# Variables that can be adjusted by kim-lammps-preprocessor to switch unit sets for # Simulator Models variable _u_distance equal 1.0 variable _u_energy equal 1.0 variable _u_mass equal 1.0 variable _u_time equal 1.0 variable _u_pressure equal 1.0 variable _u_temperature equal 1.0 # This line may be swapped out by kim-lammps-preprocessor if running against a Simulator # Model whose atom_style is not 'atomic' atom_style atomic # periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 6.083469396829612*${_u_distance} variable latticeconst_converted equal 6.083469396829612*1 lattice fcc ${latticeconst_converted} lattice fcc 6.08346939682961 Lattice spacing in x,y,z = 6.08347 6.08347 6.08347 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (60.8347 60.8347 60.8347) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms create_atoms CPU = 0.0404181 secs variable mass_converted equal 87.62*${_u_mass} variable mass_converted equal 87.62*1 # specify which KIM Model to use pair_style kim Morse_Shifted_GirifalcoWeizer_1959MedCutoff_Sr__MO_964297938209_002 WARNING: KIM Model does not provide `partialParticleVirial'; virial per atom will be zero (src/KIM/pair_kim.cpp:1089) pair_coeff * * Sr mass 1 ${mass_converted} mass 1 87.62 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 225140.684924316 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 225140.684924316/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 225140.684924316/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 225140.684924316/(1*1*${_u_distance}) variable V0_metal equal 225140.684924316/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 225140.684924316*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 225140.684924316 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 17.4319 ghost atom cutoff = 17.4319 binsize = 8.71595, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 17.4319 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 9.433 | 9.433 | 9.433 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -6686.8958 -6686.8958 -6838.4284 -6838.4284 293.15 293.15 225140.68 225140.68 718.90495 718.90495 1000 -6517.8505 -6517.8505 -6670.2752 -6670.2752 294.87602 294.87602 230545.56 230545.56 -250.18865 -250.18865 Loop time of 83.7179 on 1 procs for 1000 steps with 4000 atoms Performance: 1.032 ns/day, 23.255 hours/ns, 11.945 timesteps/s 40.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 82.569 | 82.569 | 82.569 | 0.0 | 98.63 Neigh | 0.52234 | 0.52234 | 0.52234 | 0.0 | 0.62 Comm | 0.1487 | 0.1487 | 0.1487 | 0.0 | 0.18 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.3961 | 0.3961 | 0.3961 | 0.0 | 0.47 Other | | 0.08195 | | | 0.10 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51309e+06 ave 1.51309e+06 max 1.51309e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1513090 Ave neighs/atom = 378.272 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -6517.8505 -6517.8505 -6670.2752 -6670.2752 294.87602 294.87602 230545.56 230545.56 -250.18865 -250.18865 2000 -6524.7208 -6524.7208 -6681.0731 -6681.0731 302.47419 302.47419 229730.06 229730.06 35.68331 35.68331 Loop time of 84.9597 on 1 procs for 1000 steps with 4000 atoms Performance: 1.017 ns/day, 23.600 hours/ns, 11.770 timesteps/s 39.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 83.832 | 83.832 | 83.832 | 0.0 | 98.67 Neigh | 0.49609 | 0.49609 | 0.49609 | 0.0 | 0.58 Comm | 0.1475 | 0.1475 | 0.1475 | 0.0 | 0.17 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 0.4422 | 0.4422 | 0.4422 | 0.0 | 0.52 Other | | 0.0419 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51074e+06 ave 1.51074e+06 max 1.51074e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1510736 Ave neighs/atom = 377.684 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -6524.7208 -6524.7208 -6681.0731 -6681.0731 302.47419 302.47419 229730.06 229730.06 35.68331 35.68331 3000 -6532.41 -6532.41 -6687.103 -6687.103 299.26404 299.26404 229860.73 229860.73 -79.847271 -79.847271 Loop time of 83.2138 on 1 procs for 1000 steps with 4000 atoms Performance: 1.038 ns/day, 23.115 hours/ns, 12.017 timesteps/s 39.