[c404-001.stampede2.tacc.utexas.edu:212046] mca_base_component_repository_open: unable to open mca_shmem_mmap: /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_shmem_mmap.so: failed to map segment from shared object (ignored) [c404-001.stampede2.tacc.utexas.edu:212046] mca_base_component_repository_open: unable to open mca_shmem_posix: /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_shmem_posix.so: failed to map segment from shared object (ignored) [c404-001.stampede2.tacc.utexas.edu:212046] mca_base_component_repository_open: unable to open mca_shmem_sysv: /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_shmem_sysv.so: failed to map segment from shared object (ignored) -------------------------------------------------------------------------- It looks like opal_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during opal_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): opal_shmem_base_select failed --> Returned value -1 instead of OPAL_SUCCESS -------------------------------------------------------------------------- -------------------------------------------------------------------------- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): opal_init failed --> Returned value Error (-1) instead of ORTE_SUCCESS -------------------------------------------------------------------------- -------------------------------------------------------------------------- It looks like MPI_INIT failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during MPI_INIT; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): ompi_mpi_init: ompi_rte_init failed --> Returned "Error" (-1) instead of "Success" (0) -------------------------------------------------------------------------- *** An error occurred in MPI_Init *** on a NULL communicator *** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, *** and potentially your MPI job) [c404-001.stampede2.tacc.utexas.edu:212046] Local abort before MPI_INIT completed completed successfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed! Command exited with non-zero status 1 {"realtime":28.09,"usertime":34.71,"systime":32.81,"memmax":145476,"memavg":0}