AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "4a" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.0 0.0 0.0 ] ] } "reservoir-wyckoff-species" { "source-value" [ "Pt" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/scratch.global/bwaters/jobs/7611dfd0-94ec-4bac-8a39-ba795a7ba616-007/TE_143190656999_001-and-MO_757342646688_001-1752097372/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/scratch.global/bwaters/jobs/7611dfd0-94ec-4bac-8a39-ba795a7ba616-007/TE_143190656999_001-and-MO_757342646688_001-1752097372/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/7611dfd0-94ec-4bac-8a39-ba795a7ba616-007/TE_143190656999_001-and-MO_757342646688_001-1752097372/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/scratch.global/bwaters/jobs/7611dfd0-94ec-4bac-8a39-ba795a7ba616-007/TE_143190656999_001-and-MO_757342646688_001-1752097372/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/7611dfd0-94ec-4bac-8a39-ba795a7ba616-007/TE_143190656999_001-and-MO_757342646688_001-1752097372/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/7611dfd0-94ec-4bac-8a39-ba795a7ba616-007/TE_143190656999_001-and-MO_757342646688_001-1752097372/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/7611dfd0-94ec-4bac-8a39-ba795a7ba616-007/TE_143190656999_001-and-MO_757342646688_001-1752097372/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/scratch.global/bwaters/jobs/7611dfd0-94ec-4bac-8a39-ba795a7ba616-007/TE_143190656999_001-and-MO_757342646688_001-1752097372/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":47.01,"usertime":61.19,"systime":279.16,"memmax":222856,"memavg":0} output/kim.log: --------------- 2025-07-09:17:05:41CDT * 0 * information * 0x55b7e7fda5a0_0x55b7e78314b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e7fda5a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e8f49f40_0x55b7e8d7d200 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e8f49f40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e8f6ef30_0x55b7e8f49020 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e8f6ef30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e93e4d30_0x55b7e8f6e280 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e93e4d30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e94322a0_0x55b7e93b7e10 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e94322a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e947f810_0x55b7e9405360 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e947f810 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e94ccd80_0x55b7e94528d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e94ccd80 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e951a2f0_0x55b7e949fe40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e951a2f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e9567860_0x55b7e94ed3b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e9567860 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e95b4dd0_0x55b7e953a920 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:17:05:41CDT * 0 * information * 0x55b7e95b4dd0 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------