# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.580486714839936*${_u_distance} variable latticeconst_converted equal 5.580486714839936*1 lattice fcc ${latticeconst_converted} lattice fcc 5.58048671483994 Lattice spacing in x,y,z = 5.5804867 5.5804867 5.5804867 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (55.804867 55.804867 55.804867) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms create_atoms CPU = 0.001 seconds variable mass_converted equal 40.078*${_u_mass} variable mass_converted equal 40.078*1 kim_interactions Ca #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_JangSeolLee_2019_CaZnMg__MO_708495328010_000 pair_coeff * * Ca #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 40.078 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 173786.579609503 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 173786.579609503/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 173786.579609503/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 173786.579609503/(1*1*${_u_distance}) variable V0_metal equal 173786.579609503/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 173786.579609503*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 173786.579609503 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 253.15*${_u_temperature} variable temp_converted equal 253.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 253.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "253.15 - 0.2" variable T_up equal "253.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.143 | 4.143 | 4.143 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -7229.1439 -7229.1439 -7360 -7360 253.15 253.15 173786.58 173786.58 804.25939 804.25939 1000 -7105.5705 -7105.5705 -7240.3862 -7240.3862 260.80997 260.80997 177146.09 177146.09 183.54212 183.54212 Loop time of 68.2993 on 1 procs for 1000 steps with 4000 atoms Performance: 1.265 ns/day, 18.972 hours/ns, 14.641 timesteps/s 62.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 67.89 | 67.89 | 67.89 | 0.0 | 99.40 Neigh | 0.10503 | 0.10503 | 0.10503 | 0.0 | 0.15 Comm | 0.050602 | 0.050602 | 0.050602 | 0.0 | 0.07 Output | 5.14e-05 | 5.14e-05 | 5.14e-05 | 0.0 | 0.00 Modify | 0.23728 | 0.23728 | 0.23728 | 0.0 | 0.35 Other | | 0.01679 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3815.00 ave 3815 max 3815 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 196226.0 ave 196226 max 196226 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 196226 Ave neighs/atom = 49.056500 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -7105.5705 -7105.5705 -7240.3862 -7240.3862 260.80997 260.80997 177146.09 177146.09 183.54212 183.54212 2000 -7108.4315 -7108.4315 -7239.842 -7239.842 254.22266 254.22266 177308.85 177308.85 20.898619 20.898619 Loop time of 74.3487 on 1 procs for 1000 steps with 4000 atoms Performance: 1.162 ns/day, 20.652 hours/ns, 13.450 timesteps/s 57.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 73.903 | 73.903 | 73.903 | 0.0 | 99.40 Neigh | 0.073609 | 0.073609 | 0.073609 | 0.0 | 0.10 Comm | 0.027169 | 0.027169 | 0.027169 | 0.0 | 0.04 Output | 4.27e-05 | 4.27e-05 | 4.27e-05 | 0.0 | 0.00 Modify | 0.31733 | 0.31733 | 0.31733 | 0.0 | 0.43 Other | | 0.02728 | | | 0.04 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3816.00 ave 3816 max 3816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197262.0 ave 197262 max 197262 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197262 Ave neighs/atom = 49.315500 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -7108.4315 -7108.4315 -7239.842 -7239.842 254.22266 254.22266 177308.85 177308.85 20.898619 20.898619 3000 -7115.1386 -7115.1386 -7241.3888 -7241.3888 244.23961 244.23961 177254.81 177254.81 -2.0709125 -2.0709125 Loop time of 64.9416 on 1 procs for 1000 steps with 4000 atoms Performance: 1.330 ns/day, 18.039 hours/ns, 15.398 timesteps/s 66.