# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 3.61472986638546*${_u_distance} variable latticeconst_converted equal 3.61472986638546*1 lattice fcc ${latticeconst_converted} lattice fcc 3.61472986638546 Lattice spacing in x,y,z = 3.6147299 3.6147299 3.6147299 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (36.147299 36.147299 36.147299) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (36.147299 36.147299 36.147299) create_atoms CPU = 0.003 seconds variable mass_converted equal 63.546*${_u_mass} variable mass_converted equal 63.546*1 kim_interactions Cu WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Cu #=== BEGIN kim interactions ================================== pair_style kim EAM_NN_Johnson_1988_Cu__MO_887933271505_003 WARNING: KIM Model does not provide 'partialParticleVirial'; virial per atom will be zero (src/KIM/pair_kim.cpp:1161) pair_coeff * * Cu #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 63.546 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 47231.0436657989 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 47231.0436657989/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 47231.0436657989/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 47231.0436657989/(1*1*${_u_distance}) variable V0_metal equal 47231.0436657989/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 47231.0436657989*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 47231.0436657989 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 313.15*${_u_temperature} variable temp_converted equal 313.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 313.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "313.15 - 0.2" variable T_up equal "313.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_887933271505_003#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.236 | 4.236 | 4.236 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -13998.129 -13998.129 -14160 -14160 313.15 313.15 47231.044 47231.044 3660.6641 3660.6641 1000 -13934.503 -13934.503 -14098.194 -14098.194 316.67278 316.67278 47883.248 47883.248 1114.3468 1114.3468 Loop time of 30.8365 on 1 procs for 1000 steps with 4000 atoms Performance: 2.802 ns/day, 8.566 hours/ns, 32.429 timesteps/s 78.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.742 | 29.742 | 29.742 | 0.0 | 96.45 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.19072 | 0.19072 | 0.19072 | 0.0 | 0.62 Output | 0.00026707 | 0.00026707 | 0.00026707 | 0.0 | 0.00 Modify | 0.80254 | 0.80254 | 0.80254 | 0.0 | 2.60 Other | | 0.1009 | | | 0.33 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841.00 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 216000.0 ave 216000 max 216000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 216000 Ave neighs/atom = 54.000000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -13934.503 -13934.503 -14098.194 -14098.194 316.67278 316.67278 47883.248 47883.248 1114.3468 1114.3468 2000 -13949.552 -13949.552 -14106.29 -14106.29 303.21869 303.21869 47866.816 47866.816 94.074461 94.074461 Loop time of 29.9567 on 1 procs for 1000 steps with 4000 atoms Performance: 2.884 ns/day, 8.321 hours/ns, 33.381 timesteps/s 79.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 28.944 | 28.944 | 28.944 | 0.0 | 96.62 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16428 | 0.16428 | 0.16428 | 0.0 | 0.55 Output | 0.00022168 | 0.00022168 | 0.00022168 | 0.0 | 0.00 Modify | 0.7542 | 0.7542 | 0.7542 | 0.0 | 2.52 Other | | 0.09358 | | | 0.31 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5205.00 ave 5205 max 5205 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 220180.0 ave 220180 max 220180 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 220180 Ave neighs/atom = 55.045000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -13949.552 -13949.552 -14106.29 -14106.29 303.21869 303.21869 47866.816 47866.816 94.074461 94.074461 3000 -13933.715 -13933.715 -14097.881 -14097.881 317.59041 317.59041 47935.893 47935.893 -901.35392 -901.35392 Loop time of 31.2862 on 1 procs for 1000 steps with 4000 atoms Performance: 2.762 ns/day, 8.691 hours/ns, 31.963 timesteps/s 78.