# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.525483399629593*${_u_distance} variable latticeconst_converted equal 4.525483399629593*1 lattice fcc ${latticeconst_converted} lattice fcc 4.52548339962959 Lattice spacing in x,y,z = 4.5254834 4.5254834 4.5254834 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (45.254834 45.254834 45.254834) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0 0 0) to (45.254834 45.254834 45.254834) create_atoms CPU = 0.001 seconds variable mass_converted equal 40.078*${_u_mass} variable mass_converted equal 40.078*1 kim_interactions Ca WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Ca #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_KimJeonLee_2015_MgCa__MO_611309973581_002 pair_coeff * * Ca #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 40.078 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 92681.9000258757 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 92681.9000258757/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 92681.9000258757/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 92681.9000258757/(1*1*${_u_distance}) variable V0_metal equal 92681.9000258757/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 92681.9000258757*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 92681.9000258757 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 253.15*${_u_temperature} variable temp_converted equal 253.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 253.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "253.15 - 0.2" variable T_up equal "253.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_611309973581_002#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.37 | 5.37 | 5.37 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -6069.1439 -6069.1439 -6200 -6200 253.15 253.15 92681.9 92681.9 1508.0562 1508.0562 1000 -5938.5059 -5938.5059 -6071.0489 -6071.0489 256.41346 256.41346 94699.694 94699.694 -137.07025 -137.07025 Loop time of 111.343 on 1 procs for 1000 steps with 4000 atoms Performance: 0.776 ns/day, 30.929 hours/ns, 8.981 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 111.13 | 111.13 | 111.13 | 0.0 | 99.81 Neigh | 0.052972 | 0.052972 | 0.052972 | 0.0 | 0.05 Comm | 0.023454 | 0.023454 | 0.023454 | 0.0 | 0.02 Output | 0.00016371 | 0.00016371 | 0.00016371 | 0.0 | 0.00 Modify | 0.12009 | 0.12009 | 0.12009 | 0.0 | 0.11 Other | | 0.01186 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6319 ave 6319 max 6319 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541180 ave 541180 max 541180 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541180 Ave neighs/atom = 135.295 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.375 | 5.375 | 5.375 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -5938.5059 -5938.5059 -6071.0489 -6071.0489 256.41346 256.41346 94699.694 94699.694 -137.07025 -137.07025 2000 -5947.3929 -5947.3929 -6077.0982 -6077.0982 250.92367 250.92367 94621.462 94621.462 -122.33615 -122.33615 Loop time of 127.142 on 1 procs for 1000 steps with 4000 atoms Performance: 0.680 ns/day, 35.317 hours/ns, 7.865 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.86 | 126.86 | 126.86 | 0.0 | 99.78 Neigh | 0.12303 | 0.12303 | 0.12303 | 0.0 | 0.10 Comm | 0.024756 | 0.024756 | 0.024756 | 0.0 | 0.02 Output | 7.3017e-05 | 7.3017e-05 | 7.3017e-05 | 0.0 | 0.00 Modify | 0.11869 | 0.11869 | 0.11869 | 0.0 | 0.09 Other | | 0.0113 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6440 ave 6440 max 6440 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541366 ave 541366 max 541366 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541366 Ave neighs/atom = 135.3415 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -5947.3929 -5947.3929 -6077.0982 -6077.0982 250.92367 250.92367 94621.462 94621.462 -122.33615 -122.33615 3000 -5936.3369 -5936.3369 -6071.1938 -6071.1938 260.88996 260.88996 94672.822 94672.822 -16.231131 -16.231131 