# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.526318043470383*${_u_distance} variable latticeconst_converted equal 5.526318043470383*1 lattice fcc ${latticeconst_converted} lattice fcc 5.52631804347038 Lattice spacing in x,y,z = 5.526318 5.526318 5.526318 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (55.26318 55.26318 55.26318) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0 0 0) to (55.26318 55.26318 55.26318) create_atoms CPU = 0.001 seconds variable mass_converted equal 40.078*${_u_mass} variable mass_converted equal 40.078*1 kim_interactions Ca WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Ca #=== BEGIN kim interactions ================================== variable kim_update equal 0 variable kim_periodic equal 1 pair_style reax/c NULL safezone 3.0 mincap 100 pair_coeff * * /tmp/kim-shared-library-parameter-file-directory-XXXXXXY4X6S8/ffield-CaSiOH-lammps.reax.txt Ca WARNING: Van der Waals parameters for element SI indicate inner wall+shielding, but earlier atoms indicate a different van der Waals method. This may cause division-by-zero errors. Keeping van der Waals setting for earlier atoms. (src/REAXFF/reaxff_ffield.cpp:251) WARNING: Changed valency_val to valency_boc for X (src/REAXFF/reaxff_ffield.cpp:296) fix reaxqeq all qeq/reax 1 0.0 10.0 1.0e-6 reax/c #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 40.078 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 168774.809224151 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 168774.809224151/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 168774.809224151/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 168774.809224151/(1*1*${_u_distance}) variable V0_metal equal 168774.809224151/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 168774.809224151*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 168774.809224151 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1000 timestep ${timestep_converted} timestep 1 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1000 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*0.986923266716013 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1000 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 100 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 100 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 100 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 100 iso 0 0 1000 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/23.0605480120695 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/23.0605480120695 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/0.986923266716013 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/SM_714124634215_000#item-citation - pair reaxff command: @Article{Aktulga12, author = {H. M. Aktulga, J. C. Fogarty, S. A. Pandit, A. Y. Grama}, title = {Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques}, journal = {Parallel Computing}, year = 2012, volume = 38, pages = {245--259} } - fix qeq/reaxff command: @Article{Aktulga12, author = {H. M. Aktulga, J. C. Fogarty, S. A. Pandit, A. Y. Grama}, title = {Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques}, journal = {Parallel Computing}, year = 2012, volume = 38, pages = {245--259} } CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 4000, page size: 100000 master list distance cutoff = 12 ghost atom cutoff = 12 binsize = 6, bins = 10 10 10 2 neighbor lists, perpetual/occasional/extra = 2 0 0 (1) pair reax/c, perpetual attributes: half, newton off, ghost pair build: half/bin/newtoff/ghost stencil: full/ghost/bin/3d bin: standard (2) fix qeq/reax, perpetual, copy from (1) attributes: half, newton off pair build: copy stencil: none bin: none Per MPI rank memory allocation (min/avg/max) = 443 | 443 | 443 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -308932.77 -13396.593 -312188.79 -13537.787 273.15 273.15 168774.81 168774.81 881.86663 893.55137 1000 -305328.64 -13240.303 -308680.08 -13385.635 281.15472 281.15472 169454.8 169454.8 385.80223 390.91411 Loop time of 356.288 on 1 procs for 1000 steps with 4000 atoms Performance: 0.243 ns/day, 98.969 hours/ns, 2.807 timesteps/s 40.