# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.195095829665661*${_u_distance} variable latticeconst_converted equal 4.195095829665661*1 lattice bcc ${latticeconst_converted} lattice bcc 4.19509582966566 Lattice spacing in x,y,z = 4.1950958 4.1950958 4.1950958 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (41.950958 41.950958 41.950958) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms create_atoms CPU = 0.000 seconds variable mass_converted equal 22.98977*${_u_mass} variable mass_converted equal 22.98977*1 kim_interactions Na #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_KimKoLee_2020_Na__MO_321355778754_000 pair_coeff * * Na #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 22.98977 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 73828.7742291291 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*1*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 73828.7742291291*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 73828.7742291291 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -2155.3549 -2155.3549 -2225.9344 -2225.9344 273.15 273.15 73828.774 73828.774 1021.1076 1021.1076 1000 -2074.1787 -2074.1787 -2143.4228 -2143.4228 267.98155 267.98155 77554.98 77554.98 -422.06482 -422.06482 Loop time of 19.6923 on 1 procs for 1000 steps with 2000 atoms Performance: 4.387 ns/day, 5.470 hours/ns, 50.781 timesteps/s 89.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 19.535 | 19.535 | 19.535 | 0.0 | 99.20 Neigh | 0.040392 | 0.040392 | 0.040392 | 0.0 | 0.21 Comm | 0.020514 | 0.020514 | 0.020514 | 0.0 | 0.10 Output | 6.75e-05 | 6.75e-05 | 6.75e-05 | 0.0 | 0.00 Modify | 0.085722 | 0.085722 | 0.085722 | 0.0 | 0.44 Other | | 0.01033 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2822.00 ave 2822 max 2822 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62800.0 ave 62800 max 62800 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62800 Ave neighs/atom = 31.400000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -2074.1787 -2074.1787 -2143.4228 -2143.4228 267.98155 267.98155 77554.98 77554.98 -422.06482 -422.06482 2000 -2080.978 -2080.978 -2151.9343 -2151.9343 274.60824 274.60824 76718.68 76718.68 195.94156 195.94156 Loop time of 20.4309 on 1 procs for 1000 steps with 2000 atoms Performance: 4.229 ns/day, 5.675 hours/ns, 48.945 timesteps/s 88.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 20.235 | 20.235 | 20.235 | 0.0 | 99.04 Neigh | 0.052521 | 0.052521 | 0.052521 | 0.0 | 0.26 Comm | 0.020575 | 0.020575 | 0.020575 | 0.0 | 0.10 Output | 4.45e-05 | 4.45e-05 | 4.45e-05 | 0.0 | 0.00 Modify | 0.1124 | 0.1124 | 0.1124 | 0.0 | 0.55 Other | | 0.01041 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2868.00 ave 2868 max 2868 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63080.0 ave 63080 max 63080 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63080 Ave neighs/atom = 31.540000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -2080.978 -2080.978 -2151.9343 -2151.9343 274.60824 274.60824 76718.68 76718.68 195.94156 195.94156 3000 -2076.6689 -2076.6689 -2148.2563 -2148.2563 277.05058 277.05058 77144.169 77144.169 -112.53231 -112.53231 Loop time of 19.1592 on 1 procs for 1000 steps with 2000 atoms Performance: 4.510 ns/day, 5.322 hours/ns, 52.194 timesteps/s 93.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 19.003 | 19.003 | 19.003 | 0.0 | 99.19 Neigh | 0.040725 | 0.040725 | 0.040725 | 0.0 | 0.21 Comm | 0.020427 | 0.020427 | 0.020427 | 0.0 | 0.11 Output | 4.35e-05 | 4.35e-05 | 4.35e-05 | 0.0 | 0.00 Modify | 0.084807 | 0.084807 | 0.084807 | 0.0 | 0.44 Other | | 0.01009 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2887.00 ave 2887 max 2887 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62942.0 ave 62942 max 62942 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62942 Ave neighs/atom = 31.471000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -2076.6689 -2076.6689 -2148.2563 -2148.2563 277.05058 277.05058 77144.169 77144.169 -112.53231 -112.53231 4000 -2078.9151 -2078.9151 -2148.0153 -2148.0153 267.42507 267.42507 76890.177 76890.177 224.24796 224.24796 Loop time of 19.1082 on 1 procs for 1000 steps with 2000 atoms Performance: 4.522 ns/day, 5.308 hours/ns, 52.334 timesteps/s 94.