Loop time of 127.751 on 1 procs for 1000 steps with 4000 atoms Performance: 0.676 ns/day, 35.486 hours/ns, 7.828 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.51 | 127.51 | 127.51 | 0.0 | 99.81 Neigh | 0.088545 | 0.088545 | 0.088545 | 0.0 | 0.07 Comm | 0.024552 | 0.024552 | 0.024552 | 0.0 | 0.02 Output | 7.6173e-05 | 7.6173e-05 | 7.6173e-05 | 0.0 | 0.00 Modify | 0.11832 | 0.11832 | 0.11832 | 0.0 | 0.09 Other | | 0.01129 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6423 ave 6423 max 6423 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541294 ave 541294 max 541294 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541294 Ave neighs/atom = 135.3235 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -5936.3369 -5936.3369 -6071.1938 -6071.1938 260.88996 260.88996 94672.822 94672.822 -16.231131 -16.231131 4000 -5947.2164 -5947.2164 -6075.4035 -6075.4035 247.98657 247.98657 94572.655 94572.655 59.811412 59.811412 Loop time of 127.326 on 1 procs for 1000 steps with 4000 atoms Performance: 0.679 ns/day, 35.368 hours/ns, 7.854 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.07 | 127.07 | 127.07 | 0.0 | 99.80 Neigh | 0.10581 | 0.10581 | 0.10581 | 0.0 | 0.08 Comm | 0.024732 | 0.024732 | 0.024732 | 0.0 | 0.02 Output | 7.2416e-05 | 7.2416e-05 | 7.2416e-05 | 0.0 | 0.00 Modify | 0.11846 | 0.11846 | 0.11846 | 0.0 | 0.09 Other | | 0.01123 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6304 ave 6304 max 6304 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541434 ave 541434 max 541434 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541434 Ave neighs/atom = 135.3585 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.375 | 5.375 | 5.375 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -5947.2164 -5947.2164 -6075.4035 -6075.4035 247.98657 247.98657 94572.655 94572.655 59.811412 59.811412 5000 -5939.4581 -5939.4581 -6072.3304 -6072.3304 257.05056 257.05056 94596.571 94596.571 113.88534 113.88534 Loop time of 127.975 on 1 procs for 1000 steps with 4000 atoms Performance: 0.675 ns/day, 35.549 hours/ns, 7.814 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.73 | 127.73 | 127.73 | 0.0 | 99.81 Neigh | 0.088306 | 0.088306 | 0.088306 | 0.0 | 0.07 Comm | 0.024614 | 0.024614 | 0.024614 | 0.0 | 0.02 Output | 5.0615e-05 | 5.0615e-05 | 5.0615e-05 | 0.0 | 0.00 Modify | 0.11912 | 0.11912 | 0.11912 | 0.0 | 0.09 Other | | 0.01147 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6299 ave 6299 max 6299 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541294 ave 541294 max 541294 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541294 Ave neighs/atom = 135.3235 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 254.212888817159, Press = -38.4106165136037 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.375 | 5.375 | 5.375 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -5939.4581 -5939.4581 -6072.3304 -6072.3304 257.05056 257.05056 94596.571 94596.571 113.88534 113.88534 6000 -5943.3341 -5943.3341 -6074.0395 -6074.0395 252.85834 252.85834 94726.959 94726.959 -258.94244 -258.94244 Loop time of 127.121 on 1 procs for 1000 steps with 4000 atoms Performance: 0.680 ns/day, 35.311 hours/ns, 7.867 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.84 | 126.84 | 126.84 | 0.0 | 99.78 Neigh | 0.12349 | 0.12349 | 0.12349 | 0.0 | 0.10 Comm | 0.024756 | 0.024756 | 0.024756 | 0.0 | 0.02 Output | 5.2177e-05 | 5.2177e-05 | 5.2177e-05 | 0.0 | 0.00 Modify | 0.12338 | 0.12338 | 0.12338 | 0.0 | 0.10 Other | | 0.01131 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6306 ave 6306 max 6306 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 540966 ave 540966 max 540966 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 540966 Ave neighs/atom = 135.2415 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.410350073713, Press = -17.687139429578 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -5943.3341 -5943.3341 -6074.0395 -6074.0395 252.85834 252.85834 94726.959 94726.959 -258.94244 -258.94244 7000 -5939.6416 -5939.6416 -6070.9666 -6070.9666 254.05722 254.05722 94866.613 94866.613 -623.63385 -623.63385 Loop time of 127.612 on 1 procs for 1000 steps with 4000 atoms Performance: 0.677 ns/day, 35.448 hours/ns, 7.836 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.31 | 127.31 | 127.31 | 0.0 | 99.76 Neigh | 0.14119 | 0.14119 | 0.14119 | 0.0 | 0.11 Comm | 0.024921 | 0.024921 | 0.024921 | 0.0 | 0.02 Output | 5.1306e-05 | 5.1306e-05 | 5.1306e-05 | 0.0 | 0.00 Modify | 0.12361 | 0.12361 | 0.12361 | 0.0 | 0.10 Other | | 0.01118 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6415 ave 6415 max 6415 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541166 ave 541166 max 541166 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541166 Ave neighs/atom = 135.2915 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.107160519431, Press = 11.5885204866095 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -5939.6416 -5939.6416 -6070.9666 -6070.9666 254.05722 254.05722 94866.613 94866.613 -623.63385 -623.63385 8000 -5944.0406 -5944.0406 -6073.5706 -6073.5706 250.58465 250.58465 94512.003 94512.003 338.74966 338.74966 Loop time of 127.399 on 1 procs for 1000 steps with 4000 atoms Performance: 0.678 ns/day, 35.389 hours/ns, 7.849 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.12 | 127.12 | 127.12 | 0.0 | 99.78 Neigh | 0.12352 | 0.12352 | 0.12352 | 0.0 | 0.10 Comm | 0.025085 | 0.025085 | 0.025085 | 0.0 | 0.02 Output | 5.1707e-05 | 5.1707e-05 | 5.1707e-05 | 0.0 | 0.00 Modify | 0.12405 | 0.12405 | 0.12405 | 0.0 | 0.10 Other | | 0.01132 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6360 ave 6360 max 6360 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541360 ave 541360 max 541360 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541360 Ave neighs/atom = 135.34 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.197159086118, Press = 4.10218087142368 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.375 | 5.375 | 5.375 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -5944.0406 -5944.0406 -6073.5706 -6073.5706 250.58465 250.58465 94512.003 94512.003 338.74966 338.74966 9000 -5940.3919 -5940.3919 -6070.2312 -6070.2312 251.18291 251.18291 94608.966 94608.966 172.88033 172.88033 Loop time of 127.804 on 1 procs for 1000 steps with 4000 atoms Performance: 0.676 ns/day, 35.501 hours/ns, 7.824 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.52 | 127.52 | 127.52 | 0.0 | 99.78 Neigh | 0.12371 | 0.12371 | 0.12371 | 0.0 | 0.10 Comm | 0.024851 | 0.024851 | 0.024851 | 0.0 | 0.02 Output | 5.35e-05 | 5.35e-05 | 5.35e-05 | 0.0 | 0.00 Modify | 0.12392 | 0.12392 | 0.12392 | 0.0 | 0.10 Other | | 0.01152 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6438 ave 6438 max 6438 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541014 ave 541014 max 541014 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541014 Ave neighs/atom = 135.2535 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.469894243092, Press = -2.25224159452344 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -5940.3919 -5940.3919 -6070.2312 -6070.2312 251.18291 251.18291 94608.966 94608.966 172.88033 172.88033 10000 -5944.8544 -5944.8544 -6073.1706 -6073.1706 248.23624 248.23624 94672.862 94672.862 -113.65642 -113.65642 Loop time of 127.609 on 1 procs for 1000 steps with 4000 atoms Performance: 0.677 ns/day, 35.447 hours/ns, 7.836 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.34 | 127.34 | 127.34 | 0.0 | 99.79 Neigh | 0.10625 | 0.10625 | 0.10625 | 0.0 | 0.08 Comm | 0.02471 | 0.02471 | 0.02471 | 0.0 | 0.02 Output | 5.1076e-05 | 5.1076e-05 | 5.1076e-05 | 0.0 | 0.00 Modify | 0.12374 | 0.12374 | 0.12374 | 0.0 | 0.10 Other | | 0.01127 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6350 ave 6350 max 6350 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541514 ave 541514 