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 64.644 | 64.644 | 64.644 | 0.0 | 99.54 Neigh | 0.057621 | 0.057621 | 0.057621 | 0.0 | 0.09 Comm | 0.027166 | 0.027166 | 0.027166 | 0.0 | 0.04 Output | 4.82e-05 | 4.82e-05 | 4.82e-05 | 0.0 | 0.00 Modify | 0.19604 | 0.19604 | 0.19604 | 0.0 | 0.30 Other | | 0.01675 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3814.00 ave 3814 max 3814 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197600.0 ave 197600 max 197600 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197600 Ave neighs/atom = 49.400000 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -7115.1386 -7115.1386 -7241.3888 -7241.3888 244.23961 244.23961 177254.81 177254.81 -2.0709125 -2.0709125 4000 -7104.0826 -7104.0826 -7236.6358 -7236.6358 256.43322 256.43322 177509.52 177509.52 -131.71209 -131.71209 Loop time of 61.8581 on 1 procs for 1000 steps with 4000 atoms Performance: 1.397 ns/day, 17.183 hours/ns, 16.166 timesteps/s 69.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 61.468 | 61.468 | 61.468 | 0.0 | 99.37 Neigh | 0.069769 | 0.069769 | 0.069769 | 0.0 | 0.11 Comm | 0.047189 | 0.047189 | 0.047189 | 0.0 | 0.08 Output | 4.1e-05 | 4.1e-05 | 4.1e-05 | 0.0 | 0.00 Modify | 0.25609 | 0.25609 | 0.25609 | 0.0 | 0.41 Other | | 0.01689 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3816.00 ave 3816 max 3816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197218.0 ave 197218 max 197218 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197218 Ave neighs/atom = 49.304500 Neighbor list builds = 6 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -7104.0826 -7104.0826 -7236.6358 -7236.6358 256.43322 256.43322 177509.52 177509.52 -131.71209 -131.71209 5000 -7111.0436 -7111.0436 -7237.6173 -7237.6173 244.8655 244.8655 177412.17 177412.17 -75.474025 -75.474025 Loop time of 64.2629 on 1 procs for 1000 steps with 4000 atoms Performance: 1.344 ns/day, 17.851 hours/ns, 15.561 timesteps/s 67.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 63.972 | 63.972 | 63.972 | 0.0 | 99.55 Neigh | 0.049369 | 0.049369 | 0.049369 | 0.0 | 0.08 Comm | 0.047295 | 0.047295 | 0.047295 | 0.0 | 0.07 Output | 2.95e-05 | 2.95e-05 | 2.95e-05 | 0.0 | 0.00 Modify | 0.17739 | 0.17739 | 0.17739 | 0.0 | 0.28 Other | | 0.01712 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3815.00 ave 3815 max 3815 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197096.0 ave 197096 max 197096 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197096 Ave neighs/atom = 49.274000 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 251.852460576881, Press = 55.7761276385425 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -7111.0436 -7111.0436 -7237.6173 -7237.6173 244.8655 244.8655 177412.17 177412.17 -75.474025 -75.474025 6000 -7107.0475 -7107.0475 -7239.6248 -7239.6248 256.47987 256.47987 177673.36 177673.36 -346.8185 -346.8185 Loop time of 61.1959 on 1 procs for 1000 steps with 4000 atoms Performance: 1.412 ns/day, 16.999 hours/ns, 16.341 timesteps/s 69.