# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.195095829665661*${_u_distance} variable latticeconst_converted equal 4.195095829665661*1 lattice bcc ${latticeconst_converted} lattice bcc 4.19509582966566 Lattice spacing in x,y,z = 4.1950958 4.1950958 4.1950958 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (41.950958 41.950958 41.950958) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms create_atoms CPU = 0.000 seconds variable mass_converted equal 22.98977*${_u_mass} variable mass_converted equal 22.98977*1 kim_interactions Na #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_KimKoLee_2020_Na__MO_321355778754_000 pair_coeff * * Na #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 22.98977 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 73828.7742291291 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*1*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 73828.7742291291*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 73828.7742291291 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 253.15*${_u_temperature} variable temp_converted equal 253.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 253.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "253.15 - 0.2" variable T_up equal "253.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -2160.5227 -2160.5227 -2225.9344 -2225.9344 253.15 253.15 73828.774 73828.774 946.34215 946.34215 1000 -2085.0463 -2085.0463 -2148.8478 -2148.8478 246.9181 246.9181 77192.139 77192.139 -308.82832 -308.82832 Loop time of 19.5363 on 1 procs for 1000 steps with 2000 atoms Performance: 4.423 ns/day, 5.427 hours/ns, 51.187 timesteps/s 91.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 19.373 | 19.373 | 19.373 | 0.0 | 99.16 Neigh | 0.036071 | 0.036071 | 0.036071 | 0.0 | 0.18 Comm | 0.02132 | 0.02132 | 0.02132 | 0.0 | 0.11 Output | 4.27e-05 | 4.27e-05 | 4.27e-05 | 0.0 | 0.00 Modify | 0.095883 | 0.095883 | 0.095883 | 0.0 | 0.49 Other | | 0.01018 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2838.00 ave 2838 max 2838 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62838.0 ave 62838 max 62838 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62838 Ave neighs/atom = 31.419000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -2085.0463 -2085.0463 -2148.8478 -2148.8478 246.9181 246.9181 77192.139 77192.139 -308.82832 -308.82832 2000 -2091.894 -2091.894 -2157.4622 -2157.4622 253.75571 253.75571 76726.53 76726.53 -88.441783 -88.441783 Loop time of 20.9126 on 1 procs for 1000 steps with 2000 atoms Performance: 4.131 ns/day, 5.809 hours/ns, 47.818 timesteps/s 87.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 20.757 | 20.757 | 20.757 | 0.0 | 99.26 Neigh | 0.037518 | 0.037518 | 0.037518 | 0.0 | 0.18 Comm | 0.021611 | 0.021611 | 0.021611 | 0.0 | 0.10 Output | 4.29e-05 | 4.29e-05 | 4.29e-05 | 0.0 | 0.00 Modify | 0.085829 | 0.085829 | 0.085829 | 0.0 | 0.41 Other | | 0.01018 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2910.00 ave 2910 max 2910 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62550.0 ave 62550 max 62550 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62550 Ave neighs/atom = 31.275000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -2091.894 -2091.894 -2157.4622 -2157.4622 253.75571 253.75571 76726.53 76726.53 -88.441783 -88.441783 3000 -2091.3569 -2091.3569 -2157.1199 -2157.1199 254.50979 254.50979 76674.969 76674.969 120.97115 120.97115 Loop time of 19.8684 on 1 procs for 1000 steps with 2000 atoms Performance: 4.349 ns/day, 5.519 hours/ns, 50.331 timesteps/s 91.