RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
[6.66666667e-01 3.33333333e-01 8.69164265e-01] [3.33333333e-01 6.66666667e-01 3.69164265e-01]]cellpar = Cell([[2.7513698714259145, -6.540128029527994e-18, 1.691760624591832e-36], [-1.3756849357129572, 2.3827562038619665, 1.4799170088339072e-36], [5.262710410253581e-35, 1.6762867329661895e-34, 34.425999914939446]])forces = [[ 0.00000000e+00 0.00000000e+00 0.00000000e+00] [-2.03479512e-31 3.91596503e-32 1.39474081e-62] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00] [ 2.13215672e-98 6.79137887e-98 1.39474950e-62] [ 1.74088027e-30 -5.09075454e-31 -2.23015946e-09] [ 6.78265040e-31 7.04873706e-31 -2.23015946e-09] [-1.76348910e-30 5.48235105e-31 2.23015946e-09] [-6.78265040e-31 -7.04873706e-31 2.23015946e-09] [-5.42612032e-31 9.39831608e-31 -2.23015946e-09] [ 5.65220867e-31 -3.52436853e-31 -2.23015946e-09] [ 5.42612032e-31 -9.39831608e-31 2.23015946e-09] [-5.42612032e-31 3.13277203e-31 2.23015946e-09]]stress = [ 1.12169122e-11 1.12169122e-11 1.47277860e-20 -3.73238735e-43 -3.23204072e-43 -6.78384548e-28]energy per atom = -5.3150005840887635===============================================Parameter sets [0] relaxed to duplicate structures, attempting to write only one of them.
output/pipeline.stderr:
-----------------------
--------------------------------------------------------------------------Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 194, in <module> relax_proto_des=aflow.get_prototype(RELAX_POSCAR_PATH.format(i)) File "/work2/08773/bwaters/stampede2/bwaters/job-4c67bcf8-afc6-4b01-986f-fa9a4b8d5c90-007-03109a00-8a10-4b29-a294-75d6df99dfe6/TE_326828152130_000-and-SM_720598599889_000-1682975542/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 361, in get_prototype output=self.aflow_command([command]) File "/work2/08773/bwaters/stampede2/bwaters/job-4c67bcf8-afc6-4b01-986f-fa9a4b8d5c90-007-03109a00-8a10-4b29-a294-75d6df99dfe6/TE_326828152130_000-and-SM_720598599889_000-1682975542/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/usr/lib/python3.8/subprocess.py", line 858, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1639, in _execute_child self.pid = _posixsubprocess.fork_exec(OSError: [Errno 12] Cannot allocate memoryCommand exited with non-zero status 1{"realtime":41.75,"usertime":56.80,"systime":84.92,"memmax":114064,"memavg":0}
output/kim.log:
---------------
2023-05-03:10:53:02CDT * 1 * information * 0x346f990 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Collections'.2023-05-03:10:53:02CDT * 2 * information * 0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x346f990'.2023-05-03:10:53:02CDT * 3 * information * 0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:53:02CDT * 0 * information * 0x346f990 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:53:02CDT * 0 * information * 0x3478fa0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:53:02CDT * 1 * information * 0x3478fa0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x346f990_Collections'.2023-05-03:10:53:02CDT * 2 * information * 0x346f990_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3478fa0'.2023-05-03:10:53:02CDT * 3 * information * 0x346f990_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:53:02CDT * 1 * information * 0x346f990 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-03:10:53:02CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x346f990'.2023-05-03:10:53:02CDT * 3 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:53:02CDT * 0 * information * 0x346f990 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:53:02CDT * 0 * information * 0x3478fa0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:53:03CDT * 0 * information * 0x3478fa0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x346f990_Collections'.2023-05-03:10:53:03CDT * 1 * information * 0x346f990_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3478fa0'.2023-05-03:10:53:03CDT * 2 * information * 0x346f990_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:53:03CDT * 0 * information * 0x346f990 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-03:10:53:03CDT * 1 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x346f990'.2023-05-03:10:53:03CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:53:13CDT * 0 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.