max 541514 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541514 Ave neighs/atom = 135.3785 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.312066981322, Press = -1.31560028549526 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.375 | 5.375 | 5.375 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -5944.8544 -5944.8544 -6073.1706 -6073.1706 248.23624 248.23624 94672.862 94672.862 -113.65642 -113.65642 11000 -5938.8846 -5938.8846 -6069.3611 -6069.3611 252.41564 252.41564 94720.115 94720.115 -97.517702 -97.517702 Loop time of 127.746 on 1 procs for 1000 steps with 4000 atoms Performance: 0.676 ns/day, 35.485 hours/ns, 7.828 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.48 | 127.48 | 127.48 | 0.0 | 99.79 Neigh | 0.10611 | 0.10611 | 0.10611 | 0.0 | 0.08 Comm | 0.024792 | 0.024792 | 0.024792 | 0.0 | 0.02 Output | 5.3721e-05 | 5.3721e-05 | 5.3721e-05 | 0.0 | 0.00 Modify | 0.12371 | 0.12371 | 0.12371 | 0.0 | 0.10 Other | | 0.01133 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6300 ave 6300 max 6300 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541430 ave 541430 max 541430 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541430 Ave neighs/atom = 135.3575 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.355712948129, Press = 1.03415181062439 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.375 | 5.375 | 5.375 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -5938.8846 -5938.8846 -6069.3611 -6069.3611 252.41564 252.41564 94720.115 94720.115 -97.517702 -97.517702 12000 -5942.706 -5942.706 -6073.8922 -6073.8922 253.78859 253.78859 94536.282 94536.282 277.96089 277.96089 Loop time of 127.878 on 1 procs for 1000 steps with 4000 atoms Performance: 0.676 ns/day, 35.522 hours/ns, 7.820 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.59 | 127.59 | 127.59 | 0.0 | 99.78 Neigh | 0.12377 | 0.12377 | 0.12377 | 0.0 | 0.10 Comm | 0.024955 | 0.024955 | 0.024955 | 0.0 | 0.02 Output | 5.2819e-05 | 5.2819e-05 | 5.2819e-05 | 0.0 | 0.00 Modify | 0.12392 | 0.12392 | 0.12392 | 0.0 | 0.10 Other | | 0.0112 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6341 ave 6341 max 6341 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541534 ave 541534 max 541534 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541534 Ave neighs/atom = 135.3835 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.528255604342, Press = 1.14155407656189 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -5942.706 -5942.706 -6073.8922 -6073.8922 253.78859 253.78859 94536.282 94536.282 277.96089 277.96089 13000 -5943.0814 -5943.0814 -6075.0785 -6075.0785 255.35726 255.35726 94517.436 94517.436 280.15574 280.15574 Loop time of 127.508 on 1 procs for 1000 steps with 4000 atoms Performance: 0.678 ns/day, 35.419 hours/ns, 7.843 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.21 | 127.21 | 127.21 | 0.0 | 99.76 Neigh | 0.14154 | 0.14154 | 0.14154 | 0.0 | 0.11 Comm | 0.024939 | 0.024939 | 0.024939 | 0.0 | 0.02 Output | 6.1225e-05 | 6.1225e-05 | 6.1225e-05 | 0.0 | 0.00 Modify | 0.12405 | 0.12405 | 0.12405 | 0.0 | 0.10 Other | | 0.0112 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6409 ave 6409 max 6409 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541352 ave 541352 max 541352 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541352 Ave neighs/atom = 135.338 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.514925581226, Press = -2.67404058897727 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -5943.0814 -5943.0814 -6075.0785 -6075.0785 255.35726 255.35726 94517.436 94517.436 280.15574 280.15574 14000 -5940.2293 -5940.2293 -6071.8265 -6071.8265 254.58367 254.58367 94800.478 94800.478 -420.22118 -420.22118 Loop time of 127.772 on 1 procs for 1000 steps with 4000 atoms Performance: 0.676 ns/day, 35.492 hours/ns, 7.826 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.49 | 127.49 | 127.49 | 0.0 | 99.78 Neigh | 0.1239 | 