# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.034461110830307*${_u_distance} variable latticeconst_converted equal 5.034461110830307*1 lattice bcc ${latticeconst_converted} lattice bcc 5.03446111083031 Lattice spacing in x,y,z = 5.03446 5.03446 5.03446 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (50.3446 50.3446 50.3446) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms create_atoms CPU = 0.000673056 secs variable mass_converted equal 137.327*${_u_mass} variable mass_converted equal 137.327*1 kim_interactions Ba #=== BEGIN kim_interactions ================================== pair_style kim Morse_Shifted_GirifalcoWeizer_1959MedCutoff_Ba__MO_229241184339_004 pair_coeff * * Ba #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 137.327 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 127602.437759586 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 127602.437759586/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 127602.437759586/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 127602.437759586/(1*1*${_u_distance}) variable V0_metal equal 127602.437759586/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 127602.437759586*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 127602.437759586 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 18.9421 ghost atom cutoff = 18.9421 binsize = 9.47105, bins = 6 6 6 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 18.9421 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.041 | 7.041 | 7.041 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -3417.3545 -3417.3545 -3487.934 -3487.934 273.15 273.15 127602.44 127602.44 590.79674 590.79674 1000 -3333.8009 -3333.8009 -3409.6468 -3409.6468 293.53144 293.53144 130862.35 130862.35 -198.74677 -198.74677 Loop time of 42.1647 on 1 procs for 1000 steps with 2000 atoms Performance: 2.049 ns/day, 11.712 hours/ns, 23.717 timesteps/s 72.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 41.719 | 41.719 | 41.719 | 0.0 | 98.94 Neigh | 0.16047 | 0.16047 | 0.16047 | 0.0 | 0.38 Comm | 0.098582 | 0.098582 | 0.098582 | 0.0 | 0.23 Output | 5.4121e-05 | 5.4121e-05 | 5.4121e-05 | 0.0 | 0.00 Modify | 0.16815 | 0.16815 | 0.16815 | 0.0 | 0.40 Other | | 0.01808 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 870772 ave 870772 max 870772 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 870772 Ave neighs/atom = 435.386 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -3333.8009 -3333.8009 -3409.6468 -3409.6468 293.53144 293.53144 130862.35 130862.35 -198.74677 -198.74677 2000 -3340.1653 -3340.1653 -3410.9248 -3410.9248 273.84673 273.84673 130290.52 130290.52 130.02481 130.02481 Loop time of 45.8302 on 1 procs for 1000 steps with 2000 atoms Performance: 1.885 ns/day, 12.731 hours/ns, 21.820 timesteps/s 66.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 45.295 | 45.295 | 45.295 | 0.0 | 98.83 Neigh | 0.20542 | 0.20542 | 0.20542 | 0.0 | 0.45 Comm | 0.13335 | 0.13335 | 0.13335 | 0.0 | 0.29 Output | 4.5061e-05 | 4.5061e-05 | 4.5061e-05 | 0.0 | 0.00 Modify | 0.17699 | 0.17699 | 0.17699 | 0.0 | 0.39 Other | | 0.01924 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 871984 ave 871984 max 871984 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 871984 Ave neighs/atom = 435.992 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -3340.1653 -3340.1653 -3410.9248 -3410.9248 273.84673 273.84673 130290.52 130290.52 130.02481 130.02481 3000 -3342.7959 -3342.7959 -3415.3068 -3415.3068 280.62478 280.62478 130478.3 130478.3 -72.013495 -72.013495 Loop time of 46.9161 on 1 procs for 1000 steps with 2000 atoms Performance: 1.842 ns/day, 13.032 hours/ns, 21.315 timesteps/s 65.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 46.391 | 46.391 | 46.391 | 0.0 | 98.88 Neigh | 0.17455 | 0.17455 | 0.17455 | 0.0 | 0.37 Comm | 0.11193 | 0.11193 | 0.11193 | 0.0 | 0.24 Output | 3.6955e-05 | 3.6955e-05 | 3.6955e-05 | 0.0 | 0.00 Modify | 0.22058 | 0.22058 | 0.22058 | 0.0 | 0.47 Other | | 0.01831 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 867942 ave 867942 max 867942 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 867942 Ave neighs/atom = 433.971 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -3342.7959 -3342.7959 -3415.3068 -3415.3068 280.62478 280.62478 130478.3 130478.3 -72.013495 -72.013495 4000 -3349.0074 -3349.0074 -3419.3416 -3419.3416 272.20037 272.20037 130270.38 130270.38 -20.022609 -20.022609 Loop time of 50.5536 on 1 procs for 1000 steps with 2000 atoms Performance: 1.709 ns/day, 14.043 hours/ns, 19.781 timesteps/s 61.