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 323.45 | 323.45 | 323.45 | 0.0 | 90.78 Neigh | 0.47118 | 0.47118 | 0.47118 | 0.0 | 0.13 Comm | 0.12455 | 0.12455 | 0.12455 | 0.0 | 0.03 Output | 0.00018834 | 0.00018834 | 0.00018834 | 0.0 | 0.00 Modify | 32.222 | 32.222 | 32.222 | 0.0 | 9.04 Other | | 0.01795 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 421918 ave 421918 max 421918 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 421918 Ave neighs/atom = 105.4795 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.7 | 442.7 | 442.7 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -305328.64 -13240.303 -308680.08 -13385.635 281.15472 281.15472 169454.8 169454.8 385.80223 390.91411 2000 -305589.17 -13251.6 -308854.83 -13393.213 273.95924 273.95924 169531.22 169531.22 -860.53252 -871.93457 Loop time of 367.094 on 1 procs for 1000 steps with 4000 atoms Performance: 0.235 ns/day, 101.970 hours/ns, 2.724 timesteps/s 38.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 332.42 | 332.42 | 332.42 | 0.0 | 90.56 Neigh | 0.62683 | 0.62683 | 0.62683 | 0.0 | 0.17 Comm | 0.14856 | 0.14856 | 0.14856 | 0.0 | 0.04 Output | 0.00011205 | 0.00011205 | 0.00011205 | 0.0 | 0.00 Modify | 33.877 | 33.877 | 33.877 | 0.0 | 9.23 Other | | 0.01694 | | | 0.00 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423255 ave 423255 max 423255 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423255 Ave neighs/atom = 105.81375 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.7 | 442.7 | 442.7 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -305589.17 -13251.6 -308854.83 -13393.213 273.95924 273.95924 169531.22 169531.22 -860.53252 -871.93457 3000 -305561.12 -13250.384 -308882.04 -13394.393 278.59432 278.59432 169380.41 169380.41 58.373807 59.14726 Loop time of 334.399 on 1 procs for 1000 steps with 4000 atoms Performance: 0.258 ns/day, 92.889 hours/ns, 2.990 timesteps/s 42.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 302.28 | 302.28 | 302.28 | 0.0 | 90.40 Neigh | 0.6865 | 0.6865 | 0.6865 | 0.0 | 0.21 Comm | 0.091935 | 0.091935 | 0.091935 | 0.0 | 0.03 Output | 0.00012341 | 0.00012341 | 0.00012341 | 0.0 | 0.00 Modify | 31.32 | 31.32 | 31.32 | 0.0 | 9.37 Other | | 0.01675 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423618 ave 423618 max 423618 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423618 Ave neighs/atom = 105.9045 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -305561.12 -13250.384 -308882.04 -13394.393 278.59432 278.59432 169380.41 169380.41 58.373807 59.14726 4000 -305597.55 -13251.964 -308896.68 -13395.028 276.76634 276.76634 169487.43 169487.43 -588.89391 -596.69675 Loop time of 268.536 on 1 procs for 1000 steps with 4000 atoms Performance: 0.322 ns/day, 74.593 hours/ns, 3.724 timesteps/s 52.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 243.23 | 243.23 | 243.23 | 0.0 | 90.58 Neigh | 0.64301 | 0.64301 | 0.64301 | 0.0 | 0.24 Comm | 0.062842 | 0.062842 | 0.062842 | 0.0 | 0.02 Output | 0.00011348 | 0.00011348 | 0.00011348 | 0.0 | 0.00 Modify | 24.575 | 24.575 | 24.575 | 0.0 | 9.15 Other | | 0.02761 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 422724 ave 422724 max 422724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 422724 Ave neighs/atom = 105.681 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -305597.55 -13251.964 -308896.68 -13395.028 276.76634 276.76634 169487.43 169487.43 -588.89391 -596.69675 5000 -305581.12 -13251.252 -308847.51 -13392.895 274.01942 274.01942 169348.81 169348.81 898.88095 910.79112 Loop time of 266.511 on 1 procs for 1000 steps with 4000 atoms Performance: 0.324 ns/day, 74.031 hours/ns, 3.752 timesteps/s 53.