AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [2.92750098] Angstroms, c = [4.78058909] Angstroms, c/a = 1.632993 Total energy: -31.446826317381426 eV Cohesive energy: -7.861706579345356 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/02825ef6-685b-4d9a-b7f5-8f70bfc6562d-007/TE_272523306576_005-and-MO_568033730744_001-1752181526/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/02825ef6-685b-4d9a-b7f5-8f70bfc6562d-007/TE_272523306576_005-and-MO_568033730744_001-1752181526/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/02825ef6-685b-4d9a-b7f5-8f70bfc6562d-007/TE_272523306576_005-and-MO_568033730744_001-1752181526/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/02825ef6-685b-4d9a-b7f5-8f70bfc6562d-007/TE_272523306576_005-and-MO_568033730744_001-1752181526/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/02825ef6-685b-4d9a-b7f5-8f70bfc6562d-007/TE_272523306576_005-and-MO_568033730744_001-1752181526/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/02825ef6-685b-4d9a-b7f5-8f70bfc6562d-007/TE_272523306576_005-and-MO_568033730744_001-1752181526/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":5.36,"usertime":5.44,"systime":6.87,"memmax":97000,"memavg":0} output/kim.log: --------------- 2025-07-10:16:13:25CDT * 2 * information * 0x55894e7a4490_0x55894e64dc80 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x55894e64dc80'.2025-07-10:16:13:25CDT * 3 * information * 0x55894e7a4490_0x55894e64dc80 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-10:16:13:25CDT * 4 * information * 0x55894e7a4490_0x55894e64dc80 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-10:16:13:25CDT * 0 * information * 0x55894e39b7c0_0x55894e39c840 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e39b7c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e39c9a0_0x55894e39c1c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e39c9a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e3b5860_0x55894e39c8f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e3b5860 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e39c6e0_0x55894e39c790 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e39c6e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e3bae50_0x55894e3b6620 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e3bae50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e5cfa70_0x55894e3b9520 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 0 * information * 0x55894e5cfa70 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 5 * information * 0x55894e67af50_0x55894e5a2650 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 2 * information * 0x55894e67af50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:25CDT * 2 * warning * 0x55894e7a4490 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-10:16:13:28CDT * 0 * information * 0x55894e7a4490_0x55894e64dc80 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:13:28CDT * 0 * information * 0x55894e7a4490 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------