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 19.712 | 19.712 | 19.712 | 0.0 | 99.21 Neigh | 0.035443 | 0.035443 | 0.035443 | 0.0 | 0.18 Comm | 0.020385 | 0.020385 | 0.020385 | 0.0 | 0.10 Output | 4.23e-05 | 4.23e-05 | 4.23e-05 | 0.0 | 0.00 Modify | 0.090212 | 0.090212 | 0.090212 | 0.0 | 0.45 Other | | 0.01023 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2881.00 ave 2881 max 2881 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62658.0 ave 62658 max 62658 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62658 Ave neighs/atom = 31.329000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -2091.3569 -2091.3569 -2157.1199 -2157.1199 254.50979 254.50979 76674.969 76674.969 120.97115 120.97115 4000 -2091.1043 -2091.1043 -2155.7105 -2155.7105 250.03243 250.03243 76732.512 76732.512 8.3097773 8.3097773 Loop time of 18.8554 on 1 procs for 1000 steps with 2000 atoms Performance: 4.582 ns/day, 5.238 hours/ns, 53.035 timesteps/s 96.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.695 | 18.695 | 18.695 | 0.0 | 99.15 Neigh | 0.045291 | 0.045291 | 0.045291 | 0.0 | 0.24 Comm | 0.020562 | 0.020562 | 0.020562 | 0.0 | 0.11 Output | 5.44e-05 | 5.44e-05 | 5.44e-05 | 0.0 | 0.00 Modify | 0.084707 | 0.084707 | 0.084707 | 0.0 | 0.45 Other | | 0.01018 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2890.00 ave 2890 max 2890 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62152.0 ave 62152 max 62152 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62152 Ave neighs/atom = 31.076000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -2091.1043 -2091.1043 -2155.7105 -2155.7105 250.03243 250.03243 76732.512 76732.512 8.3097773 8.3097773 5000 -2090.0033 -2090.0033 -2155.2833 -2155.2833 252.64038 252.64038 76899.068 76899.068 -216.60563 -216.60563 Loop time of 18.872 on 1 procs for 1000 steps with 2000 atoms Performance: 4.578 ns/day, 5.242 hours/ns, 52.989 timesteps/s 95.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.717 | 18.717 | 18.717 | 0.0 | 99.18 Neigh | 0.038436 | 0.038436 | 0.038436 | 0.0 | 0.20 Comm | 0.020456 | 0.020456 | 0.020456 | 0.0 | 0.11 Output | 3.18e-05 | 3.18e-05 | 3.18e-05 | 0.0 | 0.00 Modify | 0.085521 | 0.085521 | 0.085521 | 0.0 | 0.45 Other | | 0.0101 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2880.00 ave 2880 max 2880 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62454.0 ave 62454 max 62454 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62454 Ave neighs/atom = 31.227000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 251.893652450248, Press = -74.7959733883604 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -2090.0033 -2090.0033 -2155.2833 -2155.2833 252.64038 252.64038 76899.068 76899.068 -216.60563 -216.60563 6000 -2088.4737 -2088.4737 -2155.0418 -2155.0418 257.62563 257.62563 76583.187 76583.187 221.54735 221.54735 Loop time of 18.7682 on 1 procs for 1000 steps with 2000 atoms Performance: 4.604 ns/day, 5.213 hours/ns, 53.281 timesteps/s 96.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.609 | 18.609 | 18.609 | 0.0 | 99.15 Neigh | 0.039987 | 0.039987 | 0.039987 | 0.0 | 0.21 Comm | 0.020433 | 0.020433 | 0.020433 | 0.0 | 0.11 Output | 3.07e-05 | 3.07e-05 | 3.07e-05 | 0.0 | 0.00 Modify | 0.088384 | 0.088384 | 0.088384 | 0.0 | 0.47 Other | | 0.01009 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2896.00 ave 2896 max 2896 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63026.0 ave 63026 max 63026 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63026 Ave neighs/atom = 31.513000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.462092024785, Press = -8.20061466432611 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -2088.4737 -2088.4737 -2155.0418 -2155.0418 257.62563 257.62563 76583.187 76583.187 221.54735 221.54735 7000 -2090.7449 -2090.7449 -2157.7643 -2157.7643 259.37226 259.37226 76668.883 76668.883 190.0928 190.0928 Loop time of 19.3193 on 1 procs for 1000 steps with 2000 atoms Performance: 4.472 ns/day, 5.366 hours/ns, 51.762 timesteps/s 94.