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 241.96 | 241.96 | 241.96 | 0.0 | 90.79 Neigh | 0.43415 | 0.43415 | 0.43415 | 0.0 | 0.16 Comm | 0.036581 | 0.036581 | 0.036581 | 0.0 | 0.01 Output | 9.4066e-05 | 9.4066e-05 | 9.4066e-05 | 0.0 | 0.00 Modify | 24.059 | 24.059 | 24.059 | 0.0 | 9.03 Other | | 0.01743 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423238 ave 423238 max 423238 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423238 Ave neighs/atom = 105.8095 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 274.139594435886, Press = 127.120325259137 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -305581.12 -13251.252 -308847.51 -13392.895 274.01942 274.01942 169348.81 169348.81 898.88095 910.79112 6000 -305648 -13254.151 -308847.55 -13392.897 268.41277 268.41277 169417.88 169417.88 -184.69234 -187.13951 Loop time of 247.852 on 1 procs for 1000 steps with 4000 atoms Performance: 0.349 ns/day, 68.848 hours/ns, 4.035 timesteps/s 57.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 224.8 | 224.8 | 224.8 | 0.0 | 90.70 Neigh | 0.59522 | 0.59522 | 0.59522 | 0.0 | 0.24 Comm | 0.074669 | 0.074669 | 0.074669 | 0.0 | 0.03 Output | 7.6894e-05 | 7.6894e-05 | 7.6894e-05 | 0.0 | 0.00 Modify | 22.364 | 22.364 | 22.364 | 0.0 | 9.02 Other | | 0.01775 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423134 ave 423134 max 423134 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423134 Ave neighs/atom = 105.7835 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.020224538144, Press = -0.523423830163019 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -305648 -13254.151 -308847.55 -13392.897 268.41277 268.41277 169417.88 169417.88 -184.69234 -187.13951 7000 -305502.91 -13247.86 -308860.86 -13393.474 281.70154 281.70154 169344.48 169344.48 445.258 451.15766 Loop time of 243.011 on 1 procs for 1000 steps with 4000 atoms Performance: 0.356 ns/day, 67.503 hours/ns, 4.115 timesteps/s 58.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 220.09 | 220.09 | 220.09 | 0.0 | 90.57 Neigh | 0.61423 | 0.61423 | 0.61423 | 0.0 | 0.25 Comm | 0.11088 | 0.11088 | 0.11088 | 0.0 | 0.05 Output | 7.988e-05 | 7.988e-05 | 7.988e-05 | 0.0 | 0.00 Modify | 22.182 | 22.182 | 22.182 | 0.0 | 9.13 Other | | 0.01663 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423172 ave 423172 max 423172 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423172 Ave neighs/atom = 105.793 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.288291817145, Press = 2.99257779298611 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -305502.91 -13247.86 -308860.86 -13393.474 281.70154 281.70154 169344.48 169344.48 445.258 451.15766 8000 -305656.36 -13254.514 -308891.66 -13394.81 271.41214 271.41214 169334.12 169334.12 572.46389 580.04903 Loop time of 213.846 on 1 procs for 1000 steps with 4000 atoms Performance: 0.404 ns/day, 59.402 hours/ns, 4.676 timesteps/s 66.