# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 6.646233782172203*${_u_distance} variable latticeconst_converted equal 6.646233782172203*1 lattice fcc ${latticeconst_converted} lattice fcc 6.6462337821722 Lattice spacing in x,y,z = 6.6462338 6.6462338 6.6462338 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (66.462338 66.462338 66.462338) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0 0 0) to (66.462338 66.462338 66.462338) create_atoms CPU = 0.001 seconds variable mass_converted equal 131.293*${_u_mass} variable mass_converted equal 131.293*1 kim interactions Xe #=== BEGIN kim interactions ================================== pair_style kim EAM_Dynamo_SmirnovaKuskinStarikov_2013_UMoXe__MO_679329885632_006 pair_coeff * * Xe #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 131.293 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 293580.253221624 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 293580.253221624/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 293580.253221624/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 293580.253221624/(1*1*${_u_distance}) variable V0_metal equal 293580.253221624/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 293580.253221624*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 293580.253221624 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 313.15*${_u_temperature} variable temp_converted equal 313.15*1 variable Tdamp_converted equal 0.01*${_u_time} variable Tdamp_converted equal 0.01*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 0.1*${_u_time} variable Pdamp_converted equal 0.1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 313.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.01 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.01 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.01 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.01 iso 0 0 0.1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 1000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 1000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 1000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "313.15 - 1.0" variable T_up equal "313.15 + 1.0" variable P_low equal "0.0 - 5.0" variable P_up equal "0.0 + 5.0" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM Project: doi:10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_679329885632_006#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 1 steps, delay = 0 steps, check = yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.1960961 ghost atom cutoff = 8.1960961 binsize = 4.098048, bins = 17 17 17 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.776 | 3.776 | 3.776 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 285.63545 285.63545 123.76467 123.76467 313.15 313.15 293580.25 293580.25 6000.3438 6000.3438 1000 348.95563 348.95563 187.27454 187.27454 312.78302 312.78302 578302.02 578302.02 9.9808512 9.9808512 Loop time of 2.04875 on 1 procs for 1000 steps with 4000 atoms Performance: 42.172 ns/day, 0.569 hours/ns, 488.103 timesteps/s, 1.952 Matom-step/s 95.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1.6952 | 1.6952 | 1.6952 | 0.0 | 82.74 Neigh | 0.148 | 0.148 | 0.148 | 0.0 | 7.22 Comm | 0.022234 | 0.022234 | 0.022234 | 0.0 | 1.09 Output | 0.00015104 | 0.00015104 | 0.00015104 | 0.0 | 0.01 Modify | 0.16398 | 0.16398 | 0.16398 | 0.0 | 8.00 Other | | 0.01915 | | | 0.93 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2845 ave 2845 max 2845 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 59680 ave 59680 max 59680 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 59680 Ave neighs/atom = 14.92 Neighbor list builds = 29 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.030275706917, Press = 12.094091969232 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 1 steps, delay = 0 steps, check = yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.1960961 ghost atom cutoff = 8.1960961 binsize = 4.098048, bins = 21 21 21 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.413 | 3.413 | 3.413 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 348.95563 348.95563 187.27454 187.27454 312.78302 312.78302 578302.02 578302.02 9.9808512 9.9808512 2000 294.43169 294.43169 133.86728 133.86728 310.62275 310.62275 827600.28 827600.28 8.5598911 8.5598911 Loop time of 1.92046 on 1 procs for 1000 steps with 4000 atoms Performance: 44.989 ns/day, 0.533 hours/ns, 520.707 timesteps/s, 2.083 Matom-step/s 92.