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 50.118 | 50.118 | 50.118 | 0.0 | 99.14 Neigh | 0.19946 | 0.19946 | 0.19946 | 0.0 | 0.39 Comm | 0.073585 | 0.073585 | 0.073585 | 0.0 | 0.15 Output | 5.1022e-05 | 5.1022e-05 | 5.1022e-05 | 0.0 | 0.00 Modify | 0.13165 | 0.13165 | 0.13165 | 0.0 | 0.26 Other | | 0.03127 | | | 0.06 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 868586 ave 868586 max 868586 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 868586 Ave neighs/atom = 434.293 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -3349.0074 -3349.0074 -3419.3416 -3419.3416 272.20037 272.20037 130270.38 130270.38 -20.022609 -20.022609 5000 -3347.5239 -3347.5239 -3418.272 -3418.272 273.80252 273.80252 130180.89 130180.89 58.549202 58.549202 Loop time of 44.5466 on 1 procs for 1000 steps with 2000 atoms Performance: 1.940 ns/day, 12.374 hours/ns, 22.448 timesteps/s 68.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 44.165 | 44.165 | 44.165 | 0.0 | 99.14 Neigh | 0.10923 | 0.10923 | 0.10923 | 0.0 | 0.25 Comm | 0.095562 | 0.095562 | 0.095562 | 0.0 | 0.21 Output | 3.1948e-05 | 3.1948e-05 | 3.1948e-05 | 0.0 | 0.00 Modify | 0.15932 | 0.15932 | 0.15932 | 0.0 | 0.36 Other | | 0.01783 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 866684 ave 866684 max 866684 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 866684 Ave neighs/atom = 433.342 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.717011839105, Press = 63.8907500432456 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -3347.5239 -3347.5239 -3418.272 -3418.272 273.80252 273.80252 130180.89 130180.89 58.549202 58.549202 6000 -3345.8148 -3345.8148 -3416.0079 -3416.0079 271.6548 271.6548 130612.53 130612.53 -201.24152 -201.24152 Loop time of 46.1507 on 1 procs for 1000 steps with 2000 atoms Performance: 1.872 ns/day, 12.820 hours/ns, 21.668 timesteps/s 65.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 45.627 | 45.627 | 45.627 | 0.0 | 98.87 Neigh | 0.20569 | 0.20569 | 0.20569 | 0.0 | 0.45 Comm | 0.085527 | 0.085527 | 0.085527 | 0.0 | 0.19 Output | 4.0054e-05 | 4.0054e-05 | 4.0054e-05 | 0.0 | 0.00 Modify | 0.21458 | 0.21458 | 0.21458 | 0.0 | 0.46 Other | | 0.01764 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 870734 ave 870734 max 870734 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 870734 Ave neighs/atom = 435.367 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.320291194519, Press = 0.983836583665626 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -3345.8148 -3345.8148 -3416.0079 -3416.0079 271.6548 271.6548 130612.53 130612.53 -201.24152 -201.24152 7000 -3342.3987 -3342.3987 -3415.6978 -3415.6978 283.67478 283.67478 129860.46 129860.46 359.77877 359.77877 Loop time of 54.0235 on 1 procs for 1000 steps with 2000 atoms Performance: 1.599 ns/day, 15.007 hours/ns, 18.510 timesteps/s 57.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 53.327 | 53.327 | 53.327 | 0.0 | 98.71 Neigh | 0.26086 | 0.26086 | 0.26086 | 0.0 | 0.48 Comm | 0.1674 | 0.1674 | 0.1674 | 0.0 | 0.31 Output | 3.9101e-05 | 3.9101e-05 | 3.9101e-05 | 0.0 | 0.00 Modify | 0.23656 | 0.23656 | 0.23656 | 0.0 | 0.44 Other | | 0.03117 | | | 0.06 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 867954 ave 867954 max 867954 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 867954 Ave neighs/atom = 433.977 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.963117488779, Press = 2.51458549534652 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -3342.3987 -3342.3987 -3415.6978 -3415.6978 283.67478 283.67478 129860.46 129860.46 359.77877 359.77877 8000 -3344.2976 -3344.2976 -3414.5991 -3414.5991 272.07398 272.07398 130827.19 130827.19 -323.14721 -323.14721 Loop time of 43.2914 on 1 procs for 1000 steps with 2000 atoms Performance: 1.996 ns/day, 12.025 hours/ns, 23.099 timesteps/s 69.