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 82.24 | 82.24 | 82.24 | 0.0 | 98.83 Neigh | 0.41056 | 0.41056 | 0.41056 | 0.0 | 0.49 Comm | 0.16682 | 0.16682 | 0.16682 | 0.0 | 0.20 Output | 4.4107e-05 | 4.4107e-05 | 4.4107e-05 | 0.0 | 0.00 Modify | 0.3543 | 0.3543 | 0.3543 | 0.0 | 0.43 Other | | 0.04184 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51062e+06 ave 1.51062e+06 max 1.51062e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1510616 Ave neighs/atom = 377.654 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -6532.41 -6532.41 -6687.103 -6687.103 299.26404 299.26404 229860.73 229860.73 -79.847271 -79.847271 4000 -6539.6842 -6539.6842 -6685.9485 -6685.9485 282.95817 282.95817 229354.68 229354.68 125.91354 125.91354 Loop time of 84.774 on 1 procs for 1000 steps with 4000 atoms Performance: 1.019 ns/day, 23.548 hours/ns, 11.796 timesteps/s 39.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 83.491 | 83.491 | 83.491 | 0.0 | 98.49 Neigh | 0.51935 | 0.51935 | 0.51935 | 0.0 | 0.61 Comm | 0.10712 | 0.10712 | 0.10712 | 0.0 | 0.13 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.57532 | 0.57532 | 0.57532 | 0.0 | 0.68 Other | | 0.08158 | | | 0.10 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51192e+06 ave 1.51192e+06 max 1.51192e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1511922 Ave neighs/atom = 377.981 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -6539.6842 -6539.6842 -6685.9485 -6685.9485 282.95817 282.95817 229354.68 229354.68 125.91354 125.91354 5000 -6524.9102 -6524.9102 -6678.3765 -6678.3765 296.89104 296.89104 230120.79 230120.79 -122.14921 -122.14921 Loop time of 83.48 on 1 procs for 1000 steps with 4000 atoms Performance: 1.035 ns/day, 23.189 hours/ns, 11.979 timesteps/s 39.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 82.376 | 82.376 | 82.376 | 0.0 | 98.68 Neigh | 0.43636 | 0.43636 | 0.43636 | 0.0 | 0.52 Comm | 0.15823 | 0.15823 | 0.15823 | 0.0 | 0.19 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.42722 | 0.42722 | 0.42722 | 0.0 | 0.51 Other | | 0.0819 | | | 0.10 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.50923e+06 ave 1.50923e+06 max 1.50923e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1509232 Ave neighs/atom = 377.308 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 301.378097889998, Press = -52.6236481930991 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -6524.9102 -6524.9102 -6678.3765 -6678.3765 296.89104 296.89104 230120.79 230120.79 -122.14921 -122.14921 6000 -6537.8202 -6537.8202 -6684.4525 -6684.4525 283.67003 283.67003 229250.23 229250.23 197.71023 197.71023 Loop time of 81.8345 on 1 procs for 1000 steps with 4000 atoms Performance: 1.056 ns/day, 22.732 hours/ns, 12.220 timesteps/s 40.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 80.689 | 80.689 | 80.689 | 0.0 | 98.60 Neigh | 0.50618 | 0.50618 | 0.50618 | 0.0 | 0.62 Comm | 0.22289 | 0.22289 | 0.22289 | 0.0 | 0.27 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.31405 | 0.31405 | 0.31405 | 0.0 | 0.38 Other | | 0.102 | | | 0.12 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51223e+06 ave 1.51223e+06 max 1.51223e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1512230 Ave neighs/atom = 378.058 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.326388828809, Press = -6.30114976715421 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -6537.8202 -6537.8202 -6684.4525 -6684.4525 283.67003 283.67003 229250.23 229250.23 197.71023 197.71023 7000 -6523.3537 -6523.3537 -6679.0403 -6679.0403 301.18631 301.18631 230468.7 230468.7 -292.101 -292.101 Loop time of 82.286 on 1 procs for 1000 steps with 4000 atoms Performance: 1.050 ns/day, 22.857 hours/ns, 12.153 timesteps/s 40.