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1.5464 | 1.5464 | 1.5464 | 0.0 | 80.52 Neigh | 0.11185 | 0.11185 | 0.11185 | 0.0 | 5.82 Comm | 0.019574 | 0.019574 | 0.019574 | 0.0 | 1.02 Output | 0.00019218 | 0.00019218 | 0.00019218 | 0.0 | 0.01 Modify | 0.21842 | 0.21842 | 0.21842 | 0.0 | 11.37 Other | | 0.02406 | | | 1.25 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2472 ave 2472 max 2472 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 42192 ave 42192 max 42192 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 42192 Ave neighs/atom = 10.548 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.099590520283, Press = 10.4852317743354 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 1 steps, delay = 0 steps, check = yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.1960961 ghost atom cutoff = 8.1960961 binsize = 4.098048, bins = 23 23 23 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.427 | 3.427 | 3.427 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 294.43169 294.43169 133.86728 133.86728 310.62275 310.62275 827600.28 827600.28 8.5598911 8.5598911 3000 249.24008 249.24008 88.15571 88.15571 311.62863 311.62863 1359870.3 1359870.3 13.038672 13.038672 Loop time of 1.46544 on 1 procs for 1000 steps with 4000 atoms Performance: 58.958 ns/day, 0.407 hours/ns, 682.387 timesteps/s, 2.730 Matom-step/s 98.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1.1287 | 1.1287 | 1.1287 | 0.0 | 77.02 Neigh | 0.12123 | 0.12123 | 0.12123 | 0.0 | 8.27 Comm | 0.016822 | 0.016822 | 0.016822 | 0.0 | 1.15 Output | 0.00010606 | 0.00010606 | 0.00010606 | 0.0 | 0.01 Modify | 0.18069 | 0.18069 | 0.18069 | 0.0 | 12.33 Other | | 0.01785 | | | 1.22 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2025 ave 2025 max 2025 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 27062 ave 27062 max 27062 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 27062 Ave neighs/atom = 6.7655 Neighbor list builds = 31 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.968287243955, Press = 11.5847987769046 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 1 steps, delay = 0 steps, check = yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.1960961 ghost atom cutoff = 8.1960961 binsize = 4.098048, bins = 28 28 28 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.477 | 3.477 | 3.477 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 249.24008 249.24008 88.15571 88.15571 311.62863 311.62863 1359870.3 1359870.3 13.038672 13.038672 4000 214.94335 214.94335 51.10914 51.10914 316.94839 316.94839 2989393.5 2989393.5 16.056572 16.056572 Loop time of 1.05029 on 1 procs for 1000 steps with 4000 atoms Performance: 82.263 ns/day, 0.292 hours/ns, 952.121 timesteps/s, 3.808 Matom-step/s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0.73322 | 0.73322 | 0.73322 | 0.0 | 69.81 Neigh | 0.12996 | 0.12996 | 0.12996 | 0.0 | 12.37 Comm | 0.01408 | 0.01408 | 0.01408 | 0.0 | 1.34 Output | 6.0444e-05 | 6.0444e-05 | 6.0444e-05 | 0.0 | 0.01 Modify | 0.15686 | 0.15686 | 0.15686 | 0.0 | 14.94 Other | | 0.0161 | | | 1.53 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 1490 ave 1490 max 1490 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 14378 ave 14378 max 14378 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 14378 Ave neighs/atom = 3.5945 Neighbor list builds = 56 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.941910728692, Press = 12.7591643211918 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 1 steps, delay = 0 steps, check = yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.1960961 ghost atom cutoff = 8.1960961 binsize = 4.098048, bins = 36 36 36 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.599 | 3.599 | 3.599 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 214.94335 214.94335 51.10914 51.10914 316.94839 316.94839 2989393.5 2989393.5 16.056572 16.056572 5000 189.91457 189.91457 27.924988 27.924988 313.37983 313.37983 9693370.1 9693370.1 9.2746278 9.2746278 Loop time of 0.919147 on 1 procs for 1000 steps with 4000 atoms Performance: 94.000 ns/day, 0.255 hours/ns, 1087.966 timesteps/s, 4.352 Matom-step/s 98.