# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.580486714839936*${_u_distance} variable latticeconst_converted equal 5.580486714839936*1 lattice fcc ${latticeconst_converted} lattice fcc 5.58048671483994 Lattice spacing in x,y,z = 5.5804867 5.5804867 5.5804867 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (55.804867 55.804867 55.804867) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (55.804867 55.804867 55.804867) create_atoms CPU = 0.007 seconds variable mass_converted equal 40.078*${_u_mass} variable mass_converted equal 40.078*1 kim_interactions Ca WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Ca #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_JangSeolLee_2019_CaZnMg__MO_708495328010_001 pair_coeff * * Ca #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 40.078 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 173786.579609503 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 173786.579609503/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 173786.579609503/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 173786.579609503/(1*1*${_u_distance}) variable V0_metal equal 173786.579609503/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 173786.579609503*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 173786.579609503 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_708495328010_001#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 14 14 14 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.143 | 4.143 | 4.143 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -7208.4674 -7208.4674 -7360 -7360 293.15 293.15 173786.58 173786.58 931.33989 931.33989 1000 -7067.2616 -7067.2616 -7223.459 -7223.459 302.17446 302.17446 177864.41 177864.41 -30.206528 -30.206528 Loop time of 195.178 on 1 procs for 1000 steps with 4000 atoms Performance: 0.443 ns/day, 54.216 hours/ns, 5.124 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 194.06 | 194.06 | 194.06 | 0.0 | 99.43 Neigh | 0.278 | 0.278 | 0.278 | 0.0 | 0.14 Comm | 0.11079 | 0.11079 | 0.11079 | 0.0 | 0.06 Output | 0.00022111 | 0.00022111 | 0.00022111 | 0.0 | 0.00 Modify | 0.64031 | 0.64031 | 0.64031 | 0.0 | 0.33 Other | | 0.09045 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3813.00 ave 3813 max 3813 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 195318.0 ave 195318 max 195318 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 195318 Ave neighs/atom = 48.829500 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 15 15 15 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.766 | 3.766 | 3.766 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -7067.2616 -7067.2616 -7223.459 -7223.459 302.17446 302.17446 177864.41 177864.41 -30.206528 -30.206528 2000 -7070.1124 -7070.1124 -7219.6927 -7219.6927 289.37329 289.37329 177950.34 177950.34 -93.080963 -93.080963 Loop time of 208.166 on 1 procs for 1000 steps with 4000 atoms Performance: 0.415 ns/day, 57.824 hours/ns, 4.804 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 206.94 | 206.94 | 206.94 | 0.0 | 99.41 Neigh | 0.31469 | 0.31469 | 0.31469 | 0.0 | 0.15 Comm | 0.11914 | 0.11914 | 0.11914 | 0.0 | 0.06 Output | 0.00021246 | 0.00021246 | 0.00021246 | 0.0 | 0.00 Modify | 0.70122 | 0.70122 | 0.70122 | 0.0 | 0.34 Other | | 0.09399 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3816.00 ave 3816 max 3816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 195940.0 ave 195940 max 195940 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 195940 Ave neighs/atom = 48.985000 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 15 15 15 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.766 | 3.766 | 3.766 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -7070.1124 -7070.1124 -7219.6927 -7219.6927 289.37329 289.37329 177950.34 177950.34 -93.080963 -93.080963 3000 -7077.1035 -7077.1035 -7221.4676 -7221.4676 279.28212 279.28212 177741.42 177741.42 55.217534 55.217534 Loop time of 194.494 on 1 procs for 1000 steps with 4000 atoms Performance: 0.444 ns/day, 54.026 hours/ns, 5.142 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 193.39 | 193.39 | 193.39 | 0.0 | 99.43 Neigh | 0.27223 | 0.27223 | 0.27223 | 0.0 | 0.14 Comm | 0.10694 | 0.10694 | 0.10694 | 0.0 | 0.05 Output | 0.00021357 | 0.00021357 | 