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.951 | 18.951 | 18.951 | 0.0 | 99.18 Neigh | 0.04184 | 0.04184 | 0.04184 | 0.0 | 0.22 Comm | 0.02018 | 0.02018 | 0.02018 | 0.0 | 0.11 Output | 4.46e-05 | 4.46e-05 | 4.46e-05 | 0.0 | 0.00 Modify | 0.084913 | 0.084913 | 0.084913 | 0.0 | 0.44 Other | | 0.01022 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2887.00 ave 2887 max 2887 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62724.0 ave 62724 max 62724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62724 Ave neighs/atom = 31.362000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -2078.9151 -2078.9151 -2148.0153 -2148.0153 267.42507 267.42507 76890.177 76890.177 224.24796 224.24796 5000 -2076.7889 -2076.7889 -2147.4126 -2147.4126 273.32093 273.32093 77113.083 77113.083 10.316892 10.316892 Loop time of 19.3182 on 1 procs for 1000 steps with 2000 atoms Performance: 4.472 ns/day, 5.366 hours/ns, 51.765 timesteps/s 93.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 19.161 | 19.161 | 19.161 | 0.0 | 99.18 Neigh | 0.038894 | 0.038894 | 0.038894 | 0.0 | 0.20 Comm | 0.020391 | 0.020391 | 0.020391 | 0.0 | 0.11 Output | 3.54e-05 | 3.54e-05 | 3.54e-05 | 0.0 | 0.00 Modify | 0.088092 | 0.088092 | 0.088092 | 0.0 | 0.46 Other | | 0.01021 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2867.00 ave 2867 max 2867 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62960.0 ave 62960 max 62960 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62960 Ave neighs/atom = 31.480000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 276.687541320448, Press = -10.5347631450984 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -2076.7889 -2076.7889 -2147.4126 -2147.4126 273.32093 273.32093 77113.083 77113.083 10.316892 10.316892 6000 -2082.2216 -2082.2216 -2152.5559 -2152.5559 272.20114 272.20114 76776.037 76776.037 203.86983 203.86983 Loop time of 18.4476 on 1 procs for 1000 steps with 2000 atoms Performance: 4.684 ns/day, 5.124 hours/ns, 54.207 timesteps/s 97.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.282 | 18.282 | 18.282 | 0.0 | 99.10 Neigh | 0.040779 | 0.040779 | 0.040779 | 0.0 | 0.22 Comm | 0.021985 | 0.021985 | 0.021985 | 0.0 | 0.12 Output | 3.15e-05 | 3.15e-05 | 3.15e-05 | 0.0 | 0.00 Modify | 0.092958 | 0.092958 | 0.092958 | 0.0 | 0.50 Other | | 0.01016 | | | 0.06 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2907.00 ave 2907 max 2907 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62540.0 ave 62540 max 62540 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62540 Ave neighs/atom = 31.270000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.48232858684, Press = -16.6691356249022 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -2082.2216 -2082.2216 -2152.5559 -2152.5559 272.20114 272.20114 76776.037 76776.037 203.86983 203.86983 7000 -2078.7921 -2078.7921 -2147.7622 -2147.7622 266.9214 266.9214 77264.505 77264.505 -351.43517 -351.43517 Loop time of 18.7768 on 1 procs for 1000 steps with 2000 atoms Performance: 4.601 ns/day, 5.216 hours/ns, 53.257 timesteps/s 95.