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 81.212 | 81.212 | 81.212 | 0.0 | 98.69 Neigh | 0.47105 | 0.47105 | 0.47105 | 0.0 | 0.57 Comm | 0.20048 | 0.20048 | 0.20048 | 0.0 | 0.24 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.38118 | 0.38118 | 0.38118 | 0.0 | 0.46 Other | | 0.02172 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51114e+06 ave 1.51114e+06 max 1.51114e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1511144 Ave neighs/atom = 377.786 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.184017247814, Press = 0.264232241712307 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -6523.3537 -6523.3537 -6679.0403 -6679.0403 301.18631 301.18631 230468.7 230468.7 -292.101 -292.101 8000 -6532.0527 -6532.0527 -6684.4141 -6684.4141 294.75357 294.75357 229270.7 229270.7 209.642 209.642 Loop time of 81.7475 on 1 procs for 1000 steps with 4000 atoms Performance: 1.057 ns/day, 22.708 hours/ns, 12.233 timesteps/s 40.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 80.478 | 80.478 | 80.478 | 0.0 | 98.45 Neigh | 0.58257 | 0.58257 | 0.58257 | 0.0 | 0.71 Comm | 0.228 | 0.228 | 0.228 | 0.0 | 0.28 Output | 2.5988e-05 | 2.5988e-05 | 2.5988e-05 | 0.0 | 0.00 Modify | 0.37727 | 0.37727 | 0.37727 | 0.0 | 0.46 Other | | 0.08208 | | | 0.10 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.5126e+06 ave 1.5126e+06 max 1.5126e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1512598 Ave neighs/atom = 378.149 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.468278602788, Press = -2.86360887608871 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -6532.0527 -6532.0527 -6684.4141 -6684.4141 294.75357 294.75357 229270.7 229270.7 209.642 209.642 9000 -6525.3519 -6525.3519 -6678.9134 -6678.9134 297.0751 297.0751 230156.04 230156.04 -151.95057 -151.95057 Loop time of 77.4235 on 1 procs for 1000 steps with 4000 atoms Performance: 1.116 ns/day, 21.507 hours/ns, 12.916 timesteps/s 42.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 76.425 | 76.425 | 76.425 | 0.0 | 98.71 Neigh | 0.44461 | 0.44461 | 0.44461 | 0.0 | 0.57 Comm | 0.21221 | 0.21221 | 0.21221 | 0.0 | 0.27 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.30014 | 0.30014 | 0.30014 | 0.0 | 0.39 Other | | 0.04176 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51193e+06 ave 1.51193e+06 max 1.51193e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1511928 Ave neighs/atom = 377.982 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.678206284913, Press = -0.217808041468585 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -6525.3519 -6525.3519 -6678.9134 -6678.9134 297.0751 297.0751 230156.04 230156.04 -151.95057 -151.95057 10000 -6531.6535 -6531.6535 -6681.1415 -6681.1415 289.19454 289.19454 229534.54 229534.54 109.72763 109.72763 Loop time of 76.9669 on 1 procs for 1000 steps with 4000 atoms Performance: 1.123 ns/day, 21.380 hours/ns, 12.993 timesteps/s 43.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 76.127 | 76.127 | 76.127 | 0.0 | 98.91 Neigh | 0.3514 | 0.3514 | 0.3514 | 0.0 | 0.46 Comm | 0.14672 | 0.14672 | 0.14672 | 0.0 | 0.19 Output | 3.1948e-05 | 3.1948e-05 | 3.1948e-05 | 0.0 | 0.00 Modify | 0.23976 | 0.23976 | 0.23976 | 0.0 | 0.31 Other | | 0.1018 | | | 0.13 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51043e+06 ave 1.51043e+06 max 1.51043e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1510434 Ave neighs/atom = 377.608 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.625007276279, Press = -1.38421245675616 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -6531.6535 -6531.6535 -6681.1415 -6681.1415 289.19454 289.19454 229534.54 229534.54 109.72763 109.72763 11000 -6522.8293 -6522.8293 -6676.2816 -6676.2816 296.86396 296.86396 230163.79 230163.79 -125.86944 -125.86944 Loop time of 84.7294 on 1 procs for 1000 steps with 4000 atoms Performance: 1.020 ns/day, 23.536 hours/ns, 11.802 timesteps/s 39.