# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.165284737944603*${_u_distance} variable latticeconst_converted equal 4.165284737944603*1 lattice fcc ${latticeconst_converted} lattice fcc 4.1652847379446 Lattice spacing in x,y,z = 4.16528 4.16528 4.16528 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (41.6528 41.6528 41.6528) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms create_atoms CPU = 0.000804186 secs variable mass_converted equal 196.96655*${_u_mass} variable mass_converted equal 196.96655*1 kim_interactions Au #=== BEGIN kim_interactions ================================== pair_style reax/c /tmp/kim-simulator-model-parameter-file-directory-XXXXXXRIOTIv/lmp_control safezone 2.0 mincap 100 pair_coeff * * /tmp/kim-simulator-model-parameter-file-directory-XXXXXXRIOTIv/ffield.reax.AuO Au Reading potential file /tmp/kim-simulator-model-parameter-file-directory-XXXXXXRIOTIv/ffield.reax.AuO with DATE: 2011-02-18 fix reaxqeq all qeq/reax 1 0.0 10.0 1.0e-6 reax/c #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 196.96655 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 72266.011377637 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 72266.011377637/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 72266.011377637/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 72266.011377637/(1*1*${_u_distance}) variable V0_metal equal 72266.011377637/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 72266.011377637*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 72266.011377637 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1000 timestep ${timestep_converted} timestep 1 variable temp_converted equal 313.15*${_u_temperature} variable temp_converted equal 313.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1000 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*0.986923266716013 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1000 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 313.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso 0 0 1000 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/23.0605480120695 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/23.0605480120695 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/0.986923266716013 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "313.15 - 0.2" variable T_up equal "313.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 4000, page size: 100000 master list distance cutoff = 12 ghost atom cutoff = 12 binsize = 6, bins = 7 7 7 2 neighbor lists, perpetual/occasional/extra = 2 0 0 (1) pair reax/c, perpetual attributes: half, newton off, ghost pair build: half/bin/newtoff/ghost stencil: half/ghost/bin/3d/newtoff bin: standard (2) fix qeq/reax, perpetual, copy from (1) attributes: half, newton off, ghost pair build: copy stencil: none bin: none Per MPI rank memory allocation (min/avg/max) = 618.4 | 618.4 | 618.4 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -342098.52 -14834.796 -345831.35 -14996.667 313.15 313.15 72266.011 72266.011 2361.1798 2392.4654 1000 -338039.41 -14658.776 -341987.27 -14829.971 331.18921 331.18921 73138.631 73138.631 -944.64468 -957.16123 Loop time of 634.858 on 1 procs for 1000 steps with 4000 atoms Performance: 0.136 ns/day, 176.349 hours/ns, 1.575 timesteps/s 58.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 535.58 | 535.58 | 535.58 | 0.0 | 84.36 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11756 | 0.11756 | 0.11756 | 0.0 | 0.02 Output | 6.3181e-05 | 6.3181e-05 | 6.3181e-05 | 0.0 | 0.00 Modify | 99.129 | 99.129 | 99.129 | 0.0 | 15.61 Other | | 0.02981 | | | 0.00 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 977312 ave 977312 max 977312 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 977312 Ave neighs/atom = 244.328 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -338039.41 -14658.776 -341987.27 -14829.971 331.18921 331.18921 73138.631 73138.631 -944.64468 -957.16123 2000 -338436.43 -14675.993 -342209.11 -14839.591 316.49281 316.49281 72978.945 72978.945 1142.2539 1157.3887 Loop time of 646.223 on 1 procs for 1000 steps with 4000 atoms Performance: 0.134 ns/day, 179.506 hours/ns, 1.547 timesteps/s 58.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 545.86 | 545.86 | 545.86 | 0.0 | 84.47 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.10418 | 0.10418 | 0.10418 | 0.0 | 0.02 Output | 5.3883e-05 | 5.3883e-05 | 5.3883e-05 | 0.0 | 0.00 Modify | 100.17 | 100.17 | 100.17 | 0.0 | 15.50 Other | | 0.09716 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983708 ave 983708 max 983708 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983708 Ave neighs/atom = 245.927 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -338436.43 -14675.993 -342209.11 -14839.591 316.49281 316.49281 72978.945 72978.945 1142.2539 1157.3887 3000 -338170.94 -14664.48 -341926.53 -14827.338 315.05988 315.05988 73124.282 73124.282 -673.33042 -682.25205 Loop time of 644.51 on 1 procs for 1000 steps with 4000 atoms Performance: 0.134 ns/day, 179.031 hours/ns, 1.552 timesteps/s 58.