# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.068500626087188*${_u_distance} variable latticeconst_converted equal 4.068500626087188*1 lattice fcc ${latticeconst_converted} lattice fcc 4.06850062608719 Lattice spacing in x,y,z = 4.0685006 4.0685006 4.0685006 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (40.685006 40.685006 40.685006) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (40.685006 40.685006 40.685006) create_atoms CPU = 0.003 seconds variable mass_converted equal 196.96655*${_u_mass} variable mass_converted equal 196.96655*1 kim_interactions Au WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Au #=== BEGIN kim interactions ================================== pair_style kim EAM_Dynamo_NormanStarikovStegailov_2012_Au__MO_592431957881_000 pair_coeff * * Au #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 196.96655 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 67344.6595094155 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 67344.6595094155/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 67344.6595094155/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 67344.6595094155/(1*1*${_u_distance}) variable V0_metal equal 67344.6595094155/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 67344.6595094155*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 67344.6595094155 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_592431957881_000#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.607 | 4.607 | 4.607 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -17045.919 -17045.919 -17197.451 -17197.451 293.15 293.15 67344.66 67344.66 2403.4132 2403.4132 1000 -16868.776 -16868.776 -17029.354 -17029.354 310.64961 310.64961 68343.042 68343.042 -3652.1405 -3652.1405 Loop time of 36.5028 on 1 procs for 1000 steps with 4000 atoms Performance: 2.367 ns/day, 10.140 hours/ns, 27.395 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 35.576 | 35.576 | 35.576 | 0.0 | 97.46 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.14683 | 0.14683 | 0.14683 | 0.0 | 0.40 Output | 0.00022093 | 0.00022093 | 0.00022093 | 0.0 | 0.00 Modify | 0.6791 | 0.6791 | 0.6791 | 0.0 | 1.86 Other | | 0.1002 | | | 0.27 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 344000.0 ave 344000 max 344000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 344000 Ave neighs/atom = 86.000000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -16868.776 -16868.776 -17029.354 -17029.354 310.64961 310.64961 68343.042 68343.042 -3652.1405 -3652.1405 2000 -16889.848 -16889.848 -17034.562 -17034.562 279.95951 279.95951 68129.975 68129.975 1073.8784 1073.8784 Loop time of 38.5805 on 1 procs for 1000 steps with 4000 atoms Performance: 2.239 ns/day, 10.717 hours/ns, 25.920 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.684 | 37.684 | 37.684 | 0.0 | 97.68 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.14142 | 0.14142 | 0.14142 | 0.0 | 0.37 Output | 0.00021365 | 0.00021365 | 0.00021365 | 0.0 | 0.00 Modify | 0.65632 | 0.65632 | 0.65632 | 0.0 | 1.70 Other | | 0.09843 | | | 0.26 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 409330.0 ave 409330 max 409330 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 409330 Ave neighs/atom = 102.33250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -16889.848 -16889.848 -17034.562 -17034.562 279.95951 279.95951 68129.975 68129.975 1073.8784 1073.8784 3000 -16882.924 -16882.924 -17038.636 -17038.636 301.23394 301.23394 68115.351 68115.351 1093.6846 1093.6846 Loop time of 38.1806 on 1 procs for 1000 steps with 4000 atoms Performance: 2.263 ns/day, 10.606 hours/ns, 26.191 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.302 | 37.302 | 37.302 | 0.0 | 97.70 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.1383 | 0.1383 | 0.1383 | 0.0 | 0.36 Output | 0.00021473 | 0.00021473 | 0.00021473 | 0.0 | 0.00 Modify | 0.64078 | 0.64078 | 0.64078 | 0.0 | 1.68 Other | | 0.09913 | | | 0.26 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 413258.0 ave 413258 max 413258 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 413258 Ave neighs/atom = 103.31450 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -16882.924 -16882.924 -17038.636 -17038.636 301.23394 301.23394 68115.351 68115.351 1093.6846 1093.6846 4000 -16880.725 -16880.725 -17035.193 -17035.193 