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 19.159 | 19.159 | 19.159 | 0.0 | 99.17 Neigh | 0.04045 | 0.04045 | 0.04045 | 0.0 | 0.21 Comm | 0.020574 | 0.020574 | 0.020574 | 0.0 | 0.11 Output | 3.19e-05 | 3.19e-05 | 3.19e-05 | 0.0 | 0.00 Modify | 0.08939 | 0.08939 | 0.08939 | 0.0 | 0.46 Other | | 0.01009 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2911.00 ave 2911 max 2911 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62230.0 ave 62230 max 62230 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62230 Ave neighs/atom = 31.115000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.994014804477, Press = -15.9971998044362 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -2090.7449 -2090.7449 -2157.7643 -2157.7643 259.37226 259.37226 76668.883 76668.883 190.0928 190.0928 8000 -2088.5061 -2088.5061 -2154.5882 -2154.5882 255.74426 255.74426 77095.558 77095.558 -289.80556 -289.80556 Loop time of 18.7068 on 1 procs for 1000 steps with 2000 atoms Performance: 4.619 ns/day, 5.196 hours/ns, 53.456 timesteps/s 96.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.54 | 18.54 | 18.54 | 0.0 | 99.11 Neigh | 0.04696 | 0.04696 | 0.04696 | 0.0 | 0.25 Comm | 0.020621 | 0.020621 | 0.020621 | 0.0 | 0.11 Output | 3.24e-05 | 3.24e-05 | 3.24e-05 | 0.0 | 0.00 Modify | 0.089064 | 0.089064 | 0.089064 | 0.0 | 0.48 Other | | 0.01047 | | | 0.06 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2868.00 ave 2868 max 2868 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62120.0 ave 62120 max 62120 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62120 Ave neighs/atom = 31.060000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.358875613117, Press = -4.03174696070836 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -2088.5061 -2088.5061 -2154.5882 -2154.5882 255.74426 255.74426 77095.558 77095.558 -289.80556 -289.80556 9000 -2089.898 -2089.898 -2154.3438 -2154.3438 249.41174 249.41174 76689.215 76689.215 103.51818 103.51818 Loop time of 19.1922 on 1 procs for 1000 steps with 2000 atoms Performance: 4.502 ns/day, 5.331 hours/ns, 52.104 timesteps/s 95.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 19.029 | 19.029 | 19.029 | 0.0 | 99.15 Neigh | 0.039414 | 0.039414 | 0.039414 | 0.0 | 0.21 Comm | 0.020681 | 0.020681 | 0.020681 | 0.0 | 0.11 Output | 3.29e-05 | 3.29e-05 | 3.29e-05 | 0.0 | 0.00 Modify | 0.092648 | 0.092648 | 0.092648 | 0.0 | 0.48 Other | | 0.01017 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2893.00 ave 2893 max 2893 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62528.0 ave 62528 max 62528 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62528 Ave neighs/atom = 31.264000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.246420218378, Press = -2.34393637822008 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -2089.898 -2089.898 -2154.3438 -2154.3438 249.41174 249.41174 76689.215 76689.215 103.51818 103.51818 10000 -2089.1245 -2089.1245 -2155.4116 -2155.4116 256.53817 256.53817 76590.515 76590.515 165.27171 165.27171 Loop time of 19.8716 on 1 procs for 1000 steps with 2000 atoms Performance: 4.348 ns/day, 5.520 hours/ns, 50.323 timesteps/s 90.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 19.712 | 19.712 | 19.712 | 0.0 | 99.20 Neigh | 0.038455 | 0.038455 | 0.038455 | 0.0 | 0.19 Comm | 0.020618 | 0.020618 | 0.020618 | 0.0 | 0.10 Output | 3.24e-05 | 3.24e-05 | 3.24e-05 | 0.0 | 0.00 Modify | 0.090748 | 0.090748 | 0.090748 | 0.0 | 0.46 Other | | 0.009985 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2901.00 ave 2901 max 2901 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62436.0 ave 62436 max 62436 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62436 Ave neighs/atom = 31.218000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.068674010642, Press = -8.6228639832045 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -2089.1245 -2089.1245 -2155.4116 -2155.4116 256.53817 256.53817 76590.515 76590.515 165.27171 165.27171 11000 -2092.0911 -2092.0911 -2156.2403 -2156.2403 248.26411 248.26411 76888.186 76888.186 -158.87715 -158.87715 Loop time of 18.8654 on 1 procs for 1000 steps with 2000 atoms Performance: 4.580 ns/day, 5.240 hours/ns, 53.007 timesteps/s 96.