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.22 | 30.22 | 30.22 | 0.0 | 96.59 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.1687 | 0.1687 | 0.1687 | 0.0 | 0.54 Output | 0.00022327 | 0.00022327 | 0.00022327 | 0.0 | 0.00 Modify | 0.79875 | 0.79875 | 0.79875 | 0.0 | 2.55 Other | | 0.09847 | | | 0.31 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5255.00 ave 5255 max 5255 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219498.0 ave 219498 max 219498 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219498 Ave neighs/atom = 54.874500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -13933.715 -13933.715 -14097.881 -14097.881 317.59041 317.59041 47935.893 47935.893 -901.35392 -901.35392 4000 -13940.069 -13940.069 -14099.443 -14099.443 308.31883 308.31883 47905.821 47905.821 -374.59395 -374.59395 Loop time of 30.8917 on 1 procs for 1000 steps with 4000 atoms Performance: 2.797 ns/day, 8.581 hours/ns, 32.371 timesteps/s 78.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.834 | 29.834 | 29.834 | 0.0 | 96.58 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16865 | 0.16865 | 0.16865 | 0.0 | 0.55 Output | 0.00022057 | 0.00022057 | 0.00022057 | 0.0 | 0.00 Modify | 0.79059 | 0.79059 | 0.79059 | 0.0 | 2.56 Other | | 0.09797 | | | 0.32 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5217.00 ave 5217 max 5217 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219446.0 ave 219446 max 219446 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219446 Ave neighs/atom = 54.861500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -13940.069 -13940.069 -14099.443 -14099.443 308.31883 308.31883 47905.821 47905.821 -374.59395 -374.59395 5000 -13938.704 -13938.704 -14100.606 -14100.606 313.21033 313.21033 47899.124 47899.124 -196.86325 -196.86325 Loop time of 31.2996 on 1 procs for 1000 steps with 4000 atoms Performance: 2.760 ns/day, 8.694 hours/ns, 31.949 timesteps/s 79.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.221 | 30.221 | 30.221 | 0.0 | 96.55 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17255 | 0.17255 | 0.17255 | 0.0 | 0.55 Output | 0.0001975 | 0.0001975 | 0.0001975 | 0.0 | 0.00 Modify | 0.80785 | 0.80785 | 0.80785 | 0.0 | 2.58 Other | | 0.09798 | | | 0.31 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5196.00 ave 5196 max 5196 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219062.0 ave 219062 max 219062 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219062 Ave neighs/atom = 54.765500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 309.831059282121, Press = -240.917548010173 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -13938.704 -13938.704 -14100.606 -14100.606 313.21033 313.21033 47899.124 47899.124 -196.86325 -196.86325 6000 -13935.402 -13935.402 -14098.709 -14098.709 315.92813 315.92813 47877.126 47877.126 698.61401 698.61401 Loop time of 30.4655 on 1 procs for 1000 steps with 4000 atoms Performance: 2.836 ns/day, 8.463 hours/ns, 32.824 timesteps/s 78.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.416 | 29.416 | 29.416 | 0.0 | 96.55 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16492 | 0.16492 | 0.16492 | 0.0 | 0.54 Output | 0.00019943 | 0.00019943 | 0.00019943 | 0.0 | 0.00 Modify | 0.78803 | 0.78803 | 0.78803 | 0.0 | 2.59 Other | | 0.09678 | | | 0.32 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5246.00 ave 5246 max 5246 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219338.0 ave 219338 max 219338 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219338 Ave neighs/atom = 54.834500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.347762800943, Press = -43.9800763612417 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -13935.402 -13935.402 -14098.709 -14098.709 315.92813 315.92813 47877.126 47877.126 698.61401 698.61401 7000 -13939.416 -13939.416 -14100.092 -14100.092 310.83873 310.83873 47812.802 47812.802 2269.7329 2269.7329 Loop time of 30.5984 on 1 procs for 1000 steps with 4000 atoms Performance: 2.824 ns/day, 8.500 hours/ns, 32.681 timesteps/s 78.