0.1239 | 0.1239 | 0.0 | 0.10 Comm | 0.0248 | 0.0248 | 0.0248 | 0.0 | 0.02 Output | 0.00012979 | 0.00012979 | 0.00012979 | 0.0 | 0.00 Modify | 0.12408 | 0.12408 | 0.12408 | 0.0 | 0.10 Other | | 0.01122 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6289 ave 6289 max 6289 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541356 ave 541356 max 541356 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541356 Ave neighs/atom = 135.339 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.302263990316, Press = -0.927997980966185 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -5940.2293 -5940.2293 -6071.8265 -6071.8265 254.58367 254.58367 94800.478 94800.478 -420.22118 -420.22118 15000 -5943.9288 -5943.9288 -6074.1523 -6074.1523 251.92624 251.92624 94665.692 94665.692 -144.5431 -144.5431 Loop time of 127.709 on 1 procs for 1000 steps with 4000 atoms Performance: 0.677 ns/day, 35.475 hours/ns, 7.830 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.42 | 127.42 | 127.42 | 0.0 | 99.78 Neigh | 0.12389 | 0.12389 | 0.12389 | 0.0 | 0.10 Comm | 0.025034 | 0.025034 | 0.025034 | 0.0 | 0.02 Output | 5.2669e-05 | 5.2669e-05 | 5.2669e-05 | 0.0 | 0.00 Modify | 0.12402 | 0.12402 | 0.12402 | 0.0 | 0.10 Other | | 0.0113 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6314 ave 6314 max 6314 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541432 ave 541432 max 541432 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541432 Ave neighs/atom = 135.358 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.253706182311, Press = 1.6017720389331 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.375 | 5.375 | 5.375 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -5943.9288 -5943.9288 -6074.1523 -6074.1523 251.92624 251.92624 94665.692 94665.692 -144.5431 -144.5431 16000 -5941.7448 -5941.7448 -6071.4889 -6071.4889 250.99876 250.99876 94603.384 94603.384 110.94795 110.94795 Loop time of 127.679 on 1 procs for 1000 steps with 4000 atoms Performance: 0.677 ns/day, 35.466 hours/ns, 7.832 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.41 | 127.41 | 127.41 | 0.0 | 99.79 Neigh | 0.1063 | 0.1063 | 0.1063 | 0.0 | 0.08 Comm | 0.024722 | 0.024722 | 0.024722 | 0.0 | 0.02 Output | 5.1086e-05 | 5.1086e-05 | 5.1086e-05 | 0.0 | 0.00 Modify | 0.12376 | 0.12376 | 0.12376 | 0.0 | 0.10 Other | | 0.0113 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6415 ave 6415 max 6415 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541524 ave 541524 max 541524 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541524 Ave neighs/atom = 135.381 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.227027378664, Press = 0.480868590311351 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.376 | 5.376 | 5.376 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -5941.7448 -5941.7448 -6071.4889 -6071.4889 250.99876 250.99876 94603.384 94603.384 110.94795 110.94795 17000 -5944.6928 -5944.6928 -6076.1065 -6076.1065 254.22876 254.22876 94629.681 94629.681 -59.631753 -59.631753 Loop time of 127.573 on 1 procs for 1000 steps with 4000 atoms Performance: 0.677 ns/day, 35.437 hours/ns, 7.839 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.31 | 127.31 | 127.31 | 0.0 | 99.79 Neigh | 0.10645 | 0.10645 | 0.10645 | 0.0 | 0.08 Comm | 0.024785 | 0.024785 | 0.024785 | 0.0 | 0.02 Output | 5.5033e-05 | 5.5033e-05 | 5.5033e-05 | 0.0 | 0.00 Modify | 0.12332 | 0.12332 | 0.12332 | 0.0 | 0.10 Other | | 0.01133 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6353 ave 6353 max 6353 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 541414 ave 541414 max 541414 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 541414 Ave neighs/atom = 135.3535 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T253.15.out" else "print 'not_converged' file output/vol_T253.15.out" print '${V}' file output/vol_T253.15.out 94638.3038684305 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0