0.00021357 | 0.0 | 0.00 Modify | 0.6296 | 0.6296 | 0.6296 | 0.0 | 0.32 Other | | 0.09145 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3817.00 ave 3817 max 3817 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 196530.0 ave 196530 max 196530 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 196530 Ave neighs/atom = 49.132500 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 15 15 15 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.147 | 4.147 | 4.147 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -7077.1035 -7077.1035 -7221.4676 -7221.4676 279.28212 279.28212 177741.42 177741.42 55.217534 55.217534 4000 -7064.5151 -7064.5151 -7219.1079 -7219.1079 299.07041 299.07041 177843.31 177843.31 44.440235 44.440235 Loop time of 194.478 on 1 procs for 1000 steps with 4000 atoms Performance: 0.444 ns/day, 54.022 hours/ns, 5.142 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 193.38 | 193.38 | 193.38 | 0.0 | 99.43 Neigh | 0.27186 | 0.27186 | 0.27186 | 0.0 | 0.14 Comm | 0.10737 | 0.10737 | 0.10737 | 0.0 | 0.06 Output | 0.00021106 | 0.00021106 | 0.00021106 | 0.0 | 0.00 Modify | 0.62914 | 0.62914 | 0.62914 | 0.0 | 0.32 Other | | 0.09143 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3821.00 ave 3821 max 3821 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 196232.0 ave 196232 max 196232 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 196232 Ave neighs/atom = 49.058000 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 15 15 15 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.147 | 4.147 | 4.147 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -7064.5151 -7064.5151 -7219.1079 -7219.1079 299.07041 299.07041 177843.31 177843.31 44.440235 44.440235 5000 -7072.5119 -7072.5119 -7228.3369 -7228.3369 301.45401 301.45401 177576.92 177576.92 138.29285 138.29285 Loop time of 194.396 on 1 procs for 1000 steps with 4000 atoms Performance: 0.444 ns/day, 53.999 hours/ns, 5.144 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 193.29 | 193.29 | 193.29 | 0.0 | 99.43 Neigh | 0.27172 | 0.27172 | 0.27172 | 0.0 | 0.14 Comm | 0.10745 | 0.10745 | 0.10745 | 0.0 | 0.06 Output | 0.00017481 | 0.00017481 | 0.00017481 | 0.0 | 0.00 Modify | 0.63302 | 0.63302 | 0.63302 | 0.0 | 0.33 Other | | 0.09061 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3815.00 ave 3815 max 3815 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 196014.0 ave 196014 max 196014 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 196014 Ave neighs/atom = 49.003500 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 288.910633610061, Press = 69.9272257276751 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 15 15 15 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.147 | 4.147 | 4.147 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -7072.5119 -7072.5119 -7228.3369 -7228.3369 301.45401 301.45401 177576.92 177576.92 138.29285 138.29285 6000 -7068.4715 -7068.4715 -7217.1692 -7217.1692 287.66581 287.66581 177913.96 177913.96 -43.392222 -43.392222 Loop time of 194.36 on 1 procs for 1000 steps with 4000 atoms Performance: 0.445 ns/day, 53.989 hours/ns, 5.145 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 193.2 | 193.2 | 193.2 | 0.0 | 99.40 Neigh | 0.30545 | 0.30545 | 0.30545 | 0.0 | 0.16 Comm | 0.10814 | 0.10814 | 0.10814 | 0.0 | 0.06 Output | 0.00017592 | 0.00017592 | 0.00017592 | 0.0 | 0.00 Modify | 0.65288 | 0.65288 | 0.65288 | 0.0 | 0.34 Other | | 0.09063 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3814.00 ave 3814 max 3814 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 195604.0 ave 195604 max 195604 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 195604 Ave neighs/atom = 48.901000 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.720461301724, Press = -5.1860555686958 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 15 15 15 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.766 | 3.766 | 3.766 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -7068.4715 -7068.4715 -7217.1692 -7217.1692 287.66581 287.66581 177913.96 177913.96 -43.392222 -43.392222 7000 -7071.9412 -7071.9412 -7222.8485 -7222.8485 291.94031 291.94031 178172.04 178172.04 -390.61505 -390.61505 Loop time of 194.346 on 1 procs for 1000 steps with 4000 atoms Performance: 