AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "4a" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.0 0.0 0.0 ] ] } "reservoir-wyckoff-species" { "source-value" [ "Pt" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/anvil/scratch/x-bwaters/jobs/jobs/68225294-d8ce-4574-b216-c49234a986c2-007/TE_143190656999_001-and-MO_463728687265_001-1751747331/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/68225294-d8ce-4574-b216-c49234a986c2-007/TE_143190656999_001-and-MO_463728687265_001-1751747331/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/68225294-d8ce-4574-b216-c49234a986c2-007/TE_143190656999_001-and-MO_463728687265_001-1751747331/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/68225294-d8ce-4574-b216-c49234a986c2-007/TE_143190656999_001-and-MO_463728687265_001-1751747331/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/68225294-d8ce-4574-b216-c49234a986c2-007/TE_143190656999_001-and-MO_463728687265_001-1751747331/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/68225294-d8ce-4574-b216-c49234a986c2-007/TE_143190656999_001-and-MO_463728687265_001-1751747331/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/68225294-d8ce-4574-b216-c49234a986c2-007/TE_143190656999_001-and-MO_463728687265_001-1751747331/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/anvil/scratch/x-bwaters/jobs/jobs/68225294-d8ce-4574-b216-c49234a986c2-007/TE_143190656999_001-and-MO_463728687265_001-1751747331/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":120.00,"usertime":196.13,"systime":768.99,"memmax":718696,"memavg":0} output/kim.log: --------------- 2025-07-05:17:10:43EDT * 0 * information * 0x55bee9999d60_0x55bede8b5410 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bee9999d60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bee0b10800_0x55bedefe6b40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bee0b10800 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bed66b1e50_0x55bede9e40a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bed66b1e50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bee9249990_0x55bee13515f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bee9249990 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bed66da000_0x55bed6034a60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bed66da000 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bed5fa0580_0x55bed69341b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bed5fa0580 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bed5fca020_0x55bed66db060 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bed5fca020 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bed6749480_0x55bed5fa15f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bed6749480 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bedef57820_0x55bed6747de0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bedef57820 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bedef58aa0_0x55bed674a5d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:17:10:43EDT * 0 * information * 0x55bedef58aa0 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------