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0.54173 | 0.54173 | 0.54173 | 0.0 | 58.94 Neigh | 0.18884 | 0.18884 | 0.18884 | 0.0 | 20.54 Comm | 0.01454 | 0.01454 | 0.01454 | 0.0 | 1.58 Output | 5.8189e-05 | 5.8189e-05 | 5.8189e-05 | 0.0 | 0.01 Modify | 0.15768 | 0.15768 | 0.15768 | 0.0 | 17.16 Other | | 0.0163 | | | 1.77 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 993 ave 993 max 993 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 6700 ave 6700 max 6700 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 6700 Ave neighs/atom = 1.675 Neighbor list builds = 110 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.996374886851, Press = 12.7127626728217 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 1 steps, delay = 0 steps, check = yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.1960961 ghost atom cutoff = 8.1960961 binsize = 4.098048, bins = 53 53 53 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.077 | 4.077 | 4.077 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 189.91457 189.91457 27.924988 27.924988 313.37983 313.37983 9693370.1 9693370.1 9.2746278 9.2746278 6000 178.85141 178.85141 16.453246 16.453246 314.17026 314.17026 41481214 41481214 2.9568765 2.9568765 Loop time of 1.0877 on 1 procs for 1000 steps with 4000 atoms Performance: 79.434 ns/day, 0.302 hours/ns, 919.371 timesteps/s, 3.677 Matom-step/s 98.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0.45226 | 0.45226 | 0.45226 | 0.0 | 41.58 Neigh | 0.43423 | 0.43423 | 0.43423 | 0.0 | 39.92 Comm | 0.019664 | 0.019664 | 0.019664 | 0.0 | 1.81 Output | 8.543e-05 | 8.543e-05 | 8.543e-05 | 0.0 | 0.01 Modify | 0.16115 | 0.16115 | 0.16115 | 0.0 | 14.82 Other | | 0.02031 | | | 1.87 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 614 ave 614 max 614 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 3416 ave 3416 max 3416 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 3416 Ave neighs/atom = 0.854 Neighbor list builds = 201 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.992084815429, Press = 11.352216011248 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 1 steps, delay = 0 steps, check = yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.1960961 ghost atom cutoff = 8.1960961 binsize = 4.098048, bins = 85 85 85 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 6.111 | 6.111 | 6.111 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 178.85141 178.85141 16.453246 16.453246 314.17026 314.17026 41481214 41481214 2.9568765 2.9568765 7000 170.40718 170.40718 7.6909665 7.6909665 314.78554 314.78554 1.9531685e+08 1.9531685e+08 0.76967662 0.76967662 Loop time of 2.68544 on 1 procs for 1000 steps with 4000 atoms Performance: 32.173 ns/day, 0.746 hours/ns, 372.378 timesteps/s, 1.490 Matom-step/s 98.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0.46675 | 0.46675 | 0.46675 | 0.0 | 17.38 Neigh | 1.9731 | 1.9731 | 1.9731 | 0.0 | 73.47 Comm | 0.032927 | 0.032927 | 0.032927 | 0.0 | 1.23 Output | 0.00010529 | 0.00010529 | 0.00010529 | 0.0 | 0.00 Modify | 0.17779 | 0.17779 | 0.17779 | 0.0 | 6.62 Other | | 0.03479 | | | 1.30 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 349 ave 349 max 349 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1898 ave 1898 max 1898 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1898 Ave neighs/atom = 0.4745 Neighbor list builds = 320 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.982720839709, Press = 9.75823348068565 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 1 steps, delay = 0 steps, check = yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.1960961 ghost atom cutoff = 8.1960961 binsize = 4.098048, bins = 142 142 142 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 15.45 | 15.45 | 15.45 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 170.40718 170.40718 7.6909665 7.6909665 314.78554 314.78554 1.9531685e+08 1.9531685e+08 0.76967662 0.76967662 8000 164.57322 164.57322 2.6305557 2.6305557 313.28906 313.28906 9.7362314e+08 9.7362314e+08 0.16906407 0.16906407 Loop time of 8.41325 on 1 procs for 1000 steps with 4000 atoms Performance: 10.270 ns/day, 2.337 hours/ns, 118.860 timesteps/s, 475.440 katom-step/s 92.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0.44554 | 0.44554 | 0.44554 | 0.0 | 5.30 Neigh | 7.6723 | 7.6723 | 7.6723 | 0.0 | 91.19 Comm | 0.067825 | 0.067825 | 0.067825 | 0.0 | 0.81 Output | 9.8475e-05 | 9.8475e-05 | 9.8475e-05 | 0.0 | 0.00 Modify | 0.18532 | 0.18532 | 0.18532 | 0.0 | 2.20 Other | | 0.04218 | | | 0.50 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 195 ave 195 max 195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 788 ave 788 max 788 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 788 Ave neighs/atom = 0.197 Neighbor list builds = 500 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" jump SELF unstable print "ERROR: System volume ${V_metal} A^3 has become larger than ${V0_metal_times1000} A^3. Aborting calculation." ERROR: System volume 973623138.411392 A^3 has become larger than 293580253.221624 A^3. Aborting calculation. Total wall time: 0:00:20