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 60.763 | 60.763 | 60.763 | 0.0 | 99.29 Neigh | 0.087265 | 0.087265 | 0.087265 | 0.0 | 0.14 Comm | 0.027261 | 0.027261 | 0.027261 | 0.0 | 0.04 Output | 2.94e-05 | 2.94e-05 | 2.94e-05 | 0.0 | 0.00 Modify | 0.30115 | 0.30115 | 0.30115 | 0.0 | 0.49 Other | | 0.01693 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3816.00 ave 3816 max 3816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197410.0 ave 197410 max 197410 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197410 Ave neighs/atom = 49.352500 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.497964833949, Press = -1.65349940493844 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -7107.0475 -7107.0475 -7239.6248 -7239.6248 256.47987 256.47987 177673.36 177673.36 -346.8185 -346.8185 7000 -7109.9249 -7109.9249 -7239.6383 -7239.6383 250.93943 250.93943 177612.5 177612.5 -290.06784 -290.06784 Loop time of 64.443 on 1 procs for 1000 steps with 4000 atoms Performance: 1.341 ns/day, 17.901 hours/ns, 15.518 timesteps/s 66.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 64.032 | 64.032 | 64.032 | 0.0 | 99.36 Neigh | 0.06745 | 0.06745 | 0.06745 | 0.0 | 0.10 Comm | 0.043579 | 0.043579 | 0.043579 | 0.0 | 0.07 Output | 3.53e-05 | 3.53e-05 | 3.53e-05 | 0.0 | 0.00 Modify | 0.28252 | 0.28252 | 0.28252 | 0.0 | 0.44 Other | | 0.01701 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3816.00 ave 3816 max 3816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197046.0 ave 197046 max 197046 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197046 Ave neighs/atom = 49.261500 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.080458437033, Press = -2.8970038591847 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -7109.9249 -7109.9249 -7239.6383 -7239.6383 250.93943 250.93943 177612.5 177612.5 -290.06784 -290.06784 8000 -7109.7217 -7109.7217 -7236.6272 -7236.6272 245.50742 245.50742 177380.81 177380.81 -44.07711 -44.07711 Loop time of 61.0277 on 1 procs for 1000 steps with 4000 atoms Performance: 1.416 ns/day, 16.952 hours/ns, 16.386 timesteps/s 71.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 60.641 | 60.641 | 60.641 | 0.0 | 99.37 Neigh | 0.12697 | 0.12697 | 0.12697 | 0.0 | 0.21 Comm | 0.02769 | 0.02769 | 0.02769 | 0.0 | 0.05 Output | 3.63e-05 | 3.63e-05 | 3.63e-05 | 0.0 | 0.00 Modify | 0.21517 | 0.21517 | 0.21517 | 0.0 | 0.35 Other | | 0.01703 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3814.00 ave 3814 max 3814 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197192.0 ave 197192 max 197192 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197192 Ave neighs/atom = 49.298000 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.237185221528, Press = -3.07040738884508 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -7109.7217 -7109.7217 -7236.6272 -7236.6272 245.50742 245.50742 177380.81 177380.81 -44.07711 -44.07711 9000 -7109.7622 -7109.7622 -7236.3726 -7236.3726 244.93638 244.93638 177236.69 177236.69 97.353162 97.353162 Loop time of 62.7032 on 1 procs for 1000 steps with 4000 atoms Performance: 1.378 ns/day, 17.418 hours/ns, 15.948 timesteps/s 68.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 62.398 | 62.398 | 62.398 | 0.0 | 99.51 Neigh | 0.036205 | 0.036205 | 0.036205 | 0.0 | 0.06 Comm | 0.047216 | 0.047216 | 0.047216 | 0.0 | 0.08 Output | 3.67e-05 | 3.67e-05 | 3.67e-05 | 0.0 | 0.00 Modify | 0.2043 | 0.2043 | 0.2043 | 0.0 | 0.33 Other | | 0.01714 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3813.00 ave 3813 max 3813 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197144.0 ave 197144 max 197144 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197144 Ave neighs/atom = 49.286000 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.417810389709, Press = -1.01812469979629 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -7109.7622 -7109.7622 -7236.3726 -7236.3726 244.93638 244.93638 177236.69 177236.69 97.353162 97.353162 10000 -7110.561 -7110.561 -7240.4617 -7240.4617 251.30161 251.30161 177191.86 177191.86 96.59655 96.59655 Loop time of 62.7818 on 1 procs for 1000 steps with 4000 atoms Performance: 1.376 ns/day, 17.439 hours/ns, 15.928 timesteps/s 68.