RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
BFGS: 18 10:56:46 -29.475334 0.000000BFGS: 19 10:56:46 -29.475334 0.000000Minimization converged after 19 steps.Maximum force component: 9.980565768097999e-31 eV/AngstromMaximum stress component: 3.558589721009076e-10 eV/Angstrom^3==== Minimized structure obtained from ASE ====symbols = ['C', 'C', 'C', 'C']basis = [[8.06585423e-36 1.82593456e-36 2.50000000e-01] [0.00000000e+00 2.33786005e-35 7.50000000e-01] [3.33333333e-01 6.66666667e-01 2.50000000e-01] [6.66666667e-01 3.33333333e-01 7.50000000e-01]]cellpar = Cell([[2.5303740373093495, 3.05955338933364e-20, -1.3743617663840666e-37], [-1.2651870186546748, 2.19136819738649, -1.7977261296972063e-36], [-1.8509510044995976e-36, -3.9749002491565713e-35, 8.48057888683974]])forces = [[ 1.85666769e-72 3.98717678e-71 -8.50677126e-36] [ 9.98056577e-31 -5.76228233e-31 8.50677126e-36] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00]]stress = [-3.55858972e-10 -3.55858972e-10 -2.94300850e-11 -3.45444576e-36 -5.89103047e-47 1.22287146e-25]energy per atom = -7.368833549618651===============================================
output/pipeline.stderr:
-----------------------
Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 181, in <module> comparison=aflow.compare_materials_dir(COMPARE_DIR) File "/work2/08773/bwaters/stampede2/bwaters/job-5615a760-c7c4-44bd-bf88-0ad8be09584f-007-eb0e0e69-d0bd-4418-ac7b-9f54553dac19/TE_355331973316_000-and-MO_075279800195_001-1682977373/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 309, in compare_materials_dir output=self.aflow_command([ File "/work2/08773/bwaters/stampede2/bwaters/job-5615a760-c7c4-44bd-bf88-0ad8be09584f-007-eb0e0e69-d0bd-4418-ac7b-9f54553dac19/TE_355331973316_000-and-MO_075279800195_001-1682977373/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/usr/lib/python3.8/subprocess.py", line 858, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1639, in _execute_child self.pid = _posixsubprocess.fork_exec(OSError: [Errno 12] Cannot allocate memoryCommand exited with non-zero status 1{"realtime":18.26,"usertime":27.92,"systime":39.16,"memmax":99296,"memavg":0}
output/kim.log:
---------------
2023-05-03:10:56:47CDT * 0 * information * 0x2f545e0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:56:47CDT * 1 * information * 0x2f545e0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:56:47CDT * 0 * information * 0x2f545e0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:56:47CDT * 0 * information * 0x2f546f0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:56:47CDT * 1 * information * 0x2f546f0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x2f545e0_Collections'.2023-05-03:10:56:47CDT * 2 * information * 0x2f545e0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x2f546f0'.2023-05-03:10:56:47CDT * 1 * error * 0x2f545e0 * KIM_SharedLibrary.cpp:348 * SharedLibrary not open.2023-05-03:10:56:47CDT * 3 * information * 0x2f545e0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:56:47CDT * 0 * information * 0x2f546f0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:56:47CDT * 1 * information * 0x2f546f0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x2f545e0_0x2f546f0'.2023-05-03:10:56:47CDT * 2 * information * 0x2f545e0_0x2f546f0 * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x2f546f0'.2023-05-03:10:56:47CDT * 3 * information * 0x2f545e0_0x2f546f0 * meam_implementation.cpp:1606 * Register argument support status2023-05-03:10:56:47CDT * 0 * information * 0x2543ca0_0x29137a0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:56:47CDT * 0 * information * 0x2543ca0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:56:47CDT * 4 * information * 0x2f545e0_0x2f546f0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:56:47CDT * 2 * information * 0x2f545e0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:56:47CDT * 0 * information * 0x2910a60_0x290d3e0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:56:47CDT * 0 * information * 0x2910a60 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:56:47CDT * 0 * information * 0x239f100_0x239d2e0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:56:47CDT * 0 * information * 0x239f100 * KIM_LogImplementation.cpp:120 * Log object destroyed.