RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
BFGS: 9 10:57:16 -8.557144 0.001942BFGS: 10 10:57:16 -8.557144 0.000070BFGS: 11 10:57:17 -8.557144 0.000005BFGS: 12 10:57:17 -8.557144 0.000000BFGS: 13 10:57:18 -8.557144 0.000000Minimization converged after 13 steps.Maximum force component: 3.1359868844238444e-32 eV/AngstromMaximum stress component: 7.724817625491574e-11 eV/Angstrom^3==== Minimized structure obtained from ASE ====symbols = ['Fe', 'Fe']basis = [[0.33333333 0.66666667 0.25 ] [0.66666666 0.33333334 0.75 ]]cellpar = Cell([[2.5442148200625545, -3.805606476110671e-17, -1.96454143475406e-36], [-1.2721074100312773, 2.2033546668590263, -1.749339889048863e-36], [5.489822977589137e-36, -4.811883569622181e-35, 4.138920533190713]])forces = [[-3.13598688e-32 1.81056287e-32 -2.65709033e-34] [ 3.13598688e-32 -1.81056287e-32 2.65709033e-34]]stress = [-1.50164518e-11 -1.50164518e-11 -7.72481763e-11 -8.10961454e-33 1.56069605e-33 3.32096365e-27]energy per atom = -4.27857201499418===============================================Parameter sets [0] relaxed to duplicate structures, attempting to write only one of them.
output/pipeline.stderr:
-----------------------
--------------------------------------------------------------------------Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 194, in <module> relax_proto_des=aflow.get_prototype(RELAX_POSCAR_PATH.format(i)) File "/work2/08773/bwaters/stampede2/bwaters/job-4df612a1-11ce-4397-bd77-f823978a0ce8-007-74c21ef4-6f54-4efb-9317-ce481bf1b1f6/TE_179376621761_000-and-SM_656517352485_000-1682976315/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 361, in get_prototype output=self.aflow_command([command]) File "/work2/08773/bwaters/stampede2/bwaters/job-4df612a1-11ce-4397-bd77-f823978a0ce8-007-74c21ef4-6f54-4efb-9317-ce481bf1b1f6/TE_179376621761_000-and-SM_656517352485_000-1682976315/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/usr/lib/python3.8/subprocess.py", line 858, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1639, in _execute_child self.pid = _posixsubprocess.fork_exec(OSError: [Errno 12] Cannot allocate memoryCommand exited with non-zero status 1{"realtime":40.29,"usertime":48.24,"systime":50.63,"memmax":158800,"memavg":0}
output/kim.log:
---------------
2023-05-03:10:57:18CDT * 1 * information * 0x3a537d0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Collections'.2023-05-03:10:57:18CDT * 2 * information * 0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3a537d0'.2023-05-03:10:57:18CDT * 3 * information * 0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:57:18CDT * 0 * information * 0x3a537d0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:57:18CDT * 0 * information * 0x3a54a70 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:57:18CDT * 1 * information * 0x3a54a70 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x3a537d0_Collections'.2023-05-03:10:57:18CDT * 2 * information * 0x3a537d0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3a54a70'.2023-05-03:10:57:18CDT * 3 * information * 0x3a537d0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:57:18CDT * 1 * information * 0x3a537d0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-03:10:57:18CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3a537d0'.2023-05-03:10:57:18CDT * 3 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:57:18CDT * 0 * information * 0x3a537d0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:57:18CDT * 0 * information * 0x3a54a70 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:57:18CDT * 1 * information * 0x3a54a70 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x3a537d0_Collections'.2023-05-03:10:57:18CDT * 2 * information * 0x3a537d0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3a54a70'.2023-05-03:10:57:18CDT * 3 * information * 0x3a537d0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:57:18CDT * 1 * information * 0x3a537d0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-03:10:57:18CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3a537d0'.2023-05-03:10:57:19CDT * 0 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:57:27CDT * 0 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.