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 62.301 | 62.301 | 62.301 | 0.0 | 99.23 Neigh | 0.075175 | 0.075175 | 0.075175 | 0.0 | 0.12 Comm | 0.087557 | 0.087557 | 0.087557 | 0.0 | 0.14 Output | 3.67e-05 | 3.67e-05 | 3.67e-05 | 0.0 | 0.00 Modify | 0.28172 | 0.28172 | 0.28172 | 0.0 | 0.45 Other | | 0.03673 | | | 0.06 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3813.00 ave 3813 max 3813 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197136.0 ave 197136 max 197136 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197136 Ave neighs/atom = 49.284000 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.35837775442, Press = -0.359716461092611 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -7110.561 -7110.561 -7240.4617 -7240.4617 251.30161 251.30161 177191.86 177191.86 96.59655 96.59655 11000 -7102.9847 -7102.9847 -7237.2222 -7237.2222 259.6916 259.6916 177221.82 177221.82 158.17876 158.17876 Loop time of 57.0536 on 1 procs for 1000 steps with 4000 atoms Performance: 1.514 ns/day, 15.848 hours/ns, 17.527 timesteps/s 75.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 56.771 | 56.771 | 56.771 | 0.0 | 99.50 Neigh | 0.055947 | 0.055947 | 0.055947 | 0.0 | 0.10 Comm | 0.027524 | 0.027524 | 0.027524 | 0.0 | 0.05 Output | 3.65e-05 | 3.65e-05 | 3.65e-05 | 0.0 | 0.00 Modify | 0.17262 | 0.17262 | 0.17262 | 0.0 | 0.30 Other | | 0.02635 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3816.00 ave 3816 max 3816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 196982.0 ave 196982 max 196982 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 196982 Ave neighs/atom = 49.245500 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.535994095812, Press = 0.136562261901777 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -7102.9847 -7102.9847 -7237.2222 -7237.2222 259.6916 259.6916 177221.82 177221.82 158.17876 158.17876 12000 -7109.1927 -7109.1927 -7239.6579 -7239.6579 252.39368 252.39368 176981.9 176981.9 323.51417 323.51417 Loop time of 59.1088 on 1 procs for 1000 steps with 4000 atoms Performance: 1.462 ns/day, 16.419 hours/ns, 16.918 timesteps/s 72.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 58.714 | 58.714 | 58.714 | 0.0 | 99.33 Neigh | 0.058635 | 0.058635 | 0.058635 | 0.0 | 0.10 Comm | 0.04779 | 0.04779 | 0.04779 | 0.0 | 0.08 Output | 3.7e-05 | 3.7e-05 | 3.7e-05 | 0.0 | 0.00 Modify | 0.27143 | 0.27143 | 0.27143 | 0.0 | 0.46 Other | | 0.01703 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3814.00 ave 3814 max 3814 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197100.0 ave 197100 max 197100 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197100 Ave neighs/atom = 49.275000 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.517919626985, Press = 1.29275873902206 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -7109.1927 -7109.1927 -7239.6579 -7239.6579 252.39368 252.39368 176981.9 176981.9 323.51417 323.51417 13000 -7110.2535 -7110.2535 -7240.0078 -7240.0078 251.01853 251.01853 177113.67 177113.67 189.52325 189.52325 Loop time of 55.5764 on 1 procs for 1000 steps with 4000 atoms Performance: 1.555 ns/day, 15.438 hours/ns, 17.993 timesteps/s 77.