# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.525483399629593*${_u_distance} variable latticeconst_converted equal 4.525483399629593*1 lattice fcc ${latticeconst_converted} lattice fcc 4.52548339962959 Lattice spacing in x,y,z = 4.5254834 4.5254834 4.5254834 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (45.254834 45.254834 45.254834) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms create_atoms CPU = 0.001 seconds variable mass_converted equal 40.078*${_u_mass} variable mass_converted equal 40.078*1 kim_interactions Ca #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_KimJeonLee_2015_MgCa__MO_611309973581_000 pair_coeff * * Ca #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 40.078 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 92681.9000258757 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 92681.9000258757/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 92681.9000258757/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 92681.9000258757/(1*1*${_u_distance}) variable V0_metal equal 92681.9000258757/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 92681.9000258757*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 92681.9000258757 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.370 | 5.370 | 5.370 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -6058.8057 -6058.8057 -6200 -6200 273.15 273.15 92681.9 92681.9 1627.1997 1627.1997 1000 -5918.0809 -5918.0809 -6060.5914 -6060.5914 275.69621 275.69621 94999.577 94999.577 -551.12042 -551.12042 Loop time of 195.283 on 1 procs for 1000 steps with 4000 atoms Performance: 0.442 ns/day, 54.245 hours/ns, 5.121 timesteps/s 68.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 194.85 | 194.85 | 194.85 | 0.0 | 99.78 Neigh | 0.15148 | 0.15148 | 0.15148 | 0.0 | 0.08 Comm | 0.040863 | 0.040863 | 0.040863 | 0.0 | 0.02 Output | 4.5e-05 | 4.5e-05 | 4.5e-05 | 0.0 | 0.00 Modify | 0.22077 | 0.22077 | 0.22077 | 0.0 | 0.11 Other | | 0.01903 | | | 0.01 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6288.00 ave 6288 max 6288 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 539950.0 ave 539950 max 539950 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 539950 Ave neighs/atom = 134.98750 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -5918.0809 -5918.0809 -6060.5914 -6060.5914 275.69621 275.69621 94999.577 94999.577 -551.12042 -551.12042 2000 -5927.384 -5927.384 -6068.1635 -6068.1635 272.34734 272.34734 94675.515 94675.515 136.85024 136.85024 Loop time of 186.252 on 1 procs for 1000 steps with 4000 atoms Performance: 0.464 ns/day, 51.737 hours/ns, 5.369 timesteps/s 73.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 185.78 | 185.78 | 185.78 | 0.0 | 99.75 Neigh | 0.15223 | 0.15223 | 0.15223 | 0.0 | 0.08 Comm | 0.062305 | 0.062305 | 0.062305 | 0.0 | 0.03 Output | 4.21e-05 | 4.21e-05 | 4.21e-05 | 0.0 | 0.00 Modify | 0.21656 | 0.21656 | 0.21656 | 0.0 | 0.12 Other | | 0.03847 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6455.00 ave 6455 max 6455 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541078.0 ave 541078 max 541078 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541078 Ave neighs/atom = 135.26950 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -5927.384 -5927.384 -6068.1635 -6068.1635 272.34734 272.34734 94675.515 94675.515 136.85024 136.85024 3000 -5915.7347 -5915.7347 -6061.2264 -6061.2264 281.46355 281.46355 94852.435 94852.435 -91.402099 -91.402099 Loop time of 176.333 on 1 procs for 1000 steps with 4000 atoms Performance: 0.490 ns/day, 48.982 hours/ns, 5.671 timesteps/s 77.