AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [2.79070559] Angstroms, c = [4.55720314] Angstroms, c/a = 1.632993 Total energy: -20.569636099513893 eV Cohesive energy: -5.142409024878473 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/20504fee-6b96-4fa3-a8a5-e926fe122f0a-007/TE_163040983284_005-and-MO_411020944797_001-1751736887/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/20504fee-6b96-4fa3-a8a5-e926fe122f0a-007/TE_163040983284_005-and-MO_411020944797_001-1751736887/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/20504fee-6b96-4fa3-a8a5-e926fe122f0a-007/TE_163040983284_005-and-MO_411020944797_001-1751736887/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/20504fee-6b96-4fa3-a8a5-e926fe122f0a-007/TE_163040983284_005-and-MO_411020944797_001-1751736887/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/20504fee-6b96-4fa3-a8a5-e926fe122f0a-007/TE_163040983284_005-and-MO_411020944797_001-1751736887/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/20504fee-6b96-4fa3-a8a5-e926fe122f0a-007/TE_163040983284_005-and-MO_411020944797_001-1751736887/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":4.27,"usertime":3.81,"systime":4.95,"memmax":117040,"memavg":0} output/kim.log: --------------- 2025-07-05:12:53:36CDT * 2 * information * 0x559c0fc9cb10_0x559c0f75eaa0 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x559c0f75eaa0'.2025-07-05:12:53:36CDT * 3 * information * 0x559c0fc9cb10_0x559c0f75eaa0 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-05:12:53:36CDT * 4 * information * 0x559c0fc9cb10_0x559c0f75eaa0 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-05:12:53:36CDT * 2 * warning * 0x559c0fc9cb10 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-05:12:53:36CDT * 5 * information * 0x559c0ecdc780_0x559c0ecdd630 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 2 * information * 0x559c0ecdc780 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 5 * information * 0x559c0ecdd790_0x559c0ecdd180 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 2 * information * 0x559c0ecdd790 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 5 * information * 0x559c0ecf6810_0x559c0ecdd6e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 2 * information * 0x559c0ecf6810 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 5 * information * 0x559c0ecf8a90_0x559c0ecdf150 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 2 * information * 0x559c0ecf8a90 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 5 * information * 0x559c0ecfb4a0_0x559c0ecf73b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 2 * information * 0x559c0ecfb4a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 5 * information * 0x559c0f75dac0_0x559c0ecf9c90 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 2 * information * 0x559c0f75dac0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 5 * information * 0x559c0f78bce0_0x559c0f4bf5a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:36CDT * 2 * information * 0x559c0f78bce0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:38CDT * 0 * information * 0x559c0fc9cb10_0x559c0f75eaa0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:53:38CDT * 0 * information * 0x559c0fc9cb10 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------