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 543.94 | 543.94 | 543.94 | 0.0 | 84.40 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15542 | 0.15542 | 0.15542 | 0.0 | 0.02 Output | 4.7922e-05 | 4.7922e-05 | 4.7922e-05 | 0.0 | 0.00 Modify | 100.38 | 100.38 | 100.38 | 0.0 | 15.58 Other | | 0.03012 | | | 0.00 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 984084 ave 984084 max 984084 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 984084 Ave neighs/atom = 246.021 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -338170.94 -14664.48 -341926.53 -14827.338 315.05988 315.05988 73124.282 73124.282 -673.33042 -682.25205 4000 -338443.32 -14676.291 -342145.85 -14836.848 310.60772 310.60772 73031.078 73031.078 276.4095 280.07193 Loop time of 642.279 on 1 procs for 1000 steps with 4000 atoms Performance: 0.135 ns/day, 178.411 hours/ns, 1.557 timesteps/s 58.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 542.48 | 542.48 | 542.48 | 0.0 | 84.46 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13735 | 0.13735 | 0.13735 | 0.0 | 0.02 Output | 5.6028e-05 | 5.6028e-05 | 5.6028e-05 | 0.0 | 0.00 Modify | 99.621 | 99.621 | 99.621 | 0.0 | 15.51 Other | | 0.04341 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983898 ave 983898 max 983898 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983898 Ave neighs/atom = 245.975 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -338443.32 -14676.291 -342145.85 -14836.848 310.60772 310.60772 73031.078 73031.078 276.4095 280.07193 5000 -338217.92 -14666.517 -341949.32 -14828.326 313.03055 313.03055 73085.42 73085.42 -121.22235 -122.82854 Loop time of 650.145 on 1 procs for 1000 steps with 4000 atoms Performance: 0.133 ns/day, 180.596 hours/ns, 1.538 timesteps/s 57.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 549.37 | 549.37 | 549.37 | 0.0 | 84.50 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.21026 | 0.21026 | 0.21026 | 0.0 | 0.03 Output | 7.4148e-05 | 7.4148e-05 | 7.4148e-05 | 0.0 | 0.00 Modify | 100.52 | 100.52 | 100.52 | 0.0 | 15.46 Other | | 0.04836 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 984010 ave 984010 max 984010 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 984010 Ave neighs/atom = 246.002 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 317.686732358159, Press = 1.79420057358243 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -338217.92 -14666.517 -341949.32 -14828.326 313.03055 313.03055 73085.42 73085.42 -121.22235 -122.82854 6000 -338349.4 -14672.219 -342096.57 -14834.711 314.35297 314.35297 73032.224 73032.224 492.41017 498.9346 Loop time of 624.939 on 1 procs for 1000 steps with 4000 atoms Performance: 0.138 ns/day, 173.594 hours/ns, 1.600 timesteps/s 60.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 527.79 | 527.79 | 527.79 | 0.0 | 84.46 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.1885 | 0.1885 | 0.1885 | 0.0 | 0.03 Output | 3.6001e-05 | 3.6001e-05 | 3.6001e-05 | 0.0 | 0.00 Modify | 96.914 | 96.914 | 96.914 | 0.0 | 15.51 Other | | 0.04293 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983877 ave 983877 max 983877 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983877 Ave neighs/atom = 245.969 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.486717823448, Press = 6.28066804198585 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -338349.4 -14672.219 -342096.57 -14834.711 314.35297 314.35297 73032.224 73032.224 492.41017 498.9346 7000 -338298.09 -14669.994 -341932.26 -14827.586 304.87334 304.87334 73157.032 73157.032 -1430.7239 -1449.681 Loop time of 649.028 on 1 procs for 1000 steps with 4000 atoms Performance: 0.133 ns/day, 180.286 hours/ns, 1.541 timesteps/s 58.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 549.08 | 549.08 | 549.08 | 0.0 | 84.60 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.22435 | 0.22435 | 0.22435 | 0.0 | 0.03 Output | 3.7909e-05 | 3.7909e-05 | 3.7909e-05 | 0.0 | 0.00 Modify | 99.698 | 99.698 | 99.698 | 0.0 | 15.36 Other | | 0.03085 | | | 0.00 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 984025 ave 984025 max 984025 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 984025 Ave neighs/atom = 246.006 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.233986468321, Press = 26.4651102987233 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -338298.09 -14669.994 -341932.26 -14827.586 304.87334 304.87334 73157.032 73157.032 -1430.7239 -1449.681 8000 -338335.38 -14671.61 -342108.2 -14835.216 316.50521 316.50521 73042.001 73042.001 229.45728 232.49759 Loop time of 633.785 on 1 procs for 1000 steps with 4000 atoms Performance: 0.136 ns/day, 176.051 hours/ns, 1.578 timesteps/s 59.