298.82866 298.82866 68174.949 68174.949 -29.332957 -29.332957 Loop time of 38.3309 on 1 procs for 1000 steps with 4000 atoms Performance: 2.254 ns/day, 10.647 hours/ns, 26.089 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.457 | 37.457 | 37.457 | 0.0 | 97.72 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13838 | 0.13838 | 0.13838 | 0.0 | 0.36 Output | 0.00021553 | 0.00021553 | 0.00021553 | 0.0 | 0.00 Modify | 0.63827 | 0.63827 | 0.63827 | 0.0 | 1.67 Other | | 0.09685 | | | 0.25 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 412676.0 ave 412676 max 412676 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 412676 Ave neighs/atom = 103.16900 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -16880.725 -16880.725 -17035.193 -17035.193 298.82866 298.82866 68174.949 68174.949 -29.332957 -29.332957 5000 -16883.576 -16883.576 -17034.811 -17034.811 292.57434 292.57434 68143.31 68143.31 825.55141 825.55141 Loop time of 38.6891 on 1 procs for 1000 steps with 4000 atoms Performance: 2.233 ns/day, 10.747 hours/ns, 25.847 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.808 | 37.808 | 37.808 | 0.0 | 97.72 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.14324 | 0.14324 | 0.14324 | 0.0 | 0.37 Output | 0.0001793 | 0.0001793 | 0.0001793 | 0.0 | 0.00 Modify | 0.64502 | 0.64502 | 0.64502 | 0.0 | 1.67 Other | | 0.09294 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 412054.0 ave 412054 max 412054 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 412054 Ave neighs/atom = 103.01350 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 294.755249689187, Press = -37.0876981679754 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -16883.576 -16883.576 -17034.811 -17034.811 292.57434 292.57434 68143.31 68143.31 825.55141 825.55141 6000 -16883.332 -16883.332 -17033.65 -17033.65 290.80045 290.80045 68180.406 68180.406 30.641464 30.641464 Loop time of 39.0828 on 1 procs for 1000 steps with 4000 atoms Performance: 2.211 ns/day, 10.856 hours/ns, 25.587 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.177 | 38.177 | 38.177 | 0.0 | 97.68 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.14483 | 0.14483 | 0.14483 | 0.0 | 0.37 Output | 0.00017945 | 0.00017945 | 0.00017945 | 0.0 | 0.00 Modify | 0.66804 | 0.66804 | 0.66804 | 0.0 | 1.71 Other | | 0.09287 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 412580.0 ave 412580 max 412580 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 412580 Ave neighs/atom = 103.14500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.045077427154, Press = -13.3331030007635 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -16883.332 -16883.332 -17033.65 -17033.65 290.80045 290.80045 68180.406 68180.406 30.641464 30.641464 7000 -16884.34 -16884.34 -17035.054 -17035.054 291.5655 291.5655 68207.483 68207.483 -912.72819 -912.72819 Loop time of 42.111 on 1 procs for 1000 steps with 4000 atoms Performance: 2.052 ns/day, 11.697 hours/ns, 23.747 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 41.082 | 41.082 | 41.082 | 0.0 | 97.56 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15849 | 0.15849 | 0.15849 | 0.0 | 0.38 Output | 0.00018499 | 0.00018499 | 0.00018499 | 0.0 | 0.00 Modify | 0.77223 | 0.77223 | 0.77223 | 0.0 | 1.83 Other | | 0.09781 | | | 0.23 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 411846.0 ave 411846 max 411846 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 411846 Ave neighs/atom = 102.96150 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.248950111238, Press = -19.5456137812968 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -16884.34 -16884.34 -17035.054 -17035.054 291.5655 291.5655 68207.483 68207.483 -912.72819 -912.72819 8000 -16883.453 -16883.453 -17035.902 -17035.902 294.92326 294.92326 68154.349 68154.349 348.05919 348.05919 Loop time of 44.0171 on 1 procs for 1000 steps with 4000 atoms Performance: 1.963 ns/day, 12.227 hours/ns, 22.718 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.913 | 42.913 | 42.913 | 0.0 | 97.49 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16572 | 0.16572 | 0.16572 | 0.0 | 0.38 Output | 0.00021994 | 0.00021994 | 0.00021994 | 0.0 | 0.00 Modify | 0.8364 | 0.8364 | 0.8364 | 0.0 | 1.90 Other | | 0.1021 | | | 0.23 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 411450.0 ave 