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.743 | 42.743 | 42.743 | 0.0 | 98.73 Neigh | 0.25448 | 0.25448 | 0.25448 | 0.0 | 0.59 Comm | 0.10413 | 0.10413 | 0.10413 | 0.0 | 0.24 Output | 3.9101e-05 | 3.9101e-05 | 3.9101e-05 | 0.0 | 0.00 Modify | 0.17198 | 0.17198 | 0.17198 | 0.0 | 0.40 Other | | 0.01803 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 871680 ave 871680 max 871680 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 871680 Ave neighs/atom = 435.84 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.475142691257, Press = 2.11070007051179 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -3344.2976 -3344.2976 -3414.5991 -3414.5991 272.07398 272.07398 130827.19 130827.19 -323.14721 -323.14721 9000 -3341.7783 -3341.7783 -3412.9619 -3412.9619 275.48803 275.48803 130198.77 130198.77 151.09025 151.09025 Loop time of 48.9126 on 1 procs for 1000 steps with 2000 atoms Performance: 1.766 ns/day, 13.587 hours/ns, 20.445 timesteps/s 62.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 48.409 | 48.409 | 48.409 | 0.0 | 98.97 Neigh | 0.15608 | 0.15608 | 0.15608 | 0.0 | 0.32 Comm | 0.10579 | 0.10579 | 0.10579 | 0.0 | 0.22 Output | 4.3154e-05 | 4.3154e-05 | 4.3154e-05 | 0.0 | 0.00 Modify | 0.18419 | 0.18419 | 0.18419 | 0.0 | 0.38 Other | | 0.05717 | | | 0.12 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 867966 ave 867966 max 867966 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 867966 Ave neighs/atom = 433.983 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.72966962686, Press = -0.0380528664388095 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -3341.7783 -3341.7783 -3412.9619 -3412.9619 275.48803 275.48803 130198.77 130198.77 151.09025 151.09025 10000 -3344.3722 -3344.3722 -3414.6941 -3414.6941 272.15308 272.15308 130444.25 130444.25 -69.078301 -69.078301 Loop time of 43.0501 on 1 procs for 1000 steps with 2000 atoms Performance: 2.007 ns/day, 11.958 hours/ns, 23.229 timesteps/s 71.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.51 | 42.51 | 42.51 | 0.0 | 98.74 Neigh | 0.21725 | 0.21725 | 0.21725 | 0.0 | 0.50 Comm | 0.13168 | 0.13168 | 0.13168 | 0.0 | 0.31 Output | 7.6056e-05 | 7.6056e-05 | 7.6056e-05 | 0.0 | 0.00 Modify | 0.17344 | 0.17344 | 0.17344 | 0.0 | 0.40 Other | | 0.01808 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 870272 ave 870272 max 870272 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 870272 Ave neighs/atom = 435.136 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.433103909855, Press = 2.22506086370616 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -3344.3722 -3344.3722 -3414.6941 -3414.6941 272.15308 272.15308 130444.25 130444.25 -69.078301 -69.078301 11000 -3344.4619 -3344.4619 -3415.2783 -3415.2783 274.06681 274.06681 130426.57 130426.57 -44.173579 -44.173579 Loop time of 48.612 on 1 procs for 1000 steps with 2000 atoms Performance: 1.777 ns/day, 13.503 hours/ns, 20.571 timesteps/s 63.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 48.139 | 48.139 | 48.139 | 0.0 | 99.03 Neigh | 0.14645 | 0.14645 | 0.14645 | 0.0 | 0.30 Comm | 0.11659 | 0.11659 | 0.11659 | 0.0 | 0.24 Output | 4.0054e-05 | 4.0054e-05 | 4.0054e-05 | 0.0 | 0.00 Modify | 0.17795 | 0.17795 | 0.17795 | 0.0 | 0.37 Other | | 0.03158 | | | 0.06 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 869816 ave 869816 max 869816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 869816 Ave neighs/atom = 434.908 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.169624560042, Press = -0.832902290074414 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -3344.4619 -3344.4619 -3415.2783 -3415.2783 274.06681 274.06681 130426.57 130426.57 -44.173579 -44.173579 12000 -3343.3779 -3343.3779 -3415.8806 -3415.8806 280.59279 280.59279 130200.1 130200.1 101.00036 101.00036 Loop time of 44.116 on 1 procs for 1000 steps with 2000 atoms Performance: 1.958 ns/day, 12.254 hours/ns, 22.668 timesteps/s 69.