* Error (Neighbor List) : "Collision of atoms 1 and 80. Their distance is 8.3371e-07. " : 205:kimpy/neighlist/neighbor_list.cpp * Error (Neighbor List) : "Collision of atoms 13 and 103. Their distance is 8.92237e-06. " : 205:kimpy/neighlist/neighbor_list.cpp Traceback (most recent call last): File "/mmfs1/scratch/bwaters2/bwaters/job-bd95918d-6529-46a7-9f44-892953bfa307-007-5bddaafe-086b-4ff6-9249-8a925db04464/TE_293358858154_000-and-MO_105008013807_000-1682978202/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 516, in run raise CalledProcessError(retcode, process.args, subprocess.CalledProcessError: Command 'aflow --np=1 --compare_materials -D compare --no_scale_volume --screen_only --quiet --print=json' returned non-zero exit status 50. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 181, in comparison=aflow.compare_materials_dir(COMPARE_DIR) File "/mmfs1/scratch/bwaters2/bwaters/job-bd95918d-6529-46a7-9f44-892953bfa307-007-5bddaafe-086b-4ff6-9249-8a925db04464/TE_293358858154_000-and-MO_105008013807_000-1682978202/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 309, in compare_materials_dir output=self.aflow_command([ File "/mmfs1/scratch/bwaters2/bwaters/job-bd95918d-6529-46a7-9f44-892953bfa307-007-5bddaafe-086b-4ff6-9249-8a925db04464/TE_293358858154_000-and-MO_105008013807_000-1682978202/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 272, in aflow_command raise RuntimeError("ERROR: unexpected error from aflow command %s , error code = %d\nstderr: %s" % (cmd_str, exc.returncode, exc.stderr)) RuntimeError: ERROR: unexpected error from aflow command aflow --np=1 --compare_materials -D compare --no_scale_volume --screen_only --quiet --print=json , error code = 50 stderr: Command exited with non-zero status 1 {"realtime":8.56,"usertime":9.79,"systime":25.01,"memmax":298864,"memavg":0}