-------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c408-023 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c408-023 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c408-023 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c408-023 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c408-023 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c408-023 Local device: hfi1_0 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c408-023 Local device: hfi1_0 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c408-023 Local device: hfi1_0 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c408-023 Local device: hfi1_0 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c408-023 Local device: hfi1_0 -------------------------------------------------------------------------- terminate called after throwing an instance of 'terminate called after throwing an instance of 'terminate called after throwing an instance of 'terminate called after throwing an instance of 'terminate called after throwing an instance of 'std::bad_allocstd::bad_allocstd::bad_allocstd::bad_allocstd::bad_alloc' ' ' ' ' what(): std::bad_alloc what(): what(): what(): what(): std::bad_allocstd::bad_allocstd::bad_allocstd::bad_alloc[c408-023:112888] *** Process received signal *** [c408-023:112888] Signal: Aborted (6) [c408-023:112888] Signal code: (-6) [c408-023:112891] *** Process received signal *** [c408-023:112880] *** Process received signal *** [c408-023:112881] *** Process received signal *** [c408-023:112889] *** Process received signal *** [c408-023:112891] Signal: Aborted (6) [c408-023:112891] Signal code: (-6) [c408-023:112880] Signal: Aborted (6) [c408-023:112880] Signal code: (-6) [c408-023:112881] Signal: Aborted (6) [c408-023:112881] Signal code: (-6) [c408-023:112889] Signal: Aborted (6) [c408-023:112889] Signal code: (-6) [c408-023:112888] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x2ae55e64a090] [c408-023:112891] [c408-023:112880] [c408-023:112888] [c408-023:112881] [c408-023:112889] [ 0] [ 0] [ 1] [ 0] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x2b0e349cd090] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x2ae55e64a00b] /lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x2b862855a090] /lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x2ae65fbac090] [c408-023:112891] /lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x2b69a985e090] [c408-023:112888] [c408-023:112880] [c408-023:112881] [ 1] [c408-023:112889] [ 2] [ 1] [ 1] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x2b0e349cd00b] /lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x2ae55e629859] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x2b862855a00b] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x2ae65fbac00b] [c408-023:112891] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x2b69a985e00b] [c408-023:112888] [c408-023:112880] [c408-023:112881] [ 2] [c408-023:112889] [ 3] [ 2] [ 2] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x2b0e349ac859] /lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x2b8628539859] /lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x2b69a983d859] /lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x2ae65fb8b859] [c408-023:112891] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e911)[0x2ae55e4a8911] [c408-023:112880] [c408-023:112889] [c408-023:112881] [ 3] [c408-023:112888] [ 3] [ 3] [ 3] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e911)[0x2b0e3482b911] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e911)[0x2b86283b8911] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e911)[0x2b69a96bc911] [c408-023:112891] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa38c)[0x2ae55e4b438c] [c408-023:112880] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e911)[0x2ae65fa0a911] [c408-023:112889] [ 4] [ 4] [c408-023:112888] [ 4] [c408-023:112881] [ 5] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa38c)[0x2b69a96c838c] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa38c)[0x2b0e3483738c] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa38c)[0x2b86283c438c] [c408-023:112889] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa3f7)[0x2ae55e4b43f7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa38c)[0x2ae65fa1638c] [c408-023:112891] [c408-023:112880] [ 5] [c408-023:112888] [c408-023:112881] [ 5] [ 5] [ 6] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa3f7)[0x2b69a96c83f7] [c408-023:112889] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa3f7)[0x2b86283c43f7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa3f7)[0x2b0e348373f7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa6a9)[0x2ae55e4b46a9] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa3f7)[0x2ae65fa163f7] [ 6] [c408-023:112880] [c408-023:112891] [c408-023:112888] [c408-023:112881] [ 6] [ 6] [ 7] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa6a9)[0x2b69a96c86a9] [c408-023:112889] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e522)[0x2ae55e4a8522] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa6a9)[0x2ae65fa166a9] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa6a9)[0x2b86283c46a9] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa6a9)[0x2b0e348376a9] [c408-023:112888] [c408-023:112881] [c408-023:112880] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e522)[0x2b69a96bc522] [c408-023:112891] [ 