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 43.571 | 43.571 | 43.571 | 0.0 | 98.76 Neigh | 0.19906 | 0.19906 | 0.19906 | 0.0 | 0.45 Comm | 0.13765 | 0.13765 | 0.13765 | 0.0 | 0.31 Output | 4.1008e-05 | 4.1008e-05 | 4.1008e-05 | 0.0 | 0.00 Modify | 0.18978 | 0.18978 | 0.18978 | 0.0 | 0.43 Other | | 0.01894 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 869930 ave 869930 max 869930 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 869930 Ave neighs/atom = 434.965 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.837386332315, Press = 1.99802622160813 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -3343.3779 -3343.3779 -3415.8806 -3415.8806 280.59279 280.59279 130200.1 130200.1 101.00036 101.00036 13000 -3345.2583 -3345.2583 -3415.7075 -3415.7075 272.64586 272.64586 130639.45 130639.45 -217.79497 -217.79497 Loop time of 52.6645 on 1 procs for 1000 steps with 2000 atoms Performance: 1.641 ns/day, 14.629 hours/ns, 18.988 timesteps/s 58.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 52.06 | 52.06 | 52.06 | 0.0 | 98.85 Neigh | 0.27158 | 0.27158 | 0.27158 | 0.0 | 0.52 Comm | 0.14372 | 0.14372 | 0.14372 | 0.0 | 0.27 Output | 3.9101e-05 | 3.9101e-05 | 3.9101e-05 | 0.0 | 0.00 Modify | 0.17056 | 0.17056 | 0.17056 | 0.0 | 0.32 Other | | 0.01842 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 870270 ave 870270 max 870270 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 870270 Ave neighs/atom = 435.135 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.971207781189, Press = -0.66237452571882 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -3345.2583 -3345.2583 -3415.7075 -3415.7075 272.64586 272.64586 130639.45 130639.45 -217.79497 -217.79497 14000 -3343.4427 -3343.4427 -3413.8491 -3413.8491 272.47994 272.47994 129777.78 129777.78 431.83068 431.83068 Loop time of 38.5684 on 1 procs for 1000 steps with 2000 atoms Performance: 2.240 ns/day, 10.713 hours/ns, 25.928 timesteps/s 80.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.17 | 38.17 | 38.17 | 0.0 | 98.97 Neigh | 0.1482 | 0.1482 | 0.1482 | 0.0 | 0.38 Comm | 0.090574 | 0.090574 | 0.090574 | 0.0 | 0.23 Output | 3.0041e-05 | 3.0041e-05 | 3.0041e-05 | 0.0 | 0.00 Modify | 0.12849 | 0.12849 | 0.12849 | 0.0 | 0.33 Other | | 0.03112 | | | 0.08 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 863720 ave 863720 max 863720 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 863720 Ave neighs/atom = 431.86 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.943547366287, Press = 1.61465853081245 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -3343.4427 -3343.4427 -3413.8491 -3413.8491 272.47994 272.47994 129777.78 129777.78 431.83068 431.83068 15000 -3342.344 -3342.344 -3414.4542 -3414.4542 279.07378 279.07378 130864.61 130864.61 -329.72655 -329.72655 Loop time of 35.5622 on 1 procs for 1000 steps with 2000 atoms Performance: 2.430 ns/day, 9.878 hours/ns, 28.120 timesteps/s 87.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 35.188 | 35.188 | 35.188 | 0.0 | 98.95 Neigh | 0.13275 | 0.13275 | 0.13275 | 0.0 | 0.37 Comm | 0.07518 | 0.07518 | 0.07518 | 0.0 | 0.21 Output | 2.8849e-05 | 2.8849e-05 | 2.8849e-05 | 0.0 | 0.00 Modify | 0.14818 | 0.14818 | 0.14818 | 0.0 | 0.42 Other | | 0.01819 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 872962 ave 872962 max 872962 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 872962 Ave neighs/atom = 436.481 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.890181072838, Press = 0.649254783038694 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.045 | 7.045 | 7.045 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -3342.344 -3342.344 -3414.4542 -3414.4542 279.07378 279.07378 130864.61 130864.61 -329.72655 -329.72655 16000 -3346.2739 -3346.2739 -3415.6526 -3415.6526 268.50249 268.50249 130033.61 130033.61 197.36065 197.36065 Loop time of 36.4883 on 1 procs for 1000 steps with 2000 atoms Performance: 2.368 ns/day, 10.136 hours/ns, 27.406 timesteps/s 83.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 36.115 | 36.115 | 36.115 | 0.0 | 98.98 Neigh | 0.14739 | 0.14739 | 0.14739 | 0.0 | 0.40 Comm | 0.077168 | 0.077168 | 0.077168 | 0.0 | 0.21 Output | 3.7909e-05 | 3.7909e-05 | 3.7909e-05 | 0.0 | 0.00 Modify | 0.13116 | 0.13116 | 0.13116 | 0.0 | 0.36 Other | | 0.01783 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8745 ave 8745 max 8745 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 866162 ave 866162 max 866162 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 866162 Ave neighs/atom = 433.081 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 130345.742571335 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0