411450 max 411450 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 411450 Ave neighs/atom = 102.86250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.023934528748, Press = -10.7770215775064 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -16883.453 -16883.453 -17035.902 -17035.902 294.92326 294.92326 68154.349 68154.349 348.05919 348.05919 9000 -16885.454 -16885.454 -17035.946 -17035.946 291.13684 291.13684 68116.59 68116.59 1349.4623 1349.4623 Loop time of 43.5884 on 1 procs for 1000 steps with 4000 atoms Performance: 1.982 ns/day, 12.108 hours/ns, 22.942 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.476 | 42.476 | 42.476 | 0.0 | 97.45 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16334 | 0.16334 | 0.16334 | 0.0 | 0.37 Output | 0.00022151 | 0.00022151 | 0.00022151 | 0.0 | 0.00 Modify | 0.84327 | 0.84327 | 0.84327 | 0.0 | 1.93 Other | | 0.1053 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 412672.0 ave 412672 max 412672 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 412672 Ave neighs/atom = 103.16800 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.97420001153, Press = -5.36471075049303 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -16885.454 -16885.454 -17035.946 -17035.946 291.13684 291.13684 68116.59 68116.59 1349.4623 1349.4623 10000 -16881.471 -16881.471 -17032.705 -17032.705 292.57121 292.57121 68259.534 68259.534 -2021.0043 -2021.0043 Loop time of 43.3103 on 1 procs for 1000 steps with 4000 atoms Performance: 1.995 ns/day, 12.031 hours/ns, 23.089 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.21 | 42.21 | 42.21 | 0.0 | 97.46 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16282 | 0.16282 | 0.16282 | 0.0 | 0.38 Output | 0.0001806 | 0.0001806 | 0.0001806 | 0.0 | 0.00 Modify | 0.83219 | 0.83219 | 0.83219 | 0.0 | 1.92 Other | | 0.1051 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 413694.0 ave 413694 max 413694 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 413694 Ave neighs/atom = 103.42350 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.770235086287, Press = -1.71982449983481 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -16881.471 -16881.471 -17032.705 -17032.705 292.57121 292.57121 68259.534 68259.534 -2021.0043 -2021.0043 11000 -16886.396 -16886.396 -17037.347 -17037.347 292.02416 292.02416 68133.868 68133.868 679.60469 679.60469 Loop time of 44.3388 on 1 procs for 1000 steps with 4000 atoms Performance: 1.949 ns/day, 12.316 hours/ns, 22.554 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 43.22 | 43.22 | 43.22 | 0.0 | 97.48 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16947 | 0.16947 | 0.16947 | 0.0 | 0.38 Output | 0.00022217 | 0.00022217 | 0.00022217 | 0.0 | 0.00 Modify | 0.84483 | 0.84483 | 0.84483 | 0.0 | 1.91 Other | | 0.1045 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 410392.0 ave 410392 max 410392 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 410392 Ave neighs/atom = 102.59800 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.711265791609, Press = -0.341521795921872 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -16886.396 -16886.396 -17037.347 -17037.347 292.02416 292.02416 68133.868 68133.868 679.60469 679.60469 12000 -16877.809 -16877.809 -17031.837 -17031.837 297.97692 297.97692 68132.173 68132.173 1534.7236 1534.7236 Loop time of 44.0275 on 1 procs for 1000 steps with 4000 atoms Performance: 1.962 ns/day, 12.230 hours/ns, 22.713 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.912 | 42.912 | 42.912 | 0.0 | 97.47 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16761 | 0.16761 | 0.16761 | 0.0 | 0.38 Output | 0.00017932 | 0.00017932 | 0.00017932 | 0.0 | 0.00 Modify | 0.84205 | 0.84205 | 0.84205 | 0.0 | 1.91 Other | | 0.1053 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 412694.0 ave 412694 max 412694 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 412694 Ave neighs/atom = 103.17350 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.944273554266, Press = -5.8376755627003 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -16877.809 -16877.809 -17031.837 -17031.837 297.97692 297.97692 68132.173 68132.173 1534.7236 1534.7236 13000 -16885.123 -16885.123 -17034.558 -17034.558 289.09119 289.09119 68213.014 68213.014 -1131.9469 -1131.9469 Loop time of 43.8875 on 1 