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 83.709 | 83.709 | 83.709 | 0.0 | 98.80 Neigh | 0.41729 | 0.41729 | 0.41729 | 0.0 | 0.49 Comm | 0.21844 | 0.21844 | 0.21844 | 0.0 | 0.26 Output | 2.5988e-05 | 2.5988e-05 | 2.5988e-05 | 0.0 | 0.00 Modify | 0.36221 | 0.36221 | 0.36221 | 0.0 | 0.43 Other | | 0.02224 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51135e+06 ave 1.51135e+06 max 1.51135e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1511348 Ave neighs/atom = 377.837 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.698415934041, Press = -0.468872233229581 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -6522.8293 -6522.8293 -6676.2816 -6676.2816 296.86396 296.86396 230163.79 230163.79 -125.86944 -125.86944 12000 -6527.1489 -6527.1489 -6679.7579 -6679.7579 295.23246 295.23246 229259.35 229259.35 273.0077 273.0077 Loop time of 86.4986 on 1 procs for 1000 steps with 4000 atoms Performance: 0.999 ns/day, 24.027 hours/ns, 11.561 timesteps/s 38.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 85.276 | 85.276 | 85.276 | 0.0 | 98.59 Neigh | 0.5896 | 0.5896 | 0.5896 | 0.0 | 0.68 Comm | 0.14861 | 0.14861 | 0.14861 | 0.0 | 0.17 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.42202 | 0.42202 | 0.42202 | 0.0 | 0.49 Other | | 0.06216 | | | 0.07 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.50847e+06 ave 1.50847e+06 max 1.50847e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1508468 Ave neighs/atom = 377.117 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.651167710939, Press = -2.20286185808681 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -6527.1489 -6527.1489 -6679.7579 -6679.7579 295.23246 295.23246 229259.35 229259.35 273.0077 273.0077 13000 -6527.6515 -6527.6515 -6677.5239 -6677.5239 289.93836 289.93836 230247.72 230247.72 -201.74686 -201.74686 Loop time of 85.1969 on 1 procs for 1000 steps with 4000 atoms Performance: 1.014 ns/day, 23.666 hours/ns, 11.738 timesteps/s 39.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 83.869 | 83.869 | 83.869 | 0.0 | 98.44 Neigh | 0.54377 | 0.54377 | 0.54377 | 0.0 | 0.64 Comm | 0.26828 | 0.26828 | 0.26828 | 0.0 | 0.31 Output | 3.1948e-05 | 3.1948e-05 | 3.1948e-05 | 0.0 | 0.00 Modify | 0.47424 | 0.47424 | 0.47424 | 0.0 | 0.56 Other | | 0.04198 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51311e+06 ave 1.51311e+06 max 1.51311e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1513114 Ave neighs/atom = 378.279 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.817515211691, Press = 1.05794724954391 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -6527.6515 -6527.6515 -6677.5239 -6677.5239 289.93836 289.93836 230247.72 230247.72 -201.74686 -201.74686 14000 -6533.4793 -6533.4793 -6682.3199 -6682.3199 287.94217 287.94217 229534.59 229534.59 84.293894 84.293894 Loop time of 83.0941 on 1 procs for 1000 steps with 4000 atoms Performance: 1.040 ns/day, 23.082 hours/ns, 12.035 timesteps/s 40.