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 194.02 | 194.02 | 194.02 | 0.0 | 90.73 Neigh | 0.45321 | 0.45321 | 0.45321 | 0.0 | 0.21 Comm | 0.036011 | 0.036011 | 0.036011 | 0.0 | 0.02 Output | 8.2694e-05 | 8.2694e-05 | 8.2694e-05 | 0.0 | 0.00 Modify | 19.302 | 19.302 | 19.302 | 0.0 | 9.03 Other | | 0.03487 | | | 0.02 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423029 ave 423029 max 423029 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423029 Ave neighs/atom = 105.75725 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.298613448787, Press = 0.313433861511257 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -305656.36 -13254.514 -308891.66 -13394.81 271.41214 271.41214 169334.12 169334.12 572.46389 580.04903 9000 -305590.29 -13251.649 -308845.08 -13392.79 273.04718 273.04718 169472.73 169472.73 -177.80693 -180.16287 Loop time of 152.627 on 1 procs for 1000 steps with 4000 atoms Performance: 0.566 ns/day, 42.396 hours/ns, 6.552 timesteps/s 96.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 138.35 | 138.35 | 138.35 | 0.0 | 90.65 Neigh | 0.3533 | 0.3533 | 0.3533 | 0.0 | 0.23 Comm | 0.036752 | 0.036752 | 0.036752 | 0.0 | 0.02 Output | 8.2454e-05 | 8.2454e-05 | 8.2454e-05 | 0.0 | 0.00 Modify | 13.865 | 13.865 | 13.865 | 0.0 | 9.08 Other | | 0.01744 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423497 ave 423497 max 423497 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423497 Ave neighs/atom = 105.87425 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.488539244486, Press = -0.240567516266156 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -305590.29 -13251.649 -308845.08 -13392.79 273.04718 273.04718 169472.73 169472.73 -177.80693 -180.16287 10000 -305610.15 -13252.51 -308891.59 -13394.807 275.28247 275.28247 169443.47 169443.47 -168.77471 -171.01098 Loop time of 160.084 on 1 procs for 1000 steps with 4000 atoms Performance: 0.540 ns/day, 44.468 hours/ns, 6.247 timesteps/s 93.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 145.19 | 145.19 | 145.19 | 0.0 | 90.70 Neigh | 0.40424 | 0.40424 | 0.40424 | 0.0 | 0.25 Comm | 0.03701 | 0.03701 | 0.03701 | 0.0 | 0.02 Output | 8.7614e-05 | 8.7614e-05 | 8.7614e-05 | 0.0 | 0.00 Modify | 14.432 | 14.432 | 14.432 | 0.0 | 9.02 Other | | 0.01791 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 422807 ave 422807 max 422807 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 422807 Ave neighs/atom = 105.70175 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.242721962031, Press = -0.815911172157145 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -305610.15 -13252.51 -308891.59 -13394.807 275.28247 275.28247 169443.47 169443.47 -168.77471 -171.01098 11000 -305625.42 -13253.173 -308908.83 -13395.554 275.44725 275.44725 169461.4 169461.4 -432.99037 -438.72749 Loop time of 162.227 on 1 procs for 1000 steps with 4000 atoms Performance: 0.533 ns/day, 45.063 hours/ns, 6.164 timesteps/s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 146.96 | 146.96 | 146.96 | 0.0 | 90.59 Neigh | 0.39432 | 0.39432 | 0.39432 | 0.0 | 0.24 Comm | 0.039445 | 0.039445 | 0.039445 | 0.0 | 0.02 Output | 8.6602e-05 | 8.6602e-05 | 8.6602e-05 | 0.0 | 0.00 Modify | 14.816 | 14.816 | 14.816 | 0.0 | 9.13 Other | | 0.01814 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423192 ave 423192 max 423192 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423192 Ave neighs/atom = 105.798 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.040629382411, Press = 1.1954659613348 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -305625.42 -13253.173 -308908.83 -13395.554 275.44725 275.44725 169461.4 169461.4 -432.99037 -438.72749 12000 -305572.06 -13250.859 -308825.78 -13391.953 272.95711 272.95711 169448.32 169448.32 -354.74196 -359.44229 Loop time of 161.217 on 1 procs for 1000 steps with 4000 atoms Performance: 0.536 ns/day, 44.782 hours/ns, 6.203 timesteps/s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 146.05 | 146.05 | 146.05 | 0.0 | 90.59 Neigh | 0.34786 | 0.34786 | 0.34786 | 0.0 | 0.22 Comm | 0.039572 | 0.039572 | 0.039572 | 0.0 | 0.02 Output | 8.6382e-05 | 8.6382e-05 | 8.6382e-05 | 0.0 | 0.00 