AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "4a" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.0 0.0 0.0 ] ] } "reservoir-wyckoff-species" { "source-value" [ "Pt" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/anvil/scratch/x-bwaters/jobs/jobs/205d382b-517f-4a07-820f-ea4229b27c5a-007/TE_143190656999_001-and-MO_870117231765_001-1751993267/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/205d382b-517f-4a07-820f-ea4229b27c5a-007/TE_143190656999_001-and-MO_870117231765_001-1751993267/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/205d382b-517f-4a07-820f-ea4229b27c5a-007/TE_143190656999_001-and-MO_870117231765_001-1751993267/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/205d382b-517f-4a07-820f-ea4229b27c5a-007/TE_143190656999_001-and-MO_870117231765_001-1751993267/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/205d382b-517f-4a07-820f-ea4229b27c5a-007/TE_143190656999_001-and-MO_870117231765_001-1751993267/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/205d382b-517f-4a07-820f-ea4229b27c5a-007/TE_143190656999_001-and-MO_870117231765_001-1751993267/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/205d382b-517f-4a07-820f-ea4229b27c5a-007/TE_143190656999_001-and-MO_870117231765_001-1751993267/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/anvil/scratch/x-bwaters/jobs/jobs/205d382b-517f-4a07-820f-ea4229b27c5a-007/TE_143190656999_001-and-MO_870117231765_001-1751993267/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":105.12,"usertime":155.40,"systime":427.87,"memmax":6635032,"memavg":0} output/kim.log: --------------- 2025-07-08:13:17:39EDT * 0 * information * 0x558431b7ad70_0x558431b2ccb0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x558431b7ad70 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x55845c9b2a10_0x558444981070 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x55845c9b2a10 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x558445772270_0x55845c9b24c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x558445772270 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x5584457a5eb0_0x55844576deb0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x5584457a5eb0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x5584457ab290_0x558445773260 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x5584457ab290 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x5584457b06b0_0x5584457a6e60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x5584457b06b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x558448519f40_0x5584457ac280 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x558448519f40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x55844851f360_0x5584457b16a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x55844851f360 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x558448524780_0x55844851af30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x558448524780 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x558448508070_0x558448520350 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:13:17:39EDT * 0 * information * 0x558448508070 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------