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.69 | 18.69 | 18.69 | 0.0 | 99.07 Neigh | 0.049587 | 0.049587 | 0.049587 | 0.0 | 0.26 Comm | 0.020579 | 0.020579 | 0.020579 | 0.0 | 0.11 Output | 3.04e-05 | 3.04e-05 | 3.04e-05 | 0.0 | 0.00 Modify | 0.095475 | 0.095475 | 0.095475 | 0.0 | 0.51 Other | | 0.01009 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2896.00 ave 2896 max 2896 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62004.0 ave 62004 max 62004 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62004 Ave neighs/atom = 31.002000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.223485931858, Press = -1.05137706857504 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -2092.0911 -2092.0911 -2156.2403 -2156.2403 248.26411 248.26411 76888.186 76888.186 -158.87715 -158.87715 12000 -2089.5051 -2089.5051 -2155.5663 -2155.5663 255.66358 255.66358 76630.663 76630.663 159.95286 159.95286 Loop time of 18.9946 on 1 procs for 1000 steps with 2000 atoms Performance: 4.549 ns/day, 5.276 hours/ns, 52.647 timesteps/s 95.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.836 | 18.836 | 18.836 | 0.0 | 99.17 Neigh | 0.03878 | 0.03878 | 0.03878 | 0.0 | 0.20 Comm | 0.020671 | 0.020671 | 0.020671 | 0.0 | 0.11 Output | 2.98e-05 | 2.98e-05 | 2.98e-05 | 0.0 | 0.00 Modify | 0.088734 | 0.088734 | 0.088734 | 0.0 | 0.47 Other | | 0.0102 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2894.00 ave 2894 max 2894 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62506.0 ave 62506 max 62506 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62506 Ave neighs/atom = 31.253000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.155332691298, Press = -1.22320490796256 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -2089.5051 -2089.5051 -2155.5663 -2155.5663 255.66358 255.66358 76630.663 76630.663 159.95286 159.95286 13000 -2089.0161 -2089.0161 -2154.9412 -2154.9412 255.13694 255.13694 76714.057 76714.057 177.64804 177.64804 Loop time of 18.7582 on 1 procs for 1000 steps with 2000 atoms Performance: 4.606 ns/day, 5.211 hours/ns, 53.310 timesteps/s 96.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.56 | 18.56 | 18.56 | 0.0 | 98.94 Neigh | 0.058024 | 0.058024 | 0.058024 | 0.0 | 0.31 Comm | 0.040738 | 0.040738 | 0.040738 | 0.0 | 0.22 Output | 3.03e-05 | 3.03e-05 | 3.03e-05 | 0.0 | 0.00 Modify | 0.089493 | 0.089493 | 0.089493 | 0.0 | 0.48 Other | | 0.01009 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2910.00 ave 2910 max 2910 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62800.0 ave 62800 max 62800 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62800 Ave neighs/atom = 31.400000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.087921132439, Press = -1.83963994665635 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -2089.0161 -2089.0161 -2154.9412 -2154.9412 255.13694 255.13694 76714.057 76714.057 177.64804 177.64804 14000 -2091.0949 -2091.0949 -2155.0654 -2155.0654 247.57219 247.57219 76551.724 76551.724 323.88948 323.88948 Loop time of 18.8658 on 1 procs for 1000 steps with 2000 atoms Performance: 4.580 ns/day, 5.240 hours/ns, 53.006 timesteps/s 96.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.686 | 18.686 | 18.686 | 0.0 | 99.05 Neigh | 0.06048 | 0.06048 | 0.06048 | 0.0 | 0.32 Comm | 0.020553 | 0.020553 | 0.020553 | 0.0 | 0.11 Output | 2.51e-05 | 2.51e-05 | 2.51e-05 | 0.0 | 0.00 Modify | 0.089044 | 0.089044 | 0.089044 | 0.0 | 0.47 Other | | 0.01006 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2893.00 ave 2893 max 2893 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62746.0 ave 62746 max 62746 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62746 Ave neighs/atom = 31.373000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.966541110175, Press = -0.824429985802893 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -2091.0949 -2091.0949 -2155.0654 -2155.0654 247.57219 247.57219 76551.724 76551.724 323.88948 323.88948 15000 -2090.6368 -2090.6368 -2156.3214 -2156.3214 254.20618 254.20618 76744.771 76744.771 -6.2593234 -6.2593234 Loop time of 18.0137 on 1 procs for 1000 steps with 2000 atoms Performance: 4.796 ns/day, 5.004 