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 535.91 | 535.91 | 535.91 | 0.0 | 84.56 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15624 | 0.15624 | 0.15624 | 0.0 | 0.02 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 97.66 | 97.66 | 97.66 | 0.0 | 15.41 Other | | 0.05646 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983714 ave 983714 max 983714 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983714 Ave neighs/atom = 245.929 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.282122186456, Press = -1.64458558889623 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -338335.38 -14671.61 -342108.2 -14835.216 316.50521 316.50521 73042.001 73042.001 229.45728 232.49759 9000 -338247.91 -14667.818 -342035.18 -14832.049 317.71699 317.71699 73044.158 73044.158 527.36812 534.35574 Loop time of 646.181 on 1 procs for 1000 steps with 4000 atoms Performance: 0.134 ns/day, 179.495 hours/ns, 1.548 timesteps/s 58.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 545.86 | 545.86 | 545.86 | 0.0 | 84.48 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16665 | 0.16665 | 0.16665 | 0.0 | 0.03 Output | 4.3154e-05 | 4.3154e-05 | 4.3154e-05 | 0.0 | 0.00 Modify | 100.12 | 100.12 | 100.12 | 0.0 | 15.49 Other | | 0.02982 | | | 0.00 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 984054 ave 984054 max 984054 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 984054 Ave neighs/atom = 246.013 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.592972242864, Press = 7.23707258352524 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -338247.91 -14667.818 -342035.18 -14832.049 317.71699 317.71699 73044.158 73044.158 527.36812 534.35575 10000 -338353.8 -14672.41 -342060.13 -14833.131 310.92632 310.92632 73155.519 73155.519 -1658.3806 -1680.3542 Loop time of 632.769 on 1 procs for 1000 steps with 4000 atoms Performance: 0.137 ns/day, 175.769 hours/ns, 1.580 timesteps/s 59.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 533.56 | 533.56 | 533.56 | 0.0 | 84.32 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.18172 | 0.18172 | 0.18172 | 0.0 | 0.03 Output | 3.1948e-05 | 3.1948e-05 | 3.1948e-05 | 0.0 | 0.00 Modify | 98.981 | 98.981 | 98.981 | 0.0 | 15.64 Other | | 0.04375 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983991 ave 983991 max 983991 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983991 Ave neighs/atom = 245.998 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.281102298356, Press = -4.75490896984697 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -338353.8 -14672.41 -342060.13 -14833.131 310.92632 310.92632 73155.519 73155.519 -1658.3806 -1680.3542 11000 -338326.5 -14671.226 -342140.56 -14836.619 319.96429 319.96429 73048.131 73048.131 130.48427 132.21318 Loop time of 648.37 on 1 procs for 1000 steps with 4000 atoms Performance: 0.133 ns/day, 180.103 hours/ns, 1.542 timesteps/s 58.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 548.65 | 548.65 | 548.65 | 0.0 | 84.62 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11654 | 0.11654 | 0.11654 | 0.0 | 0.02 Output | 3.0994e-05 | 3.0994e-05 | 3.0994e-05 | 0.0 | 0.00 Modify | 99.561 | 99.561 | 99.561 | 0.0 | 15.36 Other | | 0.04483 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983620 ave 983620 max 983620 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983620 Ave neighs/atom = 245.905 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.129475901625, Press = 2.802051925044 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -338326.5 -14671.226 -342140.56 -14836.619 319.96429 319.96429 73048.131 73048.131 130.48427 132.21318 12000 -338344.52 -14672.007 -342097.2 -14834.738 314.81485 314.81485 73067.449 73067.449 -141.28179 -143.15377 Loop time of 641.544 on 1 procs for 1000 steps with 4000 atoms Performance: 0.135 ns/day, 178.207 hours/ns, 1.559 timesteps/s 58.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 540.69 | 540.69 | 540.69 | 0.0 | 84.28 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13352 | 0.13352 | 0.13352 | 0.0 | 0.02 Output | 3.1948e-05 | 3.1948e-05 | 3.1948e-05 | 0.0 | 0.00 Modify | 100.65 | 100.65 | 100.65 | 0.0 | 15.69 Other | | 0.06897 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983579 ave 983579 max 983579 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983579 Ave neighs/atom = 245.895 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.382930249058, Press = -0.348754154474136 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -338344.52 -14672.007 -342097.2 -14834.738 314.81485 314.81485 73067.449 73067.449 -141.28179 -143.15377 13000 -338243.54 -14667.628 -342005.7 -14830.771 315.61064 315.61064 73115.147 73115.147 -793.95238 -804.47225 Loop time of 646.345 on 1 procs for 1000 steps with 4000 atoms Performance: 0.134 ns/day, 179.540 hours/ns, 1.547 timesteps/s 58.