RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
[-1.13748241e-09 6.31420960e-32 -7.50022023e-11] [-1.13748241e-09 3.15710480e-32 7.50022023e-11] [ 1.13748241e-09 1.26284192e-31 7.50022023e-11] [-1.60389431e-09 2.32256267e-46 -8.42483671e-10] [ 1.60389431e-09 -2.32256267e-46 -8.42483671e-10] [ 1.60389431e-09 -6.31420960e-32 8.42483671e-10] [-1.60389431e-09 2.32256267e-46 8.42483671e-10] [ 1.38841712e-09 1.26284192e-31 -1.81329046e-09] [-1.38841712e-09 3.15710480e-32 -1.81329046e-09] [-1.38841712e-09 -2.52568384e-31 1.81329046e-09] [ 1.38841712e-09 3.47281528e-31 1.81329046e-09] [-4.12309454e-10 3.15710480e-32 -1.17977101e-10] [ 4.12309454e-10 3.15710480e-32 -1.17977101e-10] [ 4.12309454e-10 -6.61018818e-32 1.17977101e-10] [-4.12309454e-10 1.26284192e-31 1.17977101e-10]]stress = [ 1.43370351e-10 8.19163186e-11 1.32956111e-11 0.00000000e+00 0.00000000e+00 -8.40353873e-33]energy per atom = -0.3559259935969932===============================================Parameter sets [0] relaxed to duplicate structures, attempting to write only one of them.
output/pipeline.stderr:
-----------------------
Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 194, in <module> relax_proto_des=aflow.get_prototype(RELAX_POSCAR_PATH.format(i)) File "/work2/08773/bwaters/stampede2/bwaters/job-3a5997ec-d182-462c-8e51-815d96158b00-007-3e1f6cf3-adb0-4010-8168-68c01764b5dc/TE_215009453476_000-and-MO_956135237832_000-1683309213/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 361, in get_prototype output=self.aflow_command([command]) File "/work2/08773/bwaters/stampede2/bwaters/job-3a5997ec-d182-462c-8e51-815d96158b00-007-3e1f6cf3-adb0-4010-8168-68c01764b5dc/TE_215009453476_000-and-MO_956135237832_000-1683309213/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/usr/lib/python3.8/subprocess.py", line 858, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1639, in _execute_child self.pid = _posixsubprocess.fork_exec(OSError: [Errno 12] Cannot allocate memoryCommand exited with non-zero status 1{"realtime":305.66,"usertime":332.47,"systime":152.74,"memmax":105568,"memavg":0}
output/kim.log:
---------------
2023-05-08:17:29:08CDT * 0 * information * 0x28a5010_0x2bc3d80 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x28a5010 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2bc4de0_0x28fa860 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2bc4de0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2bae810_0x2baf730 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2bae810 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2a5a7e0_0x2a5b720 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2a5a7e0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2953900_0x2954960 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2953900 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2d2f7e0_0x2d30860 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2d2f7e0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2e1c610_0x2e1d6c0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 0 * information * 0x2e1c610 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 5 * information * 0x2ec94e0_0x2eca560 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:08CDT * 5 * information * 0x2ec94e0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:18CDT * 0 * information * 0x2b57190_0x2b581f0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:18CDT * 0 * information * 0x2b57190 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:18CDT * 0 * information * 0x27d6b60_0x27d6dd0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:17:29:18CDT * 0 * information * 0x27d6b60 * KIM_LogImplementation.cpp:120 * Log object destroyed.