hours/ns, 55.513 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 17.858 | 17.858 | 17.858 | 0.0 | 99.14 Neigh | 0.036626 | 0.036626 | 0.036626 | 0.0 | 0.20 Comm | 0.020375 | 0.020375 | 0.020375 | 0.0 | 0.11 Output | 3.09e-05 | 3.09e-05 | 3.09e-05 | 0.0 | 0.00 Modify | 0.088511 | 0.088511 | 0.088511 | 0.0 | 0.49 Other | | 0.009948 | | | 0.06 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2908.00 ave 2908 max 2908 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62360.0 ave 62360 max 62360 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62360 Ave neighs/atom = 31.180000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.078729305143, Press = -1.43592905050581 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -2090.6368 -2090.6368 -2156.3214 -2156.3214 254.20618 254.20618 76744.771 76744.771 -6.2593234 -6.2593234 16000 -2088.024 -2088.024 -2155.2246 -2155.2246 260.07343 260.07343 76666.225 76666.225 133.68327 133.68327 Loop time of 17.4793 on 1 procs for 1000 steps with 2000 atoms Performance: 4.943 ns/day, 4.855 hours/ns, 57.211 timesteps/s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 17.329 | 17.329 | 17.329 | 0.0 | 99.14 Neigh | 0.03341 | 0.03341 | 0.03341 | 0.0 | 0.19 Comm | 0.019957 | 0.019957 | 0.019957 | 0.0 | 0.11 Output | 2.53e-05 | 2.53e-05 | 2.53e-05 | 0.0 | 0.00 Modify | 0.086789 | 0.086789 | 0.086789 | 0.0 | 0.50 Other | | 0.009704 | | | 0.06 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2901.00 ave 2901 max 2901 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62812.0 ave 62812 max 62812 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62812 Ave neighs/atom = 31.406000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.080621962687, Press = -1.09884988182582 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -2088.024 -2088.024 -2155.2246 -2155.2246 260.07343 260.07343 76666.225 76666.225 133.68327 133.68327 17000 -2092.4305 -2092.4305 -2157.1235 -2157.1235 250.3683 250.3683 76677.482 76677.482 -3.6647892 -3.6647892 Loop time of 16.8099 on 1 procs for 1000 steps with 2000 atoms Performance: 5.140 ns/day, 4.669 hours/ns, 59.489 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 16.658 | 16.658 | 16.658 | 0.0 | 99.10 Neigh | 0.038195 | 0.038195 | 0.038195 | 0.0 | 0.23 Comm | 0.019587 | 0.019587 | 0.019587 | 0.0 | 0.12 Output | 2.98e-05 | 2.98e-05 | 2.98e-05 | 0.0 | 0.00 Modify | 0.08466 | 0.08466 | 0.08466 | 0.0 | 0.50 Other | | 0.009555 | | | 0.06 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2901.00 ave 2901 max 2901 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 61742.0 ave 61742 max 61742 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 61742 Ave neighs/atom = 30.871000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.996225223723, Press = -3.23978814296904 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -2092.4305 -2092.4305 -2157.1235 -2157.1235 250.3683 250.3683 76677.482 76677.482 -3.6647892 -3.6647892 18000 -2093.8271 -2093.8271 -2156.1521 -2156.1521 241.20398 241.20398 76834.433 76834.433 -207.50406 -207.50406 Loop time of 17.2077 on 1 procs for 1000 steps with 2000 atoms Performance: 5.021 ns/day, 4.780 hours/ns, 58.113 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 17.055 | 17.055 | 17.055 | 0.0 | 99.11 Neigh | 0.037236 | 0.037236 | 0.037236 | 0.0 | 0.22 Comm | 0.019653 | 0.019653 | 0.019653 | 0.0 | 0.11 Output | 3.04e-05 | 3.04e-05 | 3.04e-05 | 0.0 | 0.00 Modify | 0.086066 | 0.086066 | 0.086066 | 0.0 | 0.50 Other | | 0.009949 | | | 0.06 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2893.00 ave 2893 max 2893 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62422.0 ave 62422 max 62422 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62422 Ave neighs/atom = 31.211000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T253.15.out" else "print 'not_converged' file output/vol_T253.15.out" print '${V}' file output/vol_T253.15.out 76741.7496803271 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0