Traceback (most recent call last):
  File "/disk2/worker/repository/td/GrainBoundaryCubicCrystalSymmetricTiltRelaxedEnergyVsAngle__TD_410381120771_002/compute_isolated_atom_energy.py", line 82, in compute_isolated_atom_energy
    ["lammps", "-i", lammps_input_file], shell=False, stdout=fnull
  File "/usr/lib/python3.6/subprocess.py", line 311, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['lammps', '-i', 'output/isolated_atom_energy.lammps']' returned non-zero exit status 1.

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/disk2/worker/repository/td/GrainBoundaryCubicCrystalSymmetricTiltRelaxedEnergyVsAngle__TD_410381120771_002/runner", line 81, in <module>
    output_dir="output", model_name=model_name, species=species
  File "/disk2/worker/repository/td/GrainBoundaryCubicCrystalSymmetricTiltRelaxedEnergyVsAngle__TD_410381120771_002/compute_isolated_atom_energy.py", line 91, in compute_isolated_atom_energy
    raise RuntimeError("LAMMPS did not exit properly:\n" + extrainfo)
RuntimeError: LAMMPS did not exit properly:
LAMMPS log file output/isolated_atom_energy.lammps.log not found
Command exited with non-zero status 1

{"usertime":0.24,"memmax":38844,"memavg":0}