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 175.93 | 175.93 | 175.93 | 0.0 | 99.77 Neigh | 0.18653 | 0.18653 | 0.18653 | 0.0 | 0.11 Comm | 0.04256 | 0.04256 | 0.04256 | 0.0 | 0.02 Output | 5.02e-05 | 5.02e-05 | 5.02e-05 | 0.0 | 0.00 Modify | 0.15773 | 0.15773 | 0.15773 | 0.0 | 0.09 Other | | 0.01862 | | | 0.01 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6397.00 ave 6397 max 6397 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 540622.0 ave 540622 max 540622 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 540622 Ave neighs/atom = 135.15550 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -5915.7347 -5915.7347 -6061.2264 -6061.2264 281.46355 281.46355 94852.435 94852.435 -91.402099 -91.402099 4000 -5927.095 -5927.095 -6065.9746 -6065.9746 268.67214 268.67214 94761.982 94761.982 -55.822486 -55.822486 Loop time of 174.277 on 1 procs for 1000 steps with 4000 atoms Performance: 0.496 ns/day, 48.410 hours/ns, 5.738 timesteps/s 78.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 173.84 | 173.84 | 173.84 | 0.0 | 99.75 Neigh | 0.15224 | 0.15224 | 0.15224 | 0.0 | 0.09 Comm | 0.042685 | 0.042685 | 0.042685 | 0.0 | 0.02 Output | 4.11e-05 | 4.11e-05 | 4.11e-05 | 0.0 | 0.00 Modify | 0.22008 | 0.22008 | 0.22008 | 0.0 | 0.13 Other | | 0.01872 | | | 0.01 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6305.00 ave 6305 max 6305 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 540982.0 ave 540982 max 540982 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 540982 Ave neighs/atom = 135.24550 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -5927.095 -5927.095 -6065.9746 -6065.9746 268.67214 268.67214 94761.982 94761.982 -55.822486 -55.822486 5000 -5918.8016 -5918.8016 -6061.8248 -6061.8248 276.68805 276.68805 94710.332 94710.332 243.94234 243.94234 Loop time of 173.103 on 1 procs for 1000 steps with 4000 atoms Performance: 0.499 ns/day, 48.084 hours/ns, 5.777 timesteps/s 79.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 172.73 | 172.73 | 172.73 | 0.0 | 99.78 Neigh | 0.1372 | 0.1372 | 0.1372 | 0.0 | 0.08 Comm | 0.042467 | 0.042467 | 0.042467 | 0.0 | 0.02 Output | 2.78e-05 | 2.78e-05 | 2.78e-05 | 0.0 | 0.00 Modify | 0.17798 | 0.17798 | 0.17798 | 0.0 | 0.10 Other | | 0.01877 | | | 0.01 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6371.00 ave 6371 max 6371 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 540474.0 ave 540474 max 540474 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 540474 Ave neighs/atom = 135.11850 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 274.634294607956, Press = -72.1422237289648 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -5918.8016 -5918.8016 -6061.8248 -6061.8248 276.68805 276.68805 94710.332 94710.332 243.94234 243.94234 6000 -5923.6679 -5923.6679 -6063.6837 -6063.6837 270.87001 270.87001 95006.877 95006.877 -617.95959 -617.95959 Loop time of 164.679 on 1 procs for 1000 steps with 4000 atoms Performance: 0.525 ns/day, 45.744 hours/ns, 6.072 timesteps/s 82.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 164.2 | 164.2 | 164.2 | 0.0 | 99.71 Neigh | 0.16905 | 0.16905 | 0.16905 | 0.0 | 0.10 Comm | 0.10703 | 0.10703 | 0.10703 | 0.0 | 0.06 Output | 3.01e-05 | 3.01e-05 | 3.01e-05 | 0.0 | 0.00 Modify | 0.1824 | 0.1824 | 0.1824 | 0.0 | 0.11 Other | | 0.01867 | | | 0.01 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6314.00 ave 6314 max 6314 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 540580.0 ave 540580 max 540580 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 540580 Ave neighs/atom = 135.14500 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.460206853621, Press = -3.43696284823682 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -5923.6679 -5923.6679 -6063.6837 -6063.6837 270.87001 270.87001 95006.877 95006.877 -617.95959 -617.95959 7000 -5918.3628 -5918.3628 -6061.2856 -6061.2856 276.49388 276.49388 94623.252 94623.252 502.13906 502.13906 Loop time of 174.704 on 1 procs for 1000 steps with 4000 atoms Performance: 0.495 ns/day, 48.529 hours/ns, 5.724 timesteps/s 78.