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.553 | 29.553 | 29.553 | 0.0 | 96.58 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16396 | 0.16396 | 0.16396 | 0.0 | 0.54 Output | 0.00019361 | 0.00019361 | 0.00019361 | 0.0 | 0.00 Modify | 0.78507 | 0.78507 | 0.78507 | 0.0 | 2.57 Other | | 0.09615 | | | 0.31 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5239.00 ave 5239 max 5239 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219228.0 ave 219228 max 219228 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219228 Ave neighs/atom = 54.807000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.042710904795, Press = -4.9237082360176 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -13939.416 -13939.416 -14100.092 -14100.092 310.83873 310.83873 47812.802 47812.802 2269.7329 2269.7329 8000 -13938.045 -13938.045 -14101.912 -14101.912 317.01194 317.01194 47813.908 47813.908 2213.1316 2213.1316 Loop time of 31.979 on 1 procs for 1000 steps with 4000 atoms Performance: 2.702 ns/day, 8.883 hours/ns, 31.271 timesteps/s 78.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.869 | 30.869 | 30.869 | 0.0 | 96.53 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17526 | 0.17526 | 0.17526 | 0.0 | 0.55 Output | 0.00024158 | 0.00024158 | 0.00024158 | 0.0 | 0.00 Modify | 0.83601 | 0.83601 | 0.83601 | 0.0 | 2.61 Other | | 0.09886 | | | 0.31 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5282.00 ave 5282 max 5282 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219380.0 ave 219380 max 219380 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219380 Ave neighs/atom = 54.845000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.203829476377, Press = 5.60161883952393 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -13938.045 -13938.045 -14101.912 -14101.912 317.01194 317.01194 47813.908 47813.908 2213.1316 2213.1316 9000 -13939.776 -13939.776 -14099.857 -14099.857 309.68848 309.68848 47860.342 47860.342 911.28279 911.28279 Loop time of 31.6213 on 1 procs for 1000 steps with 4000 atoms Performance: 2.732 ns/day, 8.784 hours/ns, 31.624 timesteps/s 78.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.525 | 30.525 | 30.525 | 0.0 | 96.53 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17538 | 0.17538 | 0.17538 | 0.0 | 0.55 Output | 0.00024134 | 0.00024134 | 0.00024134 | 0.0 | 0.00 Modify | 0.82418 | 0.82418 | 0.82418 | 0.0 | 2.61 Other | | 0.09631 | | | 0.30 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5217.00 ave 5217 max 5217 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219584.0 ave 219584 max 219584 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219584 Ave neighs/atom = 54.896000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.181212473801, Press = 6.90090021366341 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -13939.776 -13939.776 -14099.857 -14099.857 309.68848 309.68848 47860.342 47860.342 911.28279 911.28279 10000 -13935.054 -13935.054 -14099.259 -14099.259 317.66633 317.66633 47913.8 47913.8 -435.47115 -435.47115 Loop time of 30.8601 on 1 procs for 1000 steps with 4000 atoms Performance: 2.800 ns/day, 8.572 hours/ns, 32.404 timesteps/s 78.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.816 | 29.816 | 29.816 | 0.0 | 96.62 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.1631 | 0.1631 | 0.1631 | 0.0 | 0.53 Output | 0.00018445 | 0.00018445 | 0.00018445 | 0.0 | 0.00 Modify | 0.78481 | 0.78481 | 0.78481 | 0.0 | 2.54 Other | | 0.09566 | | | 0.31 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5152.00 ave 5152 max 5152 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219646.0 ave 219646 max 219646 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219646 Ave neighs/atom = 54.911500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.264881644097, Press = 4.83150976678634 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.230 | 4.230 | 4.230 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -13935.054 -13935.054 -14099.259 -14099.259 317.66633 317.66633 47913.8 47913.8 -435.47115 -435.47115 11000 -13935.418 -13935.418 -14094.61 -14094.61 307.9687 307.9687 47918.604 47918.604 -502.77407 -502.77407 Loop time of 30.7774 on 1 procs for 1000 steps with 4000 atoms Performance: 2.807 ns/day, 8.549 hours/ns, 32.491 timesteps/s 78.