AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [2.72525579] Angstroms, c = [4.45032407] Angstroms, c/a = 1.632993 Total energy: -20.689826805659937 eV Cohesive energy: -5.172456701414984 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/153b292d-a121-4aa5-a6cc-cbd6a79254ca-007/TE_163040983284_005-and-MO_944449444863_001-1751983405/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/153b292d-a121-4aa5-a6cc-cbd6a79254ca-007/TE_163040983284_005-and-MO_944449444863_001-1751983405/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/153b292d-a121-4aa5-a6cc-cbd6a79254ca-007/TE_163040983284_005-and-MO_944449444863_001-1751983405/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/153b292d-a121-4aa5-a6cc-cbd6a79254ca-007/TE_163040983284_005-and-MO_944449444863_001-1751983405/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/153b292d-a121-4aa5-a6cc-cbd6a79254ca-007/TE_163040983284_005-and-MO_944449444863_001-1751983405/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/153b292d-a121-4aa5-a6cc-cbd6a79254ca-007/TE_163040983284_005-and-MO_944449444863_001-1751983405/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_V__TE_163040983284_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":5.42,"usertime":4.20,"systime":5.88,"memmax":105928,"memavg":0} output/kim.log: --------------- 2025-07-08:09:06:39CDT * 2 * information * 0x55c4de47ba50_0x55c4ddf3d930 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x55c4ddf3d930'.2025-07-08:09:06:39CDT * 3 * information * 0x55c4de47ba50_0x55c4ddf3d930 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-08:09:06:39CDT * 4 * information * 0x55c4de47ba50_0x55c4ddf3d930 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-08:09:06:39CDT * 5 * information * 0x55c4dd4bb730_0x55c4dd4bc4b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 2 * information * 0x55c4dd4bb730 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 5 * information * 0x55c4dd4bc610_0x55c4dd4bc130 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 2 * information * 0x55c4dd4bc610 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 5 * information * 0x55c4dd4d53e0_0x55c4dd4bc560 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 2 * information * 0x55c4dd4d53e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 5 * information * 0x55c4dd4d7980_0x55c4dd4bdfb0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 2 * information * 0x55c4dd4d7980 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 5 * information * 0x55c4dd4da3b0_0x55c4dd4d6190 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 2 * information * 0x55c4dd4da3b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 5 * information * 0x55c4ddccb730_0x55c4dd4d8af0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 2 * information * 0x55c4ddccb730 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 5 * information * 0x55c4ddf6ab80_0x55c4ddc9e410 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 2 * information * 0x55c4ddf6ab80 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:39CDT * 2 * warning * 0x55c4de47ba50 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-08:09:06:42CDT * 0 * information * 0x55c4de47ba50_0x55c4ddf3d930 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:09:06:42CDT * 0 * information * 0x55c4de47ba50 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------