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 174.23 | 174.23 | 174.23 | 0.0 | 99.73 Neigh | 0.16685 | 0.16685 | 0.16685 | 0.0 | 0.10 Comm | 0.083531 | 0.083531 | 0.083531 | 0.0 | 0.05 Output | 3.57e-05 | 3.57e-05 | 3.57e-05 | 0.0 | 0.00 Modify | 0.2016 | 0.2016 | 0.2016 | 0.0 | 0.12 Other | | 0.01869 | | | 0.01 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6389.00 ave 6389 max 6389 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 540840.0 ave 540840 max 540840 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 540840 Ave neighs/atom = 135.21000 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.144764976829, Press = 13.1967181688072 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -5918.3628 -5918.3628 -6061.2856 -6061.2856 276.49388 276.49388 94623.252 94623.252 502.13906 502.13906 8000 -5923.5212 -5923.5212 -6064.267 -6064.267 272.28225 272.28225 94813.115 94813.115 -118.92801 -118.92801 Loop time of 177.504 on 1 procs for 1000 steps with 4000 atoms Performance: 0.487 ns/day, 49.307 hours/ns, 5.634 timesteps/s 76.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 177.01 | 177.01 | 177.01 | 0.0 | 99.72 Neigh | 0.18851 | 0.18851 | 0.18851 | 0.0 | 0.11 Comm | 0.083432 | 0.083432 | 0.083432 | 0.0 | 0.05 Output | 2.87e-05 | 2.87e-05 | 2.87e-05 | 0.0 | 0.00 Modify | 0.20387 | 0.20387 | 0.20387 | 0.0 | 0.11 Other | | 0.01859 | | | 0.01 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6329.00 ave 6329 max 6329 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 540812.0 ave 540812 max 540812 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 540812 Ave neighs/atom = 135.20300 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.110505474117, Press = -5.71900761104479 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -5923.5212 -5923.5212 -6064.267 -6064.267 272.28225 272.28225 94813.115 94813.115 -118.92801 -118.92801 9000 -5918.9254 -5918.9254 -6061.7651 -6061.7651 276.3331 276.3331 94857.943 94857.943 -134.14404 -134.14404 Loop time of 171.865 on 1 procs for 1000 steps with 4000 atoms Performance: 0.503 ns/day, 47.740 hours/ns, 5.819 timesteps/s 79.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 171.44 | 171.44 | 171.44 | 0.0 | 99.75 Neigh | 0.15005 | 0.15005 | 0.15005 | 0.0 | 0.09 Comm | 0.042622 | 0.042622 | 0.042622 | 0.0 | 0.02 Output | 3.58e-05 | 3.58e-05 | 3.58e-05 | 0.0 | 0.00 Modify | 0.21294 | 0.21294 | 0.21294 | 0.0 | 0.12 Other | | 0.01871 | | | 0.01 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6364.00 ave 6364 max 6364 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 540818.0 ave 540818 max 540818 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 540818 Ave neighs/atom = 135.20450 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.494566424156, Press = 4.206127871897 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -5918.9254 -5918.9254 -6061.7651 -6061.7651 276.3331 276.3331 94857.943 94857.943 -134.14404 -134.14404 10000 -5923.7413 -5923.7413 -6064.4428 -6064.4428 272.19652 272.19652 94680.784 94680.784 301.20865 301.20865 Loop time of 184.116 on 1 procs for 1000 steps with 4000 atoms Performance: 0.469 ns/day, 51.143 hours/ns, 5.431 timesteps/s 74.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 183.73 | 183.73 | 183.73 | 0.0 | 99.79 Neigh | 0.13694 | 0.13694 | 0.13694 | 0.0 | 0.07 Comm | 0.042626 | 0.042626 | 0.042626 | 0.0 | 0.02 Output | 3.66e-05 | 3.66e-05 | 3.66e-05 | 0.0 | 0.00 Modify | 0.18346 | 0.18346 | 0.18346 | 0.0 | 0.10 Other | | 0.0188 | | | 0.01 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6384.00 ave 6384 max 6384 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 540520.0 ave 540520 max 540520 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 540520 Ave neighs/atom = 135.13000 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 94790.1091891097 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0