procs for 1000 steps with 4000 atoms Performance: 1.969 ns/day, 12.191 hours/ns, 22.786 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.773 | 42.773 | 42.773 | 0.0 | 97.46 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16527 | 0.16527 | 0.16527 | 0.0 | 0.38 Output | 0.00023409 | 0.00023409 | 0.00023409 | 0.0 | 0.00 Modify | 0.84285 | 0.84285 | 0.84285 | 0.0 | 1.92 Other | | 0.1065 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 413666.0 ave 413666 max 413666 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 413666 Ave neighs/atom = 103.41650 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.102387598329, Press = -4.23231600299869 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -16885.123 -16885.123 -17034.558 -17034.558 289.09119 289.09119 68213.014 68213.014 -1131.9469 -1131.9469 14000 -16888.219 -16888.219 -17037.343 -17037.343 288.48888 288.48888 68144.105 68144.105 507.1796 507.1796 Loop time of 43.7588 on 1 procs for 1000 steps with 4000 atoms Performance: 1.974 ns/day, 12.155 hours/ns, 22.853 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.631 | 42.631 | 42.631 | 0.0 | 97.42 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16558 | 0.16558 | 0.16558 | 0.0 | 0.38 Output | 0.00027986 | 0.00027986 | 0.00027986 | 0.0 | 0.00 Modify | 0.85454 | 0.85454 | 0.85454 | 0.0 | 1.95 Other | | 0.1069 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 411194.0 ave 411194 max 411194 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 411194 Ave neighs/atom = 102.79850 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.12411399028, Press = 0.235451187188492 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -16888.219 -16888.219 -17037.343 -17037.343 288.48888 288.48888 68144.105 68144.105 507.1796 507.1796 15000 -16886.22 -16886.22 -17033.643 -17033.643 285.20026 285.20026 68167.743 68167.743 110.82131 110.82131 Loop time of 44.1071 on 1 procs for 1000 steps with 4000 atoms Performance: 1.959 ns/day, 12.252 hours/ns, 22.672 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.975 | 42.975 | 42.975 | 0.0 | 97.43 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.1673 | 0.1673 | 0.1673 | 0.0 | 0.38 Output | 0.0004602 | 0.0004602 | 0.0004602 | 0.0 | 0.00 Modify | 0.85602 | 0.85602 | 0.85602 | 0.0 | 1.94 Other | | 0.108 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 412182.0 ave 412182 max 412182 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 412182 Ave neighs/atom = 103.04550 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.136497909527, Press = -5.7417852701889 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -16886.22 -16886.22 -17033.643 -17033.643 285.20026 285.20026 68167.743 68167.743 110.82131 110.82131 16000 -16882.265 -16882.265 -17036.146 -17036.146 297.69421 297.69421 68114.758 68114.758 1344.7342 1344.7342 Loop time of 43.9032 on 1 procs for 1000 steps with 4000 atoms Performance: 1.968 ns/day, 12.195 hours/ns, 22.777 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.772 | 42.772 | 42.772 | 0.0 | 97.42 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16885 | 0.16885 | 0.16885 | 0.0 | 0.38 Output | 0.00022724 | 0.00022724 | 0.00022724 | 0.0 | 0.00 Modify | 0.85422 | 0.85422 | 0.85422 | 0.0 | 1.95 Other | | 0.1082 | | | 0.25 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 412032.0 ave 412032 max 412032 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 412032 Ave neighs/atom = 103.00800 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.148342422086, Press = -0.417934444528326 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -16882.265 -16882.265 -17036.146 -17036.146 297.69421 297.69421 68114.758 68114.758 1344.7342 1344.7342 17000 -16877.044 -16877.044 -17030.824 -17030.824 297.49847 297.49847 68196.972 68196.972 -112.89175 -112.89175 Loop time of 44.1738 on 1 procs for 1000 steps with 4000 atoms Performance: 1.956 ns/day, 12.270 hours/ns, 22.638 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 43.045 | 43.045 | 43.045 | 0.0 | 97.45 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16839 | 0.16839 | 0.16839 | 0.0 | 0.38 Output | 0.00017987 | 0.00017987 | 0.00017987 | 0.0 | 0.00 Modify | 0.85356 | 0.85356 | 0.85356 | 0.0 | 1.93 Other | | 0.1064 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 413414.0 ave 413414 max 413414 