8] [ 7] [ 7] [ 7] [c408-023:112889] [ 8] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e522)[0x2b0e3482b522] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e522)[0x2ae65fa0a522] [c408-023:112891] [c408-023:112881] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e522)[0x2b86283b8522] [ 8] /usr/local/lib/liblammps.so.0(_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOS5_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_+0x25)[0x2ae55dd31625] [ 8] [c408-023:112880] /usr/local/lib/liblammps.so.0(_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOS5_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_+0x25)[0x2b69a8f45625] [c408-023:112888] [ 8] [c408-023:112889] [ 9] [ 9] /usr/local/lib/liblammps.so.0(_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOS5_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_+0x25)[0x2ae65f293625] /usr/local/lib/liblammps.so.0(_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOS5_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_+0x25)[0x2b0e340b4625] [c408-023:112881] /usr/local/lib/liblammps.so.0(_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOS5_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_+0x25)[0x2b8627c41625] [c408-023:112891] /usr/local/lib/liblammps.so.0(_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_+0x144)[0x2ae55dd31bf4] [ 9] /usr/local/lib/liblammps.so.0(_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_+0x144)[0x2b69a8f45bf4] [c408-023:112880] [ 9] [c408-023:112888] [c408-023:112889] [ 9] [10] [10] /usr/local/lib/liblammps.so.0(_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_+0x144)[0x2ae65f293bf4] [c408-023:112881] [10] /usr/local/lib/liblammps.so.0(_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_+0x144)[0x2b8627c41bf4] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6LAMMPS14init_pkg_listsEv+0x129de)[0x2ae55dd1f06e] /usr/local/lib/liblammps.so.0(_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixEOS5_+0x144)[0x2b0e340b4bf4] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6LAMMPS14init_pkg_listsEv+0x12bb8)[0x2b69a8f33248] [c408-023:112880] [c408-023:112888] [c408-023:112891] [c408-023:112889] [10] [10] [11] [11] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6LAMMPS14init_pkg_listsEv+0x129de)[0x2ae65f28106e] [c408-023:112881] [11] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6LAMMPS14init_pkg_listsEv+0x13233)[0x2b8627c2f8c3] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6LAMMPS14init_pkg_listsEv+0x129de)[0x2b0e340a206e] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6LAMMPSC2EiPPcP19ompi_communicator_t+0x194)[0x2ae55dd2b754] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6LAMMPSC2EiPPcP19ompi_communicator_t+0x194)[0x2b69a8f3f754] [c408-023:112880] [c408-023:112891] [c408-023:112888] [c408-023:112889] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6LAMMPSC2EiPPcP19ompi_communicator_t+0x194)[0x2ae65f28d754] [11] [11] [12] [12] [c408-023:112881] lammps(+0x1365)[0x55a856c79365] lammps(+0x1365)[0x561b1a605365] [12] [c408-023:112888] [c408-023:112889] lammps(+0x1365)[0x55f442344365] [13] [13] [c408-023:112881] [13] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x2ae55e62b083] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x2b69a983f083] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x2ae65fb8d083] [c408-023:112888] [c408-023:112889] [c408-023:112881] [14] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6LAMMPSC2EiPPcP19ompi_communicator_t+0x194)[0x2b8627c3b754] [14] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6LAMMPSC2EiPPcP19ompi_communicator_t+0x194)[0x2b0e340ae754] lammps(+0x13ee)[0x55a856c793ee] [14] [c408-023:112880] lammps(+0x13ee)[0x561b1a6053ee] [c408-023:112891] [c408-023:112888] *** End of error message *** lammps(+0x13ee)[0x55f4423443ee] [12] [c408-023:112889] *** End of error message *** [12] lammps(+0x1365)[0x5588383f8365] [c408-023:112881] *** End of error message *** lammps(+0x1365)[0x55696b14b365] [c408-023:112880] [c408-023:112891] [13] [13] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x2b862853b083] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x2b0e349ae083] [c408-023:112880] [c408-023:112891] [14] [14] lammps(+0x13ee)[0x5588383f83ee] lammps(+0x13ee)[0x55696b14b3ee] [c408-023:112880] *** End of error message *** [c408-023:112891] *** End of error message *** Aborted Aborted Aborted Aborted Aborted Traceback (most recent call last): File "../../td/LinearThermalExpansionCoeffCubic__TD_522633393614_001/runner", line 343, in alpha = compute_alpha(lmpvolfile, T) File "../../td/LinearThermalExpansionCoeffCubic__TD_522633393614_001/runner", line 180, in compute_alpha with open(fin, "r") as f: FileNotFoundError: [Errno 2] No such file or directory: 'output/vol_T253.15.out' Command exited with non-zero status 1 {"realtime":4.46,"usertime":4.24,"systime":11.77,"memmax":59508,"memavg":0}