AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [2.92750098] Angstroms, c = [4.78058909] Angstroms, c/a = 1.632993 Total energy: -31.446826317381426 eV Cohesive energy: -7.861706579345356 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/a4a8c22b-a9e7-4bcb-9467-5397c46135d8-007/TE_272523306576_005-and-MO_950828638160_001-1751906673/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/a4a8c22b-a9e7-4bcb-9467-5397c46135d8-007/TE_272523306576_005-and-MO_950828638160_001-1751906673/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/a4a8c22b-a9e7-4bcb-9467-5397c46135d8-007/TE_272523306576_005-and-MO_950828638160_001-1751906673/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/a4a8c22b-a9e7-4bcb-9467-5397c46135d8-007/TE_272523306576_005-and-MO_950828638160_001-1751906673/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/a4a8c22b-a9e7-4bcb-9467-5397c46135d8-007/TE_272523306576_005-and-MO_950828638160_001-1751906673/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/a4a8c22b-a9e7-4bcb-9467-5397c46135d8-007/TE_272523306576_005-and-MO_950828638160_001-1751906673/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ta__TE_272523306576_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":6.51,"usertime":5.72,"systime":7.50,"memmax":101976,"memavg":0} output/kim.log: --------------- 2025-07-07:11:49:48CDT * 2 * information * 0x55a9f0a2c570_0x55a9f069b740 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x55a9f069b740'.2025-07-07:11:49:48CDT * 3 * information * 0x55a9f0a2c570_0x55a9f069b740 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-07:11:49:48CDT * 4 * information * 0x55a9f0a2c570_0x55a9f069b740 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-07:11:49:48CDT * 5 * information * 0x55a9eff747c0_0x55a9eff758b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 2 * information * 0x55a9eff747c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 5 * information * 0x55a9eff75a10_0x55a9eff751c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 2 * information * 0x55a9eff75a10 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 5 * information * 0x55a9eff92660_0x55a9eff75960 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 2 * information * 0x55a9eff92660 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 5 * information * 0x55a9f016f100_0x55a9eff77570 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 2 * information * 0x55a9f016f100 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 5 * information * 0x55a9f04d1d90_0x55a9eff934a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 2 * information * 0x55a9f04d1d90 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 5 * information * 0x55a9f069a730_0x55a9f030a4b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 2 * information * 0x55a9f069a730 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 5 * information * 0x55a9f06c8b00_0x55a9f04d2e20 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 2 * information * 0x55a9f06c8b00 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:48CDT * 2 * warning * 0x55a9f0a2c570 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-07:11:49:52CDT * 0 * information * 0x55a9f0a2c570_0x55a9f069b740 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:49:52CDT * 0 * information * 0x55a9f0a2c570 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------