AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "2d" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.6666666666666666 0.3333333333333333 0.25 ] ] } "reservoir-wyckoff-species" { "source-value" [ "Re" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/anvil/scratch/x-bwaters/jobs/jobs/d7c8121e-662f-492c-a290-8a9989e459ba-007/TE_197485947906_001-and-MO_680820064987_001-1752099108/staged_job_files/repository/te/VacancyFormationMigration_hcp_Re__TE_197485947906_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/d7c8121e-662f-492c-a290-8a9989e459ba-007/TE_197485947906_001-and-MO_680820064987_001-1752099108/staged_job_files/repository/te/VacancyFormationMigration_hcp_Re__TE_197485947906_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/d7c8121e-662f-492c-a290-8a9989e459ba-007/TE_197485947906_001-and-MO_680820064987_001-1752099108/staged_job_files/repository/te/VacancyFormationMigration_hcp_Re__TE_197485947906_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/d7c8121e-662f-492c-a290-8a9989e459ba-007/TE_197485947906_001-and-MO_680820064987_001-1752099108/staged_job_files/repository/te/VacancyFormationMigration_hcp_Re__TE_197485947906_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/d7c8121e-662f-492c-a290-8a9989e459ba-007/TE_197485947906_001-and-MO_680820064987_001-1752099108/staged_job_files/repository/te/VacancyFormationMigration_hcp_Re__TE_197485947906_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/d7c8121e-662f-492c-a290-8a9989e459ba-007/TE_197485947906_001-and-MO_680820064987_001-1752099108/staged_job_files/repository/te/VacancyFormationMigration_hcp_Re__TE_197485947906_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/d7c8121e-662f-492c-a290-8a9989e459ba-007/TE_197485947906_001-and-MO_680820064987_001-1752099108/staged_job_files/repository/te/VacancyFormationMigration_hcp_Re__TE_197485947906_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/anvil/scratch/x-bwaters/jobs/jobs/d7c8121e-662f-492c-a290-8a9989e459ba-007/TE_197485947906_001-and-MO_680820064987_001-1752099108/staged_job_files/repository/te/VacancyFormationMigration_hcp_Re__TE_197485947906_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":57.84,"usertime":175.02,"systime":836.86,"memmax":825112,"memavg":0} output/kim.log: --------------- 2025-07-09:18:56:04EDT * 0 * information * 0x55ae8050f620_0x55ae7dd309a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae8050f620 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae80511cd0_0x55ae8050e0a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae80511cd0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae7e0b0b30_0x55ae80510910 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae7e0b0b30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae80562250_0x55ae7e0af5b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae80562250 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae805647b0_0x55ae7e0b1e20 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae805647b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae7323c4a0_0x55ae80563250 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae7323c4a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae7323e4e0_0x55ae80565aa0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae7323e4e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae8ae577d0_0x55ae7323cf60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae8ae577d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae8ae597a0_0x55ae7323f7d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae8ae597a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae8ae5c010_0x55ae8ae58220 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:18:56:04EDT * 0 * information * 0x55ae8ae5c010 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------