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 81.896 | 81.896 | 81.896 | 0.0 | 98.56 Neigh | 0.49941 | 0.49941 | 0.49941 | 0.0 | 0.60 Comm | 0.24885 | 0.24885 | 0.24885 | 0.0 | 0.30 Output | 3.2187e-05 | 3.2187e-05 | 3.2187e-05 | 0.0 | 0.00 Modify | 0.40756 | 0.40756 | 0.40756 | 0.0 | 0.49 Other | | 0.04194 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.50974e+06 ave 1.50974e+06 max 1.50974e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1509738 Ave neighs/atom = 377.435 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.69738933516, Press = -1.09995305287701 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -6533.4793 -6533.4793 -6682.3199 -6682.3199 287.94217 287.94217 229534.59 229534.59 84.293894 84.293894 15000 -6531.9033 -6531.9033 -6679.6851 -6679.6851 285.89397 285.89397 229862.72 229862.72 -56.982301 -56.982301 Loop time of 81.7514 on 1 procs for 1000 steps with 4000 atoms Performance: 1.057 ns/day, 22.709 hours/ns, 12.232 timesteps/s 40.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 80.733 | 80.733 | 80.733 | 0.0 | 98.75 Neigh | 0.48841 | 0.48841 | 0.48841 | 0.0 | 0.60 Comm | 0.14767 | 0.14767 | 0.14767 | 0.0 | 0.18 Output | 2.7895e-05 | 2.7895e-05 | 2.7895e-05 | 0.0 | 0.00 Modify | 0.35972 | 0.35972 | 0.35972 | 0.0 | 0.44 Other | | 0.02216 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51234e+06 ave 1.51234e+06 max 1.51234e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1512344 Ave neighs/atom = 378.086 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.541101798493, Press = 0.199003460073527 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -6531.9033 -6531.9033 -6679.6851 -6679.6851 285.89397 285.89397 229862.72 229862.72 -56.982301 -56.982301 16000 -6527.5794 -6527.5794 -6682.521 -6682.521 299.74502 299.74502 229632.84 229632.84 71.597508 71.597508 Loop time of 79.2546 on 1 procs for 1000 steps with 4000 atoms Performance: 1.090 ns/day, 22.015 hours/ns, 12.618 timesteps/s 42.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 78.212 | 78.212 | 78.212 | 0.0 | 98.68 Neigh | 0.50887 | 0.50887 | 0.50887 | 0.0 | 0.64 Comm | 0.16858 | 0.16858 | 0.16858 | 0.0 | 0.21 Output | 3.6001e-05 | 3.6001e-05 | 3.6001e-05 | 0.0 | 0.00 Modify | 0.34279 | 0.34279 | 0.34279 | 0.0 | 0.43 Other | | 0.02208 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.50999e+06 ave 1.50999e+06 max 1.50999e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1509994 Ave neighs/atom = 377.498 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.574012850948, Press = -1.01144636703414 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -6527.5794 -6527.5794 -6682.521 -6682.521 299.74502 299.74502 229632.84 229632.84 71.597508 71.597508 17000 -6530.5403 -6530.5403 -6681.5394 -6681.5394 292.11801 292.11801 229764.51 229764.51 -3.035571 -3.035571 Loop time of 80.8263 on 1 procs for 1000 steps with 4000 atoms Performance: 1.069 ns/day, 22.452 hours/ns, 12.372 timesteps/s 41.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 79.617 | 79.617 | 79.617 | 0.0 | 98.50 Neigh | 0.57646 | 0.57646 | 0.57646 | 0.0 | 0.71 Comm | 0.11768 | 0.11768 | 0.11768 | 0.0 | 0.15 Output | 4.9114e-05 | 4.9114e-05 | 4.9114e-05 | 0.0 | 0.00 Modify | 0.47266 | 0.47266 | 0.47266 | 0.0 | 0.58 Other | | 0.04206 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51257e+06 ave 1.51257e+06 max 1.51257e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1512568 Ave neighs/atom = 378.142 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.551200436822, Press = 0.72118357792927 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -6530.5403 -6530.5403 -6681.5394 -6681.5394 292.11801 292.11801 229764.51 229764.51 -3.035571 -3.035571 18000 -6534.1857 -6534.1857 -6683.2013 -6683.2013 288.28064 288.28064 229781.95 229781.95 -39.578761 -39.578761 Loop time of 81.7128 on 1 procs for 1000 steps with 4000 atoms Performance: 1.057 ns/day, 22.698 hours/ns, 12.238 timesteps/s 40.