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.577 | 18.577 | 18.577 | 0.0 | 98.94 Neigh | 0.059936 | 0.059936 | 0.059936 | 0.0 | 0.32 Comm | 0.04002 | 0.04002 | 0.04002 | 0.0 | 0.21 Output | 3.12e-05 | 3.12e-05 | 3.12e-05 | 0.0 | 0.00 Modify | 0.089134 | 0.089134 | 0.089134 | 0.0 | 0.47 Other | | 0.01018 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2877.00 ave 2877 max 2877 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63230.0 ave 63230 max 63230 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63230 Ave neighs/atom = 31.615000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.115882364064, Press = 15.1497694617107 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -2078.7921 -2078.7921 -2147.7622 -2147.7622 266.9214 266.9214 77264.505 77264.505 -351.43517 -351.43517 8000 -2079.7324 -2079.7324 -2150.398 -2150.398 273.48327 273.48327 76889.35 76889.35 95.111488 95.111488 Loop time of 18.5982 on 1 procs for 1000 steps with 2000 atoms Performance: 4.646 ns/day, 5.166 hours/ns, 53.769 timesteps/s 98.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.435 | 18.435 | 18.435 | 0.0 | 99.12 Neigh | 0.039807 | 0.039807 | 0.039807 | 0.0 | 0.21 Comm | 0.020412 | 0.020412 | 0.020412 | 0.0 | 0.11 Output | 2.41e-05 | 2.41e-05 | 2.41e-05 | 0.0 | 0.00 Modify | 0.093109 | 0.093109 | 0.093109 | 0.0 | 0.50 Other | | 0.01015 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2888.00 ave 2888 max 2888 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62300.0 ave 62300 max 62300 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62300 Ave neighs/atom = 31.150000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 271.862377792384, Press = -2.01754015295512 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -2079.7324 -2079.7324 -2150.398 -2150.398 273.48327 273.48327 76889.35 76889.35 95.111488 95.111488 9000 -2078.1893 -2078.1893 -2150.2415 -2150.2415 278.84957 278.84957 77037.435 77037.435 -2.420827 -2.420827 Loop time of 18.4919 on 1 procs for 1000 steps with 2000 atoms Performance: 4.672 ns/day, 5.137 hours/ns, 54.078 timesteps/s 96.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.332 | 18.332 | 18.332 | 0.0 | 99.14 Neigh | 0.039007 | 0.039007 | 0.039007 | 0.0 | 0.21 Comm | 0.02012 | 0.02012 | 0.02012 | 0.0 | 0.11 Output | 3.11e-05 | 3.11e-05 | 3.11e-05 | 0.0 | 0.00 Modify | 0.09065 | 0.09065 | 0.09065 | 0.0 | 0.49 Other | | 0.009954 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2855.00 ave 2855 max 2855 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62904.0 ave 62904 max 62904 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62904 Ave neighs/atom = 31.452000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.627319457987, Press = 0.378083930640959 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -2078.1893 -2078.1893 -2150.2415 -2150.2415 278.84957 278.84957 77037.435 77037.435 -2.420827 -2.420827 10000 -2080.5178 -2080.5178 -2151.6842 -2151.6842 275.42111 275.42111 76907.498 76907.498 16.563431 16.563431 Loop time of 18.9125 on 1 procs for 1000 steps with 2000 atoms Performance: 4.568 ns/day, 5.253 hours/ns, 52.875 timesteps/s 95.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.742 | 18.742 | 18.742 | 0.0 | 99.10 Neigh | 0.038922 | 0.038922 | 0.038922 | 0.0 | 0.21 Comm | 0.020697 | 0.020697 | 0.020697 | 0.0 | 0.11 Output | 2.45e-05 | 2.45e-05 | 2.45e-05 | 0.0 | 0.00 Modify | 0.10058 | 0.10058 | 0.10058 | 0.0 | 0.53 Other | | 0.01028 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2866.00 ave 2866 max 2866 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62592.0 ave 62592 max 62592 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62592 Ave neighs/atom = 31.296000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.606121032241, Press = -3.28876168767884 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -2080.5178 -2080.5178 -2151.6842 -2151.6842 275.42111 275.42111 76907.498 76907.498 16.563431 16.563431 11000 -2076.6903 -2076.6903 -2146.4672 -2146.4672 270.04364 270.04364 77469.23 77469.23 -483.0621 -483.0621 Loop time of 18.2299 on 1 procs for 1000 steps with 2000 atoms Performance: 4.739 ns/day, 5.064 hours/ns, 54.855 timesteps/s 98.