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.734 | 29.734 | 29.734 | 0.0 | 96.61 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16052 | 0.16052 | 0.16052 | 0.0 | 0.52 Output | 0.00022287 | 0.00022287 | 0.00022287 | 0.0 | 0.00 Modify | 0.78562 | 0.78562 | 0.78562 | 0.0 | 2.55 Other | | 0.09726 | | | 0.32 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5110.00 ave 5110 max 5110 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219584.0 ave 219584 max 219584 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219584 Ave neighs/atom = 54.896000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.549239168655, Press = -2.12244612115953 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -13935.418 -13935.418 -14094.61 -14094.61 307.9687 307.9687 47918.604 47918.604 -502.77407 -502.77407 12000 -13935.411 -13935.411 -14100.7 -14100.7 319.76335 319.76335 47931.073 47931.073 -1069.1003 -1069.1003 Loop time of 31.9527 on 1 procs for 1000 steps with 4000 atoms Performance: 2.704 ns/day, 8.876 hours/ns, 31.296 timesteps/s 78.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.83 | 30.83 | 30.83 | 0.0 | 96.49 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17945 | 0.17945 | 0.17945 | 0.0 | 0.56 Output | 0.00021081 | 0.00021081 | 0.00021081 | 0.0 | 0.00 Modify | 0.84404 | 0.84404 | 0.84404 | 0.0 | 2.64 Other | | 0.09938 | | | 0.31 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5245.00 ave 5245 max 5245 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 218904.0 ave 218904 max 218904 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 218904 Ave neighs/atom = 54.726000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.476076569306, Press = -4.43363378872321 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -13935.411 -13935.411 -14100.7 -14100.7 319.76335 319.76335 47931.073 47931.073 -1069.1003 -1069.1003 13000 -13937.007 -13937.007 -14098.499 -14098.499 312.41803 312.41803 47888.131 47888.131 267.22492 267.22492 Loop time of 30.8485 on 1 procs for 1000 steps with 4000 atoms Performance: 2.801 ns/day, 8.569 hours/ns, 32.416 timesteps/s 78.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.791 | 29.791 | 29.791 | 0.0 | 96.57 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16556 | 0.16556 | 0.16556 | 0.0 | 0.54 Output | 0.00018368 | 0.00018368 | 0.00018368 | 0.0 | 0.00 Modify | 0.79687 | 0.79687 | 0.79687 | 0.0 | 2.58 Other | | 0.09508 | | | 0.31 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5151.00 ave 5151 max 5151 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219064.0 ave 219064 max 219064 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219064 Ave neighs/atom = 54.766000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.412026072508, Press = -10.3384856679227 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -13937.007 -13937.007 -14098.499 -14098.499 312.41803 312.41803 47888.131 47888.131 267.22492 267.22492 14000 -13940.171 -13940.171 -14102.447 -14102.447 313.93429 313.93429 47851.82 47851.82 1040.6839 1040.6839 Loop time of 30.4739 on 1 procs for 1000 steps with 4000 atoms Performance: 2.835 ns/day, 8.465 hours/ns, 32.815 timesteps/s 77.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.453 | 29.453 | 29.453 | 0.0 | 96.65 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15829 | 0.15829 | 0.15829 | 0.0 | 0.52 Output | 0.0002917 | 0.0002917 | 0.0002917 | 0.0 | 0.00 Modify | 0.76747 | 0.76747 | 0.76747 | 0.0 | 2.52 Other | | 0.09527 | | | 0.31 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5234.00 ave 5234 max 5234 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219098.0 ave 219098 max 219098 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219098 Ave neighs/atom = 54.774500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.309976537386, Press = -5.82926410048465 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -13940.171 -13940.171 -14102.447 -14102.447 313.93429 313.93429 47851.82 47851.82 1040.6839 1040.6839 15000 -13945.97 -13945.97 -14105.456 -14105.456 308.53794 308.53794 47817.716 47817.716 1660.3725 1660.3725 Loop time of 31.0274 on 1 procs for 1000 steps with 4000 atoms Performance: 2.785 ns/day, 8.619 hours/ns, 32.230 timesteps/s 78.