RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
FIRE: 1551 18:26:53 -1657.896865* 0.0010FIRE: 1552 18:26:53 -1657.896865* 0.0002FIRE: 1553 18:26:53 -1657.896865* 0.0001FIRE: 1554 18:26:54 -1657.896865* 0.0000FIRE: 1555 18:26:54 -1657.896865* 0.0001FIRE: 1556 18:26:54 -1657.896865* 0.0001FIRE: 1557 18:26:54 -1657.896865* 0.0001FIRE: 1558 18:26:54 -1657.896865* 0.0000FIRE: 1559 18:26:54 -1657.896865* 0.0000FIRE: 1560 18:26:54 -1657.896865* 0.0000FIRE: 1561 18:26:54 -1657.896865* 0.0000FIRE: 1562 18:26:54 -1657.896865* 0.0000FIRE: 1563 18:26:54 -1657.896865* 0.0000FIRE: 1564 18:26:54 -1657.896865* 0.0000FIRE: 1565 18:26:54 -1657.896865* 0.0000FIRE: 1566 18:26:55 -1657.896865* 0.0000FIRE: 1567 18:26:55 -1657.896865* 0.0000Completed sweep of surfaces
output/pipeline.stderr:
-----------------------
WARNING: There was an error initializing an OpenFabrics device. Local host: c415-032 Local device: hfi1_0--------------------------------------------------------------------------/usr/local/lib/python3.8/dist-packages/ase/atoms.py:967: VisibleDeprecationWarning: Use get_global_number_of_atoms() instead warnings.warn('Use get_global_number_of_atoms() instead',Traceback (most recent call last): File "../../td/SurfaceEnergyCubicCrystalBrokenBondFit__TD_955413365818_004/runner", line 391, in <module> f.write(template.render(**results)) File "/usr/local/lib/python3.8/dist-packages/jinja2/environment.py", line 1301, in render self.environment.handle_exception() File "/usr/local/lib/python3.8/dist-packages/jinja2/environment.py", line 936, in handle_exception raise rewrite_traceback_stack(source=source) File "/work2/08773/bwaters/stampede2/bwaters/job-86b4065f-800c-48b7-a6ef-9ada7d14e5eb-007-197c4b1c-f8cb-4770-be7c-f0aa6433d62d/TE_336897536534_004-and-SM_682749584055_000-1688067008/staged_job_files/repository/te/SurfaceEnergyCubicCrystalBrokenBondFit_bcc_Mo__TE_336897536534_004/results.edn.tpl", line 6, in top-level template code "source-value" ["@<crystal_structure>@"]jinja2.exceptions.UndefinedError: 'crystal_structure' is undefinedCommand exited with non-zero status 1{"realtime":3998.66,"usertime":49333.13,"systime":201326.46,"memmax":257232,"memavg":0}
output/kim.log:
---------------
2023-07-10:18:24:00CDT * 0 * information * 0x32b0be0 * KIM_LogImplementation.cpp:107 * Log object created. Default verbosity level is 'information'.2023-07-10:18:24:00CDT * 1 * information * 0x32b0be0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Collections'.2023-07-10:18:24:00CDT * 2 * information * 0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x32b0be0'.2023-07-10:18:24:00CDT * 3 * information * 0_Collections * KIM_LogImplementation.cpp:119 * Log object destroyed.2023-07-10:18:24:00CDT * 0 * information * 0x32b0be0 * KIM_LogImplementation.cpp:107 * Log object created. Default verbosity level is 'information'.2023-07-10:18:24:00CDT * 0 * information * 0x342d1e0 * KIM_LogImplementation.cpp:107 * Log object created. Default verbosity level is 'information'.2023-07-10:18:24:00CDT * 1 * information * 0x342d1e0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x32b0be0_Collections'.2023-07-10:18:24:00CDT * 2 * information * 0x32b0be0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x342d1e0'.2023-07-10:18:24:00CDT * 3 * information * 0x32b0be0_Collections * KIM_LogImplementation.cpp:119 * Log object destroyed.2023-07-10:18:24:00CDT * 1 * information * 0x32b0be0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-07-10:18:24:00CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x32b0be0'.2023-07-10:18:24:00CDT * 3 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:119 * Log object destroyed.2023-07-10:18:24:00CDT * 0 * information * 0x32b0be0 * KIM_LogImplementation.cpp:107 * Log object created. Default verbosity level is 'information'.2023-07-10:18:24:00CDT * 0 * information * 0x348dc50 * KIM_LogImplementation.cpp:107 * Log object created. Default verbosity level is 'information'.2023-07-10:18:24:00CDT * 1 * information * 0x348dc50 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x32b0be0_Collections'.2023-07-10:18:24:00CDT * 2 * information * 0x32b0be0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x348dc50'.2023-07-10:18:24:00CDT * 3 * information * 0x32b0be0_Collections * KIM_LogImplementation.cpp:119 * Log object destroyed.2023-07-10:18:24:00CDT * 1 * information * 0x32b0be0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-07-10:18:24:00CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x32b0be0'.2023-07-10:18:26:55CDT * 0 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:119 * Log object destroyed.