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.068 | 18.068 | 18.068 | 0.0 | 99.11 Neigh | 0.042895 | 0.042895 | 0.042895 | 0.0 | 0.24 Comm | 0.020081 | 0.020081 | 0.020081 | 0.0 | 0.11 Output | 2.47e-05 | 2.47e-05 | 2.47e-05 | 0.0 | 0.00 Modify | 0.088899 | 0.088899 | 0.088899 | 0.0 | 0.49 Other | | 0.01018 | | | 0.06 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2863.00 ave 2863 max 2863 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62594.0 ave 62594 max 62594 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62594 Ave neighs/atom = 31.297000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.04478955736, Press = 5.67756305078319 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -2076.6903 -2076.6903 -2146.4672 -2146.4672 270.04364 270.04364 77469.23 77469.23 -483.0621 -483.0621 12000 -2074.2862 -2074.2862 -2147.9582 -2147.9582 285.11804 285.11804 76895.23 76895.23 198.08447 198.08447 Loop time of 18.9541 on 1 procs for 1000 steps with 2000 atoms Performance: 4.558 ns/day, 5.265 hours/ns, 52.759 timesteps/s 95.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.793 | 18.793 | 18.793 | 0.0 | 99.15 Neigh | 0.041597 | 0.041597 | 0.041597 | 0.0 | 0.22 Comm | 0.020127 | 0.020127 | 0.020127 | 0.0 | 0.11 Output | 3.16e-05 | 3.16e-05 | 3.16e-05 | 0.0 | 0.00 Modify | 0.08971 | 0.08971 | 0.08971 | 0.0 | 0.47 Other | | 0.01007 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2873.00 ave 2873 max 2873 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62922.0 ave 62922 max 62922 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62922 Ave neighs/atom = 31.461000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.032203435247, Press = -2.20517001652193 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -2074.2862 -2074.2862 -2147.9582 -2147.9582 285.11804 285.11804 76895.23 76895.23 198.08447 198.08447 13000 -2077.5725 -2077.5725 -2148.2712 -2148.2712 273.61126 273.61126 77123.79 77123.79 -34.442486 -34.442486 Loop time of 18.9615 on 1 procs for 1000 steps with 2000 atoms Performance: 4.557 ns/day, 5.267 hours/ns, 52.738 timesteps/s 95.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.801 | 18.801 | 18.801 | 0.0 | 99.16 Neigh | 0.03917 | 0.03917 | 0.03917 | 0.0 | 0.21 Comm | 0.020302 | 0.020302 | 0.020302 | 0.0 | 0.11 Output | 3.23e-05 | 3.23e-05 | 3.23e-05 | 0.0 | 0.00 Modify | 0.09017 | 0.09017 | 0.09017 | 0.0 | 0.48 Other | | 0.01042 | | | 0.05 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2844.00 ave 2844 max 2844 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63098.0 ave 63098 max 63098 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63098 Ave neighs/atom = 31.549000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.189354493744, Press = 0.669100803644804 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -2077.5725 -2077.5725 -2148.2712 -2148.2712 273.61126 273.61126 77123.79 77123.79 -34.442486 -34.442486 14000 -2074.611 -2074.611 -2148.1005 -2148.1005 284.41194 284.41194 76814.862 76814.862 242.01834 242.01834 Loop time of 18.9716 on 1 procs for 1000 steps with 2000 atoms Performance: 4.554 ns/day, 5.270 hours/ns, 52.710 timesteps/s 94.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 18.787 | 18.787 | 18.787 | 0.0 | 99.03 Neigh | 0.044573 | 0.044573 | 0.044573 | 0.0 | 0.23 Comm | 0.020424 | 0.020424 | 0.020424 | 0.0 | 0.11 Output | 3.05e-05 | 3.05e-05 | 3.05e-05 | 0.0 | 0.00 Modify | 0.089324 | 0.089324 | 0.089324 | 0.0 | 0.47 Other | | 0.03047 | | | 0.16 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2879.00 ave 2879 max 2879 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62972.0 ave 62972 max 62972 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62972 Ave neighs/atom = 31.486000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 77002.1003539804 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0