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 55.183 | 55.183 | 55.183 | 0.0 | 99.29 Neigh | 0.065242 | 0.065242 | 0.065242 | 0.0 | 0.12 Comm | 0.027505 | 0.027505 | 0.027505 | 0.0 | 0.05 Output | 3.6e-05 | 3.6e-05 | 3.6e-05 | 0.0 | 0.00 Modify | 0.28343 | 0.28343 | 0.28343 | 0.0 | 0.51 Other | | 0.01674 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3819.00 ave 3819 max 3819 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197262.0 ave 197262 max 197262 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197262 Ave neighs/atom = 49.315500 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.504245015958, Press = 1.50288823343556 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -7110.2535 -7110.2535 -7240.0078 -7240.0078 251.01853 251.01853 177113.67 177113.67 189.52325 189.52325 14000 -7108.3097 -7108.3097 -7240.8274 -7240.8274 256.36454 256.36454 177355.88 177355.88 -58.303069 -58.303069 Loop time of 55.3184 on 1 procs for 1000 steps with 4000 atoms Performance: 1.562 ns/day, 15.366 hours/ns, 18.077 timesteps/s 77.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 54.945 | 54.945 | 54.945 | 0.0 | 99.33 Neigh | 0.080017 | 0.080017 | 0.080017 | 0.0 | 0.14 Comm | 0.028158 | 0.028158 | 0.028158 | 0.0 | 0.05 Output | 3.61e-05 | 3.61e-05 | 3.61e-05 | 0.0 | 0.00 Modify | 0.24768 | 0.24768 | 0.24768 | 0.0 | 0.45 Other | | 0.01745 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3819.00 ave 3819 max 3819 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197414.0 ave 197414 max 197414 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197414 Ave neighs/atom = 49.353500 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.326389021122, Press = 0.737152353963827 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -7108.3097 -7108.3097 -7240.8274 -7240.8274 256.36454 256.36454 177355.88 177355.88 -58.303069 -58.303069 15000 -7107.9114 -7107.9114 -7239.1725 -7239.1725 253.93361 253.93361 177379.08 177379.08 -42.260366 -42.260366 Loop time of 59.46 on 1 procs for 1000 steps with 4000 atoms Performance: 1.453 ns/day, 16.517 hours/ns, 16.818 timesteps/s 73.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 59.042 | 59.042 | 59.042 | 0.0 | 99.30 Neigh | 0.060574 | 0.060574 | 0.060574 | 0.0 | 0.10 Comm | 0.087864 | 0.087864 | 0.087864 | 0.0 | 0.15 Output | 2.73e-05 | 2.73e-05 | 2.73e-05 | 0.0 | 0.00 Modify | 0.25274 | 0.25274 | 0.25274 | 0.0 | 0.43 Other | | 0.01698 | | | 0.03 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3818.00 ave 3818 max 3818 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197400.0 ave 197400 max 197400 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197400 Ave neighs/atom = 49.350000 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.277264889047, Press = 0.33572428154001 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -7107.9114 -7107.9114 -7239.1725 -7239.1725 253.93361 253.93361 177379.08 177379.08 -42.260366 -42.260366 16000 -7111.252 -7111.252 -7242.8376 -7242.8376 254.5613 254.5613 177367.65 177367.65 -105.54164 -105.54164 Loop time of 69.6842 on 1 procs for 1000 steps with 4000 atoms Performance: 1.240 ns/day, 19.357 hours/ns, 14.350 timesteps/s 61.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 69.34 | 69.34 | 69.34 | 0.0 | 99.51 Neigh | 0.0082958 | 0.0082958 | 0.0082958 | 0.0 | 0.01 Comm | 0.046771 | 0.046771 | 0.046771 | 0.0 | 0.07 Output | 3.62e-05 | 3.62e-05 | 3.62e-05 | 0.0 | 0.00 Modify | 0.2723 | 0.2723 | 0.2723 | 0.0 | 0.39 Other | | 0.01707 | | | 0.02 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3813.00 ave 3813 max 3813 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 197252.0 ave 197252 max 197252 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 197252 Ave neighs/atom = 49.313000 Neighbor list builds = 1 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T253.15.out" else "print 'not_converged' file output/vol_T253.15.out" print '${V}' file output/vol_T253.15.out 177311.012473244 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0