Modify | 14.759 | 14.759 | 14.759 | 0.0 | 9.15 Other | | 0.01794 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423040 ave 423040 max 423040 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423040 Ave neighs/atom = 105.76 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.931058202713, Press = 0.784972823489941 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -305572.06 -13250.859 -308825.78 -13391.953 272.95711 272.95711 169448.32 169448.32 -354.74196 -359.44229 13000 -305630.3 -13253.384 -308846.03 -13392.831 269.77037 269.77037 169353.24 169353.24 787.4805 797.91462 Loop time of 153.188 on 1 procs for 1000 steps with 4000 atoms Performance: 0.564 ns/day, 42.552 hours/ns, 6.528 timesteps/s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 138.98 | 138.98 | 138.98 | 0.0 | 90.72 Neigh | 0.32392 | 0.32392 | 0.32392 | 0.0 | 0.21 Comm | 0.037809 | 0.037809 | 0.037809 | 0.0 | 0.02 Output | 7.6704e-05 | 7.6704e-05 | 7.6704e-05 | 0.0 | 0.00 Modify | 13.832 | 13.832 | 13.832 | 0.0 | 9.03 Other | | 0.01752 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423275 ave 423275 max 423275 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423275 Ave neighs/atom = 105.81875 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.082972979578, Press = 0.578275864773503 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -305630.3 -13253.384 -308846.03 -13392.831 269.77037 269.77037 169353.24 169353.24 787.4805 797.91462 14000 -305572.35 -13250.871 -308857.89 -13393.346 275.62686 275.62686 169533.18 169533.18 -974.23197 -987.14054 Loop time of 145.302 on 1 procs for 1000 steps with 4000 atoms Performance: 0.595 ns/day, 40.362 hours/ns, 6.882 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.14 | 132.14 | 132.14 | 0.0 | 90.94 Neigh | 0.30367 | 0.30367 | 0.30367 | 0.0 | 0.21 Comm | 0.034697 | 0.034697 | 0.034697 | 0.0 | 0.02 Output | 7.4679e-05 | 7.4679e-05 | 7.4679e-05 | 0.0 | 0.00 Modify | 12.807 | 12.807 | 12.807 | 0.0 | 8.81 Other | | 0.01649 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 422354 ave 422354 max 422354 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 422354 Ave neighs/atom = 105.5885 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.241768020847, Press = 1.82240345395762 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.7 | 442.7 | 442.7 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -305572.35 -13250.871 -308857.89 -13393.346 275.62686 275.62686 169533.18 169533.18 -974.23197 -987.14054 15000 -305714.56 -13257.038 -308888.56 -13394.675 266.269 266.269 169467.35 169467.35 -432.76309 -438.4972 Loop time of 138.527 on 1 procs for 1000 steps with 4000 atoms Performance: 0.624 ns/day, 38.480 hours/ns, 7.219 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.43 | 125.43 | 125.43 | 0.0 | 90.54 Neigh | 0.30247 | 0.30247 | 0.30247 | 0.0 | 0.22 Comm | 0.034298 | 0.034298 | 0.034298 | 0.0 | 0.02 Output | 0.00012972 | 0.00012972 | 0.00012972 | 0.0 | 0.00 Modify | 12.745 | 12.745 | 12.745 | 0.0 | 9.20 Other | | 0.01591 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423285 ave 423285 max 423285 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423285 Ave neighs/atom = 105.82125 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.264697104265, Press = -0.466103970109548 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -305714.56 -13257.038 -308888.56 -13394.675 266.269 266.269 169467.35 169467.35 -432.76309 -438.4972 16000 -305580.54 -13251.226 -308827.38 -13392.023 272.37984 272.37984 169513.9 169513.9 -588.21655 -596.01042 Loop time of 138.379 on 1 procs for 1000 steps with 4000 atoms Performance: 0.624 ns/day, 38.439 hours/ns, 7.227 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.25 | 