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 80.625 | 80.625 | 80.625 | 0.0 | 98.67 Neigh | 0.47339 | 0.47339 | 0.47339 | 0.0 | 0.58 Comm | 0.10854 | 0.10854 | 0.10854 | 0.0 | 0.13 Output | 3.4094e-05 | 3.4094e-05 | 3.4094e-05 | 0.0 | 0.00 Modify | 0.44349 | 0.44349 | 0.44349 | 0.0 | 0.54 Other | | 0.06233 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.50861e+06 ave 1.50861e+06 max 1.50861e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1508608 Ave neighs/atom = 377.152 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.450412778419, Press = -1.66545491409222 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -6534.1857 -6534.1857 -6683.2013 -6683.2013 288.28064 288.28064 229781.95 229781.95 -39.578761 -39.578761 19000 -6526.4982 -6526.4982 -6679.5039 -6679.5039 295.99986 295.99986 229752.29 229752.29 39.340992 39.340992 Loop time of 81.2368 on 1 procs for 1000 steps with 4000 atoms Performance: 1.064 ns/day, 22.566 hours/ns, 12.310 timesteps/s 41.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 80.155 | 80.155 | 80.155 | 0.0 | 98.67 Neigh | 0.46012 | 0.46012 | 0.46012 | 0.0 | 0.57 Comm | 0.19857 | 0.19857 | 0.19857 | 0.0 | 0.24 Output | 2.5988e-05 | 2.5988e-05 | 2.5988e-05 | 0.0 | 0.00 Modify | 0.36055 | 0.36055 | 0.36055 | 0.0 | 0.44 Other | | 0.06215 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51238e+06 ave 1.51238e+06 max 1.51238e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1512378 Ave neighs/atom = 378.094 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.458582664308, Press = 0.388346988088395 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -6526.4982 -6526.4982 -6679.5039 -6679.5039 295.99986 295.99986 229752.29 229752.29 39.340992 39.340992 20000 -6524.5239 -6524.5239 -6679.0453 -6679.0453 298.93205 298.93205 230052.98 230052.98 -103.8381 -103.8381 Loop time of 77.2952 on 1 procs for 1000 steps with 4000 atoms Performance: 1.118 ns/day, 21.471 hours/ns, 12.937 timesteps/s 43.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 76.207 | 76.207 | 76.207 | 0.0 | 98.59 Neigh | 0.44408 | 0.44408 | 0.44408 | 0.0 | 0.57 Comm | 0.18785 | 0.18785 | 0.18785 | 0.0 | 0.24 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.3743 | 0.3743 | 0.3743 | 0.0 | 0.48 Other | | 0.08229 | | | 0.11 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.50941e+06 ave 1.50941e+06 max 1.50941e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1509410 Ave neighs/atom = 377.353 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.506050666832, Press = -0.772193804411378 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -6524.5239 -6524.5239 -6679.0453 -6679.0453 298.93205 298.93205 230052.98 230052.98 -103.8381 -103.8381 21000 -6526.2262 -6526.2262 -6680.013 -6680.013 297.511 297.511 229632.57 229632.57 95.536854 95.536854 Loop time of 75.3846 on 1 procs for 1000 steps with 4000 atoms Performance: 1.146 ns/day, 20.940 hours/ns, 13.265 timesteps/s 43.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 74.419 | 74.419 | 74.419 | 0.0 | 98.72 Neigh | 0.39362 | 0.39362 | 0.39362 | 0.0 | 0.52 Comm | 0.16816 | 0.16816 | 0.16816 | 0.0 | 0.22 Output | 2.6941e-05 | 2.6941e-05 | 2.6941e-05 | 0.0 | 0.00 Modify | 0.32188 | 0.32188 | 0.32188 | 0.0 | 0.43 Other | | 0.08203 | | | 0.11 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51037e+06 ave 1.51037e+06 max 1.51037e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1510370 Ave neighs/atom = 377.592 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.422231224351, Press = 0.195947830964508 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -6526.2262 -6526.2262 -6680.013 -6680.013 297.511 297.511 229632.57 229632.57 95.536854 95.536854 22000 -6526.5855 -6526.5855 -6680.7656 -6680.7656 298.27176 298.27176 230082.85 230082.85 -133.63361 -133.63361 Loop time of 77.4113 on 1 procs for 1000 steps with 4000 atoms Performance: 1.116 ns/day, 21.503 hours/ns, 12.918 timesteps/s 43.