AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "2d" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.6666666666666666 0.3333333333333333 0.25 ] ] } "reservoir-wyckoff-species" { "source-value" [ "He" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/scratch.global/bwaters/jobs/1ebe1750-ab47-4a7d-a16c-a8ed6eaeda8c-007/TE_359521988045_001-and-MO_626183701337_001-1752183170/staged_job_files/repository/te/VacancyFormationMigration_hcp_He__TE_359521988045_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/scratch.global/bwaters/jobs/1ebe1750-ab47-4a7d-a16c-a8ed6eaeda8c-007/TE_359521988045_001-and-MO_626183701337_001-1752183170/staged_job_files/repository/te/VacancyFormationMigration_hcp_He__TE_359521988045_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/1ebe1750-ab47-4a7d-a16c-a8ed6eaeda8c-007/TE_359521988045_001-and-MO_626183701337_001-1752183170/staged_job_files/repository/te/VacancyFormationMigration_hcp_He__TE_359521988045_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/scratch.global/bwaters/jobs/1ebe1750-ab47-4a7d-a16c-a8ed6eaeda8c-007/TE_359521988045_001-and-MO_626183701337_001-1752183170/staged_job_files/repository/te/VacancyFormationMigration_hcp_He__TE_359521988045_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/1ebe1750-ab47-4a7d-a16c-a8ed6eaeda8c-007/TE_359521988045_001-and-MO_626183701337_001-1752183170/staged_job_files/repository/te/VacancyFormationMigration_hcp_He__TE_359521988045_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/1ebe1750-ab47-4a7d-a16c-a8ed6eaeda8c-007/TE_359521988045_001-and-MO_626183701337_001-1752183170/staged_job_files/repository/te/VacancyFormationMigration_hcp_He__TE_359521988045_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/1ebe1750-ab47-4a7d-a16c-a8ed6eaeda8c-007/TE_359521988045_001-and-MO_626183701337_001-1752183170/staged_job_files/repository/te/VacancyFormationMigration_hcp_He__TE_359521988045_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/scratch.global/bwaters/jobs/1ebe1750-ab47-4a7d-a16c-a8ed6eaeda8c-007/TE_359521988045_001-and-MO_626183701337_001-1752183170/staged_job_files/repository/te/VacancyFormationMigration_hcp_He__TE_359521988045_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":161.87,"usertime":274.42,"systime":1133.91,"memmax":844756,"memavg":0} output/kim.log: --------------- 2025-07-10:16:46:21CDT * 0 * information * 0x557c7c4be770_0x557c7d2cdf00 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c7c4be770 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c7d27d310_0x557c7cc9c6c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c7d27d310 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8b67b890_0x557c7ccb2cd0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8b67b890 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c7e696a30_0x557c7c9eacf0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c7e696a30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8a713240_0x557c8b67c6d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8a713240 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8a94cc70_0x557c7e697aa0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8a94cc70 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8b233a50_0x557c8a94c1a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8b233a50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8b46dd40_0x557c8ab85c10 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8b46dd40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8ba28130_0x557c8b234ac0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8ba28130 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8b905400_0x557c7e682db0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:46:21CDT * 0 * information * 0x557c8b905400 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------