125.25 | 125.25 | 0.0 | 90.51 Neigh | 0.341 | 0.341 | 0.341 | 0.0 | 0.25 Comm | 0.034314 | 0.034314 | 0.034314 | 0.0 | 0.02 Output | 9.0279e-05 | 9.0279e-05 | 9.0279e-05 | 0.0 | 0.00 Modify | 12.736 | 12.736 | 12.736 | 0.0 | 9.20 Other | | 0.01558 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 422915 ave 422915 max 422915 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 422915 Ave neighs/atom = 105.72875 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.139450559998, Press = -0.325353136779812 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -305580.54 -13251.226 -308827.38 -13392.023 272.37984 272.37984 169513.9 169513.9 -588.21655 -596.01042 17000 -305688.76 -13255.919 -308880.94 -13394.345 267.79439 267.79439 169460.81 169460.81 -472.73519 -478.99893 Loop time of 138.179 on 1 procs for 1000 steps with 4000 atoms Performance: 0.625 ns/day, 38.383 hours/ns, 7.237 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.08 | 125.08 | 125.08 | 0.0 | 90.52 Neigh | 0.34141 | 0.34141 | 0.34141 | 0.0 | 0.25 Comm | 0.034273 | 0.034273 | 0.034273 | 0.0 | 0.02 Output | 7.1123e-05 | 7.1123e-05 | 7.1123e-05 | 0.0 | 0.00 Modify | 12.706 | 12.706 | 12.706 | 0.0 | 9.20 Other | | 0.01573 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 423308 ave 423308 max 423308 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 423308 Ave neighs/atom = 105.827 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.086457718933, Press = 0.947866903202 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -305688.76 -13255.919 -308880.94 -13394.345 267.79439 267.79439 169460.81 169460.81 -472.73519 -478.99893 18000 -305566.9 -13250.635 -308874.2 -13394.053 277.45156 277.45156 169481.61 169481.61 -496.50215 -503.0808 Loop time of 138.223 on 1 procs for 1000 steps with 4000 atoms Performance: 0.625 ns/day, 38.395 hours/ns, 7.235 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.12 | 125.12 | 125.12 | 0.0 | 90.52 Neigh | 0.34096 | 0.34096 | 0.34096 | 0.0 | 0.25 Comm | 0.034243 | 0.034243 | 0.034243 | 0.0 | 0.02 Output | 7.0612e-05 | 7.0612e-05 | 7.0612e-05 | 0.0 | 0.00 Modify | 12.708 | 12.708 | 12.708 | 0.0 | 9.19 Other | | 0.01571 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 422930 ave 422930 max 422930 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 422930 Ave neighs/atom = 105.7325 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.983470701928, Press = 0.469713099065149 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.7 | 442.7 | 442.7 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -305566.9 -13250.635 -308874.2 -13394.053 277.45156 277.45156 169481.61 169481.61 -496.50215 -503.0808 19000 -305549.21 -13249.868 -308906.66 -13395.461 281.65973 281.65973 169215.8 169215.8 1357.9172 1375.9096 Loop time of 138.22 on 1 procs for 1000 steps with 4000 atoms Performance: 0.625 ns/day, 38.394 hours/ns, 7.235 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.16 | 125.16 | 125.16 | 0.0 | 90.55 Neigh | 0.3027 | 0.3027 | 0.3027 | 0.0 | 0.22 Comm | 0.033558 | 0.033558 | 0.033558 | 0.0 | 0.02 Output | 7.9909e-05 | 7.9909e-05 | 7.9909e-05 | 0.0 | 0.00 Modify | 12.709 | 12.709 | 12.709 | 0.0 | 9.20 Other | | 0.01511 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 422820 ave 422820 max 422820 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 422820 Ave neighs/atom = 105.705 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.946743353734, Press = 0.487815883262668 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -305549.21 -13249.868 -308906.66 -13395.461 281.65973 281.65973 169215.8 169215.8 1357.9172 1375.9096 20000 -305668.53 -13255.042 -308860.24 -13393.448 267.75497 267.75497 169272.86 169272.86 979.37608 992.35281 