 Modify | 0.27209 | 0.27209 | 0.27209 | 0.0 | 0.70 Other | | 0.01692 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 9019 ave 9019 max 9019 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 945454 ave 945454 max 945454 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 945454 Ave neighs/atom = 472.727 Neighbor list builds = 1 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.941452562739, Press = -0.965215289502344 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -6629.0737 -6629.0737 -6700.8372 -6700.8372 277.73225 277.73225 154792.41 154792.41 -168.37544 -168.37544 10000 -6638.0801 -6638.0801 -6707.7995 -6707.7995 269.82153 269.82153 154688.5 154688.5 -219.36429 -219.36429 Loop time of 39.2983 on 1 procs for 1000 steps with 2000 atoms Performance: 2.199 ns/day, 10.916 hours/ns, 25.446 timesteps/s 24.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.539 | 38.539 | 38.539 | 0.0 | 98.07 Neigh | 0.18415 | 0.18415 | 0.18415 | 0.0 | 0.47 Comm | 0.18764 | 0.18764 | 0.18764 | 0.0 | 0.48 Output | 5.9843e-05 | 5.9843e-05 | 5.9843e-05 | 0.0 | 0.00 Modify | 0.31143 | 0.31143 | 0.31143 | 0.0 | 0.79 Other | | 0.07559 | | | 0.19 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 9028 ave 9028 max 9028 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 946856 ave 946856 max 946856 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 946856 Ave neighs/atom = 473.428 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.260529760405, Press = -2.18439048345406 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -6638.0801 -6638.0801 -6707.7995 -6707.7995 269.82153 269.82153 154688.5 154688.5 -219.36429 -219.36429 11000 -6637.7394 -6637.7394 -6709.7176 -6709.7176 278.56309 278.56309 154542.88 154542.88 306.75145 306.75145 Loop time of 37.3117 on 1 procs for 1000 steps with 2000 atoms Performance: 2.316 ns/day, 10.364 hours/ns, 26.801 timesteps/s 24.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 36.369 | 36.369 | 36.369 | 0.0 | 97.47 Neigh | 0.16327 | 0.16327 | 0.16327 | 0.0 | 0.44 Comm | 0.30333 | 0.30333 | 0.30333 | 0.0 | 0.81 Output | 2.9087e-05 | 2.9087e-05 | 2.9087e-05 | 0.0 | 0.00 Modify | 0.421 | 0.421 | 0.421 | 0.0 | 1.13 Other | | 0.05533 | | | 0.15 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 9029 ave 9029 max 9029 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 945370 ave 945370 max 945370 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 945370 Ave neighs/atom = 472.685 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.278826672951, Press = -0.704324830009225 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -6637.7394 -6637.7394 -6709.7176 -6709.7176 278.56309 278.56309 154542.88 154542.88 306.75145 306.75145 12000 -6637.5028 -6637.5028 -6709.1632 -6709.1632 277.33294 277.33294 154732.05 154732.05 -383.76451 -383.76451 Loop time of 36.3247 on 1 procs for 1000 steps with 2000 atoms Performance: 2.379 ns/day, 10.090 hours/ns, 27.529 timesteps/s 25.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 35.546 | 35.546 | 35.546 | 0.0 | 97.86 Neigh | 0.061559 | 0.061559 | 0.061559 | 0.0 | 0.17 Comm | 0.26794 | 0.26794 | 0.26794 | 0.0 | 0.74 Output | 2.9802e-05 | 2.9802e-05 | 2.9802e-05 | 0.0 | 0.00 Modify | 0.34295 | 0.34295 | 0.34295 | 0.0 | 0.94 Other | | 0.1061 | | | 0.29 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 9033 ave 9033 max 9033 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 945934 ave 945934 max 945934 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 945934 Ave neighs/atom = 472.967 Neighbor list builds = 1 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.228276973882, Press = 0.4829253100969 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -6637.5028 -6637.5028 -6709.1632 -6709.1632 277.33294 277.33294 154732.05 154732.05 -383.76451 -383.76451 13000 -6641.3877 -6641.3877 -6712.08 -6712.08 273.5862 273.5862 154508.7 154508.7 283.98646 283.98646 Loop time of 37.7472 on 1 procs for 1000 steps with 2000 atoms Performance: 2.289 ns/day, 10.485 hours/ns, 26.492 timesteps/s 24.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.062 | 37.062 | 37.062 | 0.0 | 98.18 Neigh | 0.14219 | 0.14219 | 0.14219 | 0.0 | 0.38 Comm | 0.14598 | 0.14598 | 0.14598 | 0.0 | 0.39 Output | 2.9802e-05 | 2.9802e-05 | 2.9802e-05 | 0.0 | 0.00 Modify | 0.38128 | 0.38128 | 0.38128 | 0.0 | 1.01 Other | | 0.01587 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 9033 ave 9033 max 9033 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 945876 ave 945876 max 945876 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 945876 Ave neighs/atom = 472.938 Neighbor list builds = 1 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.389133901704, Press = -1.20327930323005 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -6641.3877 -6641.3877 -6712.08 -6712.08 273.5862 273.5862 154508.7 154508.7 283.98646 283.98646 14000 -6645.4985 -6645.4985 -6714.43 -6714.43 266.77188 266.77188 154548.57 154548.57 -49.588356 -49.588356 Loop time of 38.9422 on 1 procs for 1000 steps with 2000 atoms Performance: 2.219 ns/day, 10.817 hours/ns, 25.679 timesteps/s 24.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.277 | 38.277 | 38.277 | 0.0 | 98.29 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13682 | 0.13682 | 0.13682 | 0.0 | 0.35 Output | 3.0041e-05 | 3.0041e-05 | 3.0041e-05 | 0.0 | 0.00 Modify | 0.48273 | 0.48273 | 0.48273 | 0.0 | 1.24 Other | | 0.04553 | | | 0.12 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 9038 ave 9038 max 9038 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 945854 ave 945854 max 945854 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 945854 Ave neighs/atom = 472.927 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.380767721263, Press = 1.02467261388513 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.046 | 7.046 | 7.046 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -6645.4985 -6645.4985 -6714.43 -6714.43 266.77188 266.77188 154548.57 154548.57 -49.588356 -49.588356 15000 -6642.0269 -6642.0269 -6712.1094 -6712.1094 271.22632 271.22632 154811.86 154811.86 -833.8622 -833.8622 Loop time of 36.7682 on 1 procs for 1000 steps with 2000 atoms Performance: 2.350 ns/day, 10.213 hours/ns, 27.197 timesteps/s 25.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 35.856 | 35.856 | 35.856 | 0.0 | 97.52 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.47636 | 0.47636 | 0.47636 | 0.0 | 1.30 Output | 2.9087e-05 | 2.9087e-05 | 2.9087e-05 | 0.0 | 0.00 Modify | 0.3908 | 0.3908 | 0.3908 | 0.0 | 1.06 Other | | 0.045 | | | 0.12 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 9040 ave 9040 max 9040 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 945854 ave 945854 max 945854 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 945854 Ave neighs/atom = 472.927 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 154677.451242488 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0