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 413414 Ave neighs/atom = 103.35350 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.291945387117, Press = -1.08427511703548 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -16877.044 -16877.044 -17030.824 -17030.824 297.49847 297.49847 68196.972 68196.972 -112.89175 -112.89175 18000 -16887.953 -16887.953 -17039.688 -17039.688 293.54227 293.54227 68113.518 68113.518 904.26382 904.26382 Loop time of 44.1458 on 1 procs for 1000 steps with 4000 atoms Performance: 1.957 ns/day, 12.263 hours/ns, 22.652 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 43.036 | 43.036 | 43.036 | 0.0 | 97.49 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16744 | 0.16744 | 0.16744 | 0.0 | 0.38 Output | 0.00027716 | 0.00027716 | 0.00027716 | 0.0 | 0.00 Modify | 0.83913 | 0.83913 | 0.83913 | 0.0 | 1.90 Other | | 0.1034 | | | 0.23 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 412166.0 ave 412166 max 412166 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 412166 Ave neighs/atom = 103.04150 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.339891622463, Press = -3.39043870344774 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -16887.953 -16887.953 -17039.688 -17039.688 293.54227 293.54227 68113.518 68113.518 904.26382 904.26382 19000 -16884.721 -16884.721 -17035.475 -17035.475 291.64254 291.64254 68203.376 68203.376 -988.94673 -988.94673 Loop time of 44.1883 on 1 procs for 1000 steps with 4000 atoms Performance: 1.955 ns/day, 12.275 hours/ns, 22.630 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 43.077 | 43.077 | 43.077 | 0.0 | 97.49 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.1671 | 0.1671 | 0.1671 | 0.0 | 0.38 Output | 0.00018544 | 0.00018544 | 0.00018544 | 0.0 | 0.00 Modify | 0.84046 | 0.84046 | 0.84046 | 0.0 | 1.90 Other | | 0.1033 | | | 0.23 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 413122.0 ave 413122 max 413122 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 413122 Ave neighs/atom = 103.28050 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.228477696377, Press = -1.11166644069265 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -16884.721 -16884.721 -17035.475 -17035.475 291.64254 291.64254 68203.376 68203.376 -988.94673 -988.94673 20000 -16883.096 -16883.096 -17034.72 -17034.72 293.32608 293.32608 68104.022 68104.022 1816.1449 1816.1449 Loop time of 41.5864 on 1 procs for 1000 steps with 4000 atoms Performance: 2.078 ns/day, 11.552 hours/ns, 24.046 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 40.566 | 40.566 | 40.566 | 0.0 | 97.55 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15504 | 0.15504 | 0.15504 | 0.0 | 0.37 Output | 0.00017638 | 0.00017638 | 0.00017638 | 0.0 | 0.00 Modify | 0.76365 | 0.76365 | 0.76365 | 0.0 | 1.84 Other | | 0.1016 | | | 0.24 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 411412.0 ave 411412 max 411412 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 411412 Ave neighs/atom = 102.85300 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.249561155884, Press = -2.24748337219876 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.6 ghost atom cutoff = 7.6 binsize = 3.8, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.6 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.988 | 4.988 | 4.988 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -16883.096 -16883.096 -17034.72 -17034.72 293.32608 293.32608 68104.022 68104.022 1816.1449 1816.1449 21000 -16882.925 -16882.925 -17034.589 -17034.589 293.40378 293.40378 68200.833 68200.833 -682.13622 -682.13622 Loop time of 39.4298 on 1 procs for 1000 steps with 4000 atoms Performance: 2.191 ns/day, 10.953 hours/ns, 25.362 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.493 | 38.493 | 38.493 | 0.0 | 97.62 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.1478 | 0.1478 | 0.1478 | 0.0 | 0.37 Output | 0.00017737 | 0.00017737 | 0.00017737 | 0.0 | 0.00 Modify | 0.69231 | 0.69231 | 0.69231 | 0.0 | 1.76 Other | | 0.09679 | | | 0.25 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 413372.0 ave 413372 max 413372 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 413372 Ave neighs/atom = 103.34300 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 68171.0997427955 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0