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 545.72 | 545.72 | 545.72 | 0.0 | 84.43 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13488 | 0.13488 | 0.13488 | 0.0 | 0.02 Output | 3.6001e-05 | 3.6001e-05 | 3.6001e-05 | 0.0 | 0.00 Modify | 100.45 | 100.45 | 100.45 | 0.0 | 15.54 Other | | 0.04397 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983910 ave 983910 max 983910 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983910 Ave neighs/atom = 245.977 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.349532197987, Press = -1.79022405480738 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -338243.54 -14667.628 -342005.7 -14830.771 315.61064 315.61064 73115.147 73115.147 -793.95238 -804.47225 14000 -338353.36 -14672.39 -342089.92 -14834.423 313.46246 313.46246 73085.649 73085.649 -514.46226 -521.27889 Loop time of 637.105 on 1 procs for 1000 steps with 4000 atoms Performance: 0.136 ns/day, 176.974 hours/ns, 1.570 timesteps/s 59.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 538.38 | 538.38 | 538.38 | 0.0 | 84.50 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.10241 | 0.10241 | 0.10241 | 0.0 | 0.02 Output | 3.7909e-05 | 3.7909e-05 | 3.7909e-05 | 0.0 | 0.00 Modify | 98.58 | 98.58 | 98.58 | 0.0 | 15.47 Other | | 0.04688 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983984 ave 983984 max 983984 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983984 Ave neighs/atom = 245.996 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.21634993268, Press = -1.32916288820885 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -338353.36 -14672.39 -342089.92 -14834.423 313.46246 313.46246 73085.649 73085.649 -514.46226 -521.27889 15000 -338248.44 -14667.841 -341952.59 -14828.468 310.74433 310.74433 73089.61 73089.61 -103.92284 -105.29982 Loop time of 644.89 on 1 procs for 1000 steps with 4000 atoms Performance: 0.134 ns/day, 179.136 hours/ns, 1.551 timesteps/s 58.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 544.63 | 544.63 | 544.63 | 0.0 | 84.45 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15651 | 0.15651 | 0.15651 | 0.0 | 0.02 Output | 3.7909e-05 | 3.7909e-05 | 3.7909e-05 | 0.0 | 0.00 Modify | 100.07 | 100.07 | 100.07 | 0.0 | 15.52 Other | | 0.03795 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983814 ave 983814 max 983814 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983814 Ave neighs/atom = 245.953 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.186058753394, Press = 4.5165619677511 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -338248.44 -14667.841 -341952.59 -14828.468 310.74433 310.74433 73089.61 73089.61 -103.92284 -105.29982 16000 -338458.26 -14676.939 -342168.64 -14837.837 311.26713 311.26713 72969.957 72969.957 1361.752 1379.7952 Loop time of 633.657 on 1 procs for 1000 steps with 4000 atoms Performance: 0.136 ns/day, 176.016 hours/ns, 1.578 timesteps/s 59.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 536.07 | 536.07 | 536.07 | 0.0 | 84.60 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15225 | 0.15225 | 0.15225 | 0.0 | 0.02 Output | 3.9101e-05 | 3.9101e-05 | 3.9101e-05 | 0.0 | 0.00 Modify | 97.369 | 97.369 | 97.369 | 0.0 | 15.37 Other | | 0.06837 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 983732 ave 983732 max 983732 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 983732 Ave neighs/atom = 245.933 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.014972064369, Press = -2.45575842183619 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 618.6 | 618.6 | 618.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -338458.26 -14676.939 -342168.64 -14837.837 311.26713 311.26713 72969.957 72969.957 1361.752 1379.7952 17000 -338337.37 -14671.697 -342082.14 -14834.085 314.15153 314.15153 73079.964 73079.964 -331.34765 -335.73801 Loop time of 627.144 on 1 procs for 1000 steps with 4000 atoms Performance: 0.138 ns/day, 174.207 hours/ns, 1.595 timesteps/s 60.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 529.94 | 529.94 | 529.94 | 0.0 | 84.50 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16564 | 0.16564 | 0.16564 | 0.0 | 0.03 Output | 3.1948e-05 | 3.1948e-05 | 3.1948e-05 | 0.0 | 0.00 Modify | 97.005 | 97.005 | 97.005 | 0.0 | 15.47 Other | | 0.03029 | | | 0.00 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 984376 ave 984376 max 984376 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 984376 Ave neighs/atom = 246.094 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T313.15.out" else "print 'not_converged' file output/vol_T313.15.out" print '${V}' file output/vol_T313.15.out 73064.5135867459 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0