-------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c001 Local adapter: mlx5_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c001 Local device: mlx5_0 -------------------------------------------------------------------------- -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c001 Local adapter: mlx5_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c001 Local device: mlx5_0 -------------------------------------------------------------------------- [c001:3684577] *** Process received signal *** [c001:3684577] Signal: Segmentation fault (11) [c001:3684577] Signal code: Address not mapped (1) [c001:3684577] Failing at address: 0x56376c000000 [c001:3684577] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f46fb50a090] [c001:3684577] [ 1] /lib/x86_64-linux-gnu/libc.so.6(cfree+0x52)[0x7f46fb561722] [c001:3684577] [ 2] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS8Variable9free_treeEPNS0_4TreeE+0x1c)[0x7f46fbf4b5cc] [c001:3684577] [ 3] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS8Variable12compute_atomEiiPdii+0x45f)[0x7f46fbf638ef] [c001:3684577] [ 4] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS10DumpCustom5countEv+0xc3)[0x7f46fbc9ed23] [c001:3684577] [ 5] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS4Dump5writeEv+0x809)[0x7f46fbc91ad9] [c001:3684577] [ 6] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6Output5setupEi+0xdb)[0x7f46fbe949fb] [c001:3684577] [ 7] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6Verlet5setupEi+0x36c)[0x7f46fbf73e0c] [c001:3684577] [ 8] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS3Run7commandEiPPc+0x6f0)[0x7f46fbf1a380] [c001:3684577] [ 9] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS5Input15execute_commandEv+0x91a)[0x7f46fbdd808a] [c001:3684577] [10] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS5Input4fileEv+0x17e)[0x7f46fbdd862e] [c001:3684577] [11] lammps(+0x132e)[0x56376c01632e] [c001:3684577] [12] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f46fb4eb083] [c001:3684577] [13] lammps(+0x13ae)[0x56376c0163ae] [c001:3684577] *** End of error message *** ../../td/CohesiveEnergyVsLatticeConstant__TD_554653289799_003/runner: line 234: 3684577 Segmentation fault (core dumped) lammps -in output/lammps.in > output/lammps.log {"realtime":3.05,"usertime":1.51,"systime":0.44,"memmax":77388,"memavg":0}