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.974 | 29.974 | 29.974 | 0.0 | 96.60 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16466 | 0.16466 | 0.16466 | 0.0 | 0.53 Output | 0.0001968 | 0.0001968 | 0.0001968 | 0.0 | 0.00 Modify | 0.79124 | 0.79124 | 0.79124 | 0.0 | 2.55 Other | | 0.09762 | | | 0.31 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5256.00 ave 5256 max 5256 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219400.0 ave 219400 max 219400 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219400 Ave neighs/atom = 54.850000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.20797092413, Press = -1.96425490570595 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -13945.97 -13945.97 -14105.456 -14105.456 308.53794 308.53794 47817.716 47817.716 1660.3725 1660.3725 16000 -13937.387 -13937.387 -14101.534 -14101.534 317.55403 317.55403 47887.006 47887.006 16.373325 16.373325 Loop time of 30.3345 on 1 procs for 1000 steps with 4000 atoms Performance: 2.848 ns/day, 8.426 hours/ns, 32.966 timesteps/s 78.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.316 | 29.316 | 29.316 | 0.0 | 96.64 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15858 | 0.15858 | 0.15858 | 0.0 | 0.52 Output | 0.00018266 | 0.00018266 | 0.00018266 | 0.0 | 0.00 Modify | 0.76239 | 0.76239 | 0.76239 | 0.0 | 2.51 Other | | 0.09728 | | | 0.32 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5346.00 ave 5346 max 5346 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219462.0 ave 219462 max 219462 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219462 Ave neighs/atom = 54.865500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.276808557989, Press = 0.423545054018942 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.232 | 4.232 | 4.232 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -13937.387 -13937.387 -14101.534 -14101.534 317.55403 317.55403 47887.006 47887.006 16.373325 16.373325 17000 -13934.987 -13934.987 -14097.624 -14097.624 314.63164 314.63164 47895.828 47895.828 31.269875 31.269875 Loop time of 30.136 on 1 procs for 1000 steps with 4000 atoms Performance: 2.867 ns/day, 8.371 hours/ns, 33.183 timesteps/s 78.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.119 | 29.119 | 29.119 | 0.0 | 96.63 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15671 | 0.15671 | 0.15671 | 0.0 | 0.52 Output | 0.00019153 | 0.00019153 | 0.00019153 | 0.0 | 0.00 Modify | 0.76296 | 0.76296 | 0.76296 | 0.0 | 2.53 Other | | 0.09714 | | | 0.32 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5271.00 ave 5271 max 5271 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219408.0 ave 219408 max 219408 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219408 Ave neighs/atom = 54.852000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.111114268147, Press = -0.477027957546607 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.5 ghost atom cutoff = 5.5 binsize = 2.75, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.5 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.231 | 4.231 | 4.231 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -13934.987 -13934.987 -14097.624 -14097.624 314.63164 314.63164 47895.828 47895.828 31.269875 31.269875 18000 -13944.031 -13944.031 -14102.544 -14102.544 306.65435 306.65435 47877.414 47877.414 42.780306 42.780306 Loop time of 31.4226 on 1 procs for 1000 steps with 4000 atoms Performance: 2.750 ns/day, 8.729 hours/ns, 31.824 timesteps/s 77.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.344 | 30.344 | 30.344 | 0.0 | 96.57 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16684 | 0.16684 | 0.16684 | 0.0 | 0.53 Output | 0.00022736 | 0.00022736 | 0.00022736 | 0.0 | 0.00 Modify | 0.81259 | 0.81259 | 0.81259 | 0.0 | 2.59 Other | | 0.09938 | | | 0.32 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5234.00 ave 5234 max 5234 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 219258.0 ave 219258 max 219258 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 219258 Ave neighs/atom = 54.814500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T313.15.out" else "print 'not_converged' file output/vol_T313.15.out" print '${V}' file output/vol_T313.15.out 47893.0252357406 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0