AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "4a" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.0 0.0 0.0 ] ] } "reservoir-wyckoff-species" { "source-value" [ "Pt" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/anvil/scratch/x-bwaters/jobs/jobs/3dc90c08-9ca8-4013-87e4-065d41905b60-007/TE_143190656999_001-and-MO_946831081299_001-1751988924/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/3dc90c08-9ca8-4013-87e4-065d41905b60-007/TE_143190656999_001-and-MO_946831081299_001-1751988924/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/3dc90c08-9ca8-4013-87e4-065d41905b60-007/TE_143190656999_001-and-MO_946831081299_001-1751988924/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/3dc90c08-9ca8-4013-87e4-065d41905b60-007/TE_143190656999_001-and-MO_946831081299_001-1751988924/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/3dc90c08-9ca8-4013-87e4-065d41905b60-007/TE_143190656999_001-and-MO_946831081299_001-1751988924/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/3dc90c08-9ca8-4013-87e4-065d41905b60-007/TE_143190656999_001-and-MO_946831081299_001-1751988924/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/3dc90c08-9ca8-4013-87e4-065d41905b60-007/TE_143190656999_001-and-MO_946831081299_001-1751988924/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/anvil/scratch/x-bwaters/jobs/jobs/3dc90c08-9ca8-4013-87e4-065d41905b60-007/TE_143190656999_001-and-MO_946831081299_001-1751988924/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pt__TE_143190656999_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":38.79,"usertime":112.93,"systime":548.03,"memmax":528844,"memavg":0} output/kim.log: --------------- 2025-07-08:11:48:47EDT * 0 * information * 0x558bbf2f37f0_0x558bba13b4c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bbf2f37f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bb38b3010_0x558bbaac5290 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bb38b3010 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bba5e8ef0_0x558bbab69ed0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bba5e8ef0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bb3460d90_0x558bb38b4240 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bb3460d90 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bb8c8dd50_0x558bba5ea180 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bb8c8dd50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bb8c90470_0x558bb34618c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bb8c90470 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bba5e2f60_0x558bb8c8ef60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bba5e2f60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bba5e4e50_0x558bba5e1a30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bba5e4e50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bbfb47ba0_0x558bba5e4290 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bbfb47ba0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bbfb4a3e0_0x558bbfb46840 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:11:48:47EDT * 0 * information * 0x558bbfb4a3e0 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------