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 76.251 | 76.251 | 76.251 | 0.0 | 98.50 Neigh | 0.47543 | 0.47543 | 0.47543 | 0.0 | 0.61 Comm | 0.18834 | 0.18834 | 0.18834 | 0.0 | 0.24 Output | 2.5988e-05 | 2.5988e-05 | 2.5988e-05 | 0.0 | 0.00 Modify | 0.41397 | 0.41397 | 0.41397 | 0.0 | 0.53 Other | | 0.08232 | | | 0.11 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.50903e+06 ave 1.50903e+06 max 1.50903e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1509032 Ave neighs/atom = 377.258 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.409534388673, Press = -0.555964327525492 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -6526.5855 -6526.5855 -6680.7656 -6680.7656 298.27176 298.27176 230082.85 230082.85 -133.63361 -133.63361 23000 -6528.7821 -6528.7821 -6680.8505 -6680.8505 294.18677 294.18677 229520.57 229520.57 123.97839 123.97839 Loop time of 77.0042 on 1 procs for 1000 steps with 4000 atoms Performance: 1.122 ns/day, 21.390 hours/ns, 12.986 timesteps/s 43.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 75.882 | 75.882 | 75.882 | 0.0 | 98.54 Neigh | 0.47904 | 0.47904 | 0.47904 | 0.0 | 0.62 Comm | 0.18853 | 0.18853 | 0.18853 | 0.0 | 0.24 Output | 3.3855e-05 | 3.3855e-05 | 3.3855e-05 | 0.0 | 0.00 Modify | 0.39198 | 0.39198 | 0.39198 | 0.0 | 0.51 Other | | 0.06247 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51197e+06 ave 1.51197e+06 max 1.51197e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1511968 Ave neighs/atom = 377.992 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.404918942221, Press = 0.103124134693125 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 23000 -6528.7821 -6528.7821 -6680.8505 -6680.8505 294.18677 294.18677 229520.57 229520.57 123.97839 123.97839 24000 -6534.1534 -6534.1534 -6682.7252 -6682.7252 287.42224 287.42224 230079.65 230079.65 -182.18279 -182.18279 Loop time of 78.6817 on 1 procs for 1000 steps with 4000 atoms Performance: 1.098 ns/day, 21.856 hours/ns, 12.709 timesteps/s 42.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 77.641 | 77.641 | 77.641 | 0.0 | 98.68 Neigh | 0.45777 | 0.45777 | 0.45777 | 0.0 | 0.58 Comm | 0.1684 | 0.1684 | 0.1684 | 0.0 | 0.21 Output | 3.3855e-05 | 3.3855e-05 | 3.3855e-05 | 0.0 | 0.00 Modify | 0.3526 | 0.3526 | 0.3526 | 0.0 | 0.45 Other | | 0.06192 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.50943e+06 ave 1.50943e+06 max 1.50943e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1509430 Ave neighs/atom = 377.358 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.303751835542, Press = -0.435636785184585 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 9.436 | 9.436 | 9.436 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 24000 -6534.1534 -6534.1534 -6682.7252 -6682.7252 287.42224 287.42224 230079.65 230079.65 -182.18279 -182.18279 25000 -6532.4264 -6532.4264 -6684.4701 -6684.4701 294.13888 294.13888 229401.55 229401.55 150.55136 150.55136 Loop time of 91.3585 on 1 procs for 1000 steps with 4000 atoms Performance: 0.946 ns/day, 25.377 hours/ns, 10.946 timesteps/s 36.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 90.031 | 90.031 | 90.031 | 0.0 | 98.55 Neigh | 0.5055 | 0.5055 | 0.5055 | 0.0 | 0.55 Comm | 0.25859 | 0.25859 | 0.25859 | 0.0 | 0.28 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.52142 | 0.52142 | 0.52142 | 0.0 | 0.57 Other | | 0.042 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 10895 ave 10895 max 10895 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 1.51129e+06 ave 1.51129e+06 max 1.51129e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1511286 Ave neighs/atom = 377.822 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 229759.293642471 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0