Loop time of 138.228 on 1 procs for 1000 steps with 4000 atoms Performance: 0.625 ns/day, 38.397 hours/ns, 7.234 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.14 | 125.14 | 125.14 | 0.0 | 90.53 Neigh | 0.3406 | 0.3406 | 0.3406 | 0.0 | 0.25 Comm | 0.033759 | 0.033759 | 0.033759 | 0.0 | 0.02 Output | 7.9759e-05 | 7.9759e-05 | 7.9759e-05 | 0.0 | 0.00 Modify | 12.698 | 12.698 | 12.698 | 0.0 | 9.19 Other | | 0.01508 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 422894 ave 422894 max 422894 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 422894 Ave neighs/atom = 105.7235 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.925119574177, Press = 0.922374452440203 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -305668.53 -13255.042 -308860.24 -13393.448 267.75497 267.75497 169272.86 169272.86 979.37608 992.35281 21000 -305677.68 -13255.438 -308953.53 -13397.493 274.8139 274.8139 169433.37 169433.37 -220.93324 -223.86061 Loop time of 138.267 on 1 procs for 1000 steps with 4000 atoms Performance: 0.625 ns/day, 38.407 hours/ns, 7.232 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.13 | 125.13 | 125.13 | 0.0 | 90.50 Neigh | 0.34055 | 0.34055 | 0.34055 | 0.0 | 0.25 Comm | 0.033809 | 0.033809 | 0.033809 | 0.0 | 0.02 Output | 5.1246e-05 | 5.1246e-05 | 5.1246e-05 | 0.0 | 0.00 Modify | 12.744 | 12.744 | 12.744 | 0.0 | 9.22 Other | | 0.01443 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 422989 ave 422989 max 422989 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 422989 Ave neighs/atom = 105.74725 Neighbor list builds = 9 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.970659599516, Press = -0.244099170534334 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -305677.68 -13255.438 -308953.53 -13397.493 274.8139 274.8139 169433.37 169433.37 -220.93324 -223.86061 22000 -305579.39 -13251.177 -308868.3 -13393.797 275.90867 275.90867 169432.95 169432.95 -382.51498 -387.58331 Loop time of 138.176 on 1 procs for 1000 steps with 4000 atoms Performance: 0.625 ns/day, 38.382 hours/ns, 7.237 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.1 | 125.1 | 125.1 | 0.0 | 90.54 Neigh | 0.30248 | 0.30248 | 0.30248 | 0.0 | 0.22 Comm | 0.033454 | 0.033454 | 0.033454 | 0.0 | 0.02 Output | 7.964e-05 | 7.964e-05 | 7.964e-05 | 0.0 | 0.00 Modify | 12.724 | 12.724 | 12.724 | 0.0 | 9.21 Other | | 0.01451 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 422962 ave 422962 max 422962 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 422962 Ave neighs/atom = 105.7405 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.988935275068, Press = 0.498182629246049 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 442.8 | 442.8 | 442.8 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -305579.39 -13251.177 -308868.3 -13393.797 275.90867 275.90867 169432.95 169432.95 -382.51498 -387.58331 23000 -305493.11 -13247.435 -308783.07 -13390.101 275.99685 275.99685 169520.1 169520.1 -159.58223 -161.69669 Loop time of 138.068 on 1 procs for 1000 steps with 4000 atoms Performance: 0.626 ns/day, 38.352 hours/ns, 7.243 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.02 | 125.02 | 125.02 | 0.0 | 90.55 Neigh | 0.30276 | 0.30276 | 0.30276 | 0.0 | 0.22 Comm | 0.033104 | 0.033104 | 0.033104 | 0.0 | 0.02 Output | 6.4571e-05 | 6.4571e-05 | 6.4571e-05 | 0.0 | 0.00 Modify | 12.696 | 12.696 | 12.696 | 0.0 | 9.20 Other | | 0.01444 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 422821 ave 422821 max 422821 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 422821 Ave neighs/atom = 105.70525 Neighbor list builds = 8 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 169421.693029889 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0