0.445 ns/day, 53.985 hours/ns, 5.145 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 193.22 | 193.22 | 193.22 | 0.0 | 99.42 Neigh | 0.27208 | 0.27208 | 0.27208 | 0.0 | 0.14 Comm | 0.10804 | 0.10804 | 0.10804 | 0.0 | 0.06 Output | 0.0001767 | 0.0001767 | 0.0001767 | 0.0 | 0.00 Modify | 0.65215 | 0.65215 | 0.65215 | 0.0 | 0.34 Other | | 0.09088 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3815.00 ave 3815 max 3815 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 196482.0 ave 196482 max 196482 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 196482 Ave neighs/atom = 49.120500 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.94121287135, Press = 1.7831779180796 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 15 15 15 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.766 | 3.766 | 3.766 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -7071.9412 -7071.9412 -7222.8485 -7222.8485 291.94031 291.94031 178172.04 178172.04 -390.61505 -390.61505 8000 -7068.3471 -7068.3471 -7223.8864 -7223.8864 300.90145 300.90145 177888.98 177888.98 -71.335328 -71.335328 Loop time of 194.743 on 1 procs for 1000 steps with 4000 atoms Performance: 0.444 ns/day, 54.095 hours/ns, 5.135 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 193.59 | 193.59 | 193.59 | 0.0 | 99.41 Neigh | 0.30589 | 0.30589 | 0.30589 | 0.0 | 0.16 Comm | 0.10812 | 0.10812 | 0.10812 | 0.0 | 0.06 Output | 0.0001756 | 0.0001756 | 0.0001756 | 0.0 | 0.00 Modify | 0.65156 | 0.65156 | 0.65156 | 0.0 | 0.33 Other | | 0.09143 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3816.00 ave 3816 max 3816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 196634.0 ave 196634 max 196634 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 196634 Ave neighs/atom = 49.158500 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.19859396562, Press = 7.12003089545143 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 15 15 15 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.766 | 3.766 | 3.766 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -7068.3471 -7068.3471 -7223.8864 -7223.8864 300.90145 300.90145 177888.98 177888.98 -71.335328 -71.335328 9000 -7070.3315 -7070.3315 -7224.0996 -7224.0996 297.4748 297.4748 177659.08 177659.08 119.05111 119.05111 Loop time of 194.569 on 1 procs for 1000 steps with 4000 atoms Performance: 0.444 ns/day, 54.047 hours/ns, 5.140 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 193.41 | 193.41 | 193.41 | 0.0 | 99.40 Neigh | 0.30614 | 0.30614 | 0.30614 | 0.0 | 0.16 Comm | 0.10756 | 0.10756 | 0.10756 | 0.0 | 0.06 Output | 0.00017422 | 0.00017422 | 0.00017422 | 0.0 | 0.00 Modify | 0.65342 | 0.65342 | 0.65342 | 0.0 | 0.34 Other | | 0.09115 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3818.00 ave 3818 max 3818 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 196290.0 ave 196290 max 196290 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 196290 Ave neighs/atom = 49.072500 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.357289078094, Press = 2.65933282479526 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 15 15 15 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.148 | 4.148 | 4.148 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -7070.3315 -7070.3315 -7224.0996 -7224.0996 297.4748 297.4748 177659.08 177659.08 119.05111 119.05111 10000 -7070.1072 -7070.1072 -7222.7105 -7222.7105 295.22158 295.22158 177763.32 177763.32 43.184196 43.184196 Loop time of 194.726 on 1 procs for 1000 steps with 4000 atoms Performance: 0.444 ns/day, 54.090 hours/ns, 5.135 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 193.57 | 193.57 | 193.57 | 0.0 | 99.40 Neigh | 0.30591 | 0.30591 | 0.30591 | 0.0 | 0.16 Comm | 0.10785 | 0.10785 | 0.10785 | 0.0 | 0.06 Output | 0.00017467 | 0.00017467 | 0.00017467 | 0.0 | 0.00 Modify | 0.65354 | 0.65354 | 0.65354 | 0.0 | 0.34 Other | | 0.09149 | | | 0.05 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3816.00 ave 3816 max 3816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 196